Wall clock time and date at job start Sun Mar 29 2020 23:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00025 * 2 1 4 4 H 1.09007 * 109.53269 * 329.90638 * 3 2 1 5 5 C 1.53119 * 109.50242 * 90.00088 * 3 2 1 6 6 C 1.53122 * 109.15895 * 177.60073 * 5 3 2 7 7 C 1.53041 * 109.27455 * 302.34113 * 6 5 3 8 8 N 1.46843 * 109.51951 * 59.18684 * 7 6 5 9 9 C 1.46900 * 110.99864 * 174.15676 * 8 7 6 10 10 C 1.53001 * 109.47192 * 293.83620 * 9 8 7 11 11 H 1.08998 * 109.47033 * 56.34280 * 10 9 8 12 12 C 1.47199 * 109.47283 * 296.34264 * 10 9 8 13 13 N 6.65891 * 111.53711 * 330.76415 * 2 1 3 14 14 C 1.52997 * 109.47037 * 176.34243 * 10 9 8 15 15 C 1.50706 * 109.47012 * 184.99970 * 14 10 9 16 16 H 1.08000 * 119.99673 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99935 * 180.02562 * 15 14 10 18 18 N 1.31510 * 119.99964 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47419 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47140 * 300.00013 * 19 17 15 22 22 H 1.48506 * 109.47193 * 59.99853 * 19 17 15 23 23 C 1.46849 * 111.20078 * 298.25056 * 8 7 6 24 24 H 1.09006 * 109.46831 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46951 * 299.99428 * 1 2 3 26 26 H 1.09004 * 109.47647 * 59.99838 * 1 2 3 27 27 H 1.08999 * 109.52364 * 57.69141 * 5 3 2 28 28 H 1.09007 * 109.52029 * 297.50014 * 5 3 2 29 29 H 1.09002 * 109.49867 * 182.41037 * 6 5 3 30 30 H 1.08997 * 109.50786 * 62.28484 * 6 5 3 31 31 H 1.08996 * 109.46229 * 299.16846 * 7 6 5 32 32 H 1.09003 * 109.45624 * 179.19871 * 7 6 5 33 33 H 1.08998 * 109.47370 * 173.83789 * 9 8 7 34 34 H 1.09007 * 109.47262 * 53.83782 * 9 8 7 35 35 H 1.09003 * 109.47382 * 64.99991 * 14 10 9 36 36 H 1.09003 * 109.47578 * 304.99940 * 14 10 9 37 37 H 0.97005 * 119.99730 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.46559 * 181.75995 * 23 8 7 39 39 H 1.09002 * 109.45945 * 301.73212 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3465 2.0000 -0.5151 5 6 2.2182 1.7724 1.4433 6 6 2.8958 3.1455 1.4346 7 6 4.2215 3.0498 0.6760 8 7 3.9688 2.6001 -0.6988 9 6 5.2015 2.6292 -1.4972 10 6 5.6633 4.0777 -1.6698 11 1 5.7915 4.5373 -0.6899 12 6 4.6532 4.8269 -2.4348 13 7 3.8735 5.4050 -3.0252 14 6 6.9949 4.1021 -2.4229 15 6 7.5106 5.5168 -2.4856 16 1 6.9448 6.3183 -2.0339 17 6 8.7040 5.7880 -3.1205 18 7 9.3921 4.8122 -3.6718 19 14 9.3436 7.5414 -3.1976 20 1 10.6360 7.5653 -3.9286 21 1 8.3579 8.3971 -3.9057 22 1 9.5455 8.0557 -1.8192 23 6 3.3615 1.2632 -0.7171 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 2.8503 1.0575 1.9700 28 1 1.2532 1.8457 1.9451 29 1 3.0853 3.4643 2.4596 30 1 2.2461 3.8689 0.9420 31 1 4.8759 2.3365 1.1770 32 1 4.6997 4.0291 0.6557 33 1 5.0108 2.1896 -2.4763 34 1 5.9780 2.0586 -0.9877 35 1 6.8472 3.7240 -3.4345 36 1 7.7183 3.4745 -1.9024 37 1 10.2320 5.0030 -4.1182 38 1 3.2152 0.9448 -1.7492 39 1 4.0201 0.5583 -0.2096 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171988758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:34 Heat of formation + Delta-G solvation = -33.121951 kcal Electronic energy + Delta-G solvation = -18647.794597 eV Core-core repulsion = 15782.910922 eV Total energy + Delta-G solvation = -2864.883674 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58231 -37.60243 -35.99311 -33.93807 -32.93136 -31.25009 -30.15546 -26.95318 -26.66940 -24.43200 -22.98742 -22.07195 -21.52864 -19.93046 -17.00796 -16.58638 -16.37605 -15.88168 -15.34535 -15.11222 -14.62423 -14.43647 -14.10377 -13.72065 -13.32267 -13.06481 -12.79877 -12.67651 -12.25659 -11.95736 -11.92594 -11.50812 -11.27035 -11.13578 -11.08123 -11.01942 -10.86428 -10.68958 -10.60267 -10.50936 -10.08525 -9.68963 -9.49012 -9.22565 -8.45151 -8.21878 -6.09197 -4.12466 3.31328 3.35705 3.35882 3.40122 3.76191 3.85179 4.21714 4.41823 4.66642 4.73145 4.92504 4.93185 5.04160 5.16546 5.22324 5.25783 5.28889 5.44347 