Wall clock time and date at job start Sun Mar 29 2020 23:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00244 * 2 1 4 4 C 1.53005 * 109.47130 * 77.96283 * 3 2 1 5 5 H 1.09000 * 109.46705 * 53.08184 * 4 3 2 6 6 C 1.47195 * 109.47404 * 293.07867 * 4 3 2 7 7 N 3.69335 * 55.70940 * 42.33221 * 2 1 3 8 8 C 1.52994 * 109.46923 * 173.07421 * 4 3 2 9 9 C 1.50699 * 109.47200 * 185.00093 