5.49323 5.53217 5.57144 5.61252 5.75334 5.83524 5.85953 5.97109 5.99945 6.06997 6.24444 6.37274 6.51051 6.97576 7.15209 7.23362 7.42896 7.53302 7.85751 8.23400 8.60186 8.91995 9.52933 11.01676 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040653 B = 0.004236 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.585754 B = 6608.768503 C = 6656.907858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.091 3.909 4 H 0.069 0.931 5 C -0.140 4.140 6 C -0.114 4.114 7 C 0.047 3.953 8 N -0.540 5.540 9 C 0.065 3.935 10 C 0.010 3.990 11 H 0.100 0.900 12 C 0.257 3.743 13 N -0.480 5.480 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.286 1.286 21 H -0.277 1.277 22 H -0.275 1.275 23 C 0.062 3.938 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.026 0.974 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.657 -9.190 10.787 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.033 3.967 4 H 0.087 0.913 5 C -0.178 4.178 6 C -0.152 4.152 7 C -0.081 4.081 8 N -0.266 5.266 9 C -0.064 4.064 10 C -0.012 4.012 11 H 0.118 0.882 12 C -0.060 4.060 13 N -0.157 5.157 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.066 4.066 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.899 -8.211 9.585 18.775 hybrid contribution 1.093 0.420 0.493 1.271 sum -12.805 -7.791 10.079 18.063 Atomic orbital electron populations 1.22758 0.81164 1.02467 0.99964 1.87854 1.19563 1.28073 1.95089 1.22107 0.95124 0.84052 0.95402 0.91306 1.22075 1.01013 0.97641 0.97054 1.21540 0.96920 0.96674 1.00104 1.22228 0.96574 1.01346 0.87945 1.61844 1.27734 1.24610 1.12365 1.22223 0.89531 0.96443 0.98160 1.19262 0.92427 0.90956 0.98528 0.88202 1.28834 0.92019 0.92458 0.92667 1.80978 1.13057 1.10695 1.10993 1.19173 0.87631 0.98303 0.95620 1.21100 1.05883 0.93017 1.36500 0.92558 1.24947 0.96735 0.97146 0.95092 1.69928 1.15070 1.31559 1.36465 0.86656 0.78119 0.84978 0.78332 1.21197 1.20210 1.20062 1.21949 0.93937 0.89851 1.00883 0.89806 0.94224 0.93982 0.91365 0.92038 0.91115 0.91084 0.94371 0.89621 0.90060 0.92633 0.95529 0.94432 0.92735 0.90164 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.38 16 2 O -0.39 -4.53 10.35 -35.23 -0.36 -4.90 16 3 C 0.09 1.05 2.77 -26.65 -0.07 0.98 16 4 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 5 C -0.14 -1.43 5.62 -26.61 -0.15 -1.58 16 6 C -0.11 -1.20 6.09 -26.65 -0.16 -1.36 16 7 C 0.05 0.56 5.30 -3.83 -0.02 0.54 16 8 N -0.54 -7.39 4.32 -234.67 -1.01 -8.41 16 9 C 0.06 0.97 4.34 -3.82 -0.02 0.96 16 10 C 0.01 0.19 2.12 -93.41 -0.20 -0.01 16 11 H 0.10 1.71 6.29 -51.93 -0.33 1.39 16 12 C 0.26 5.39 13.64 -20.76 -0.28 5.10 16 13 N -0.48 -10.94 18.54 42.16 0.78 -10.16 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -13.99 8.60 -34.44 -0.30 -14.29 16 16 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.06 0.77 5.11 -3.83 -0.02 0.75 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.30 7.94 -51.93 -0.41 -0.11 16 26 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.57 7.94 -51.92 -0.41 0.15 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.07 6.16 -51.93 -0.32 0.75 16 33 H 0.08 1.23 7.98 -51.93 -0.41 0.82 16 34 H 0.06 0.77 8.12 -51.92 -0.42 0.35 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.08 1.02 8.01 -51.93 -0.42 0.60 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -30.12 320.99 -6.85 -36.97 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -6.46 Total: -4.54 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.35 Total: -5.29 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.50 Total: -43.32 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.36 Total: -4.90 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.12 -6.85 -36.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171988758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.851 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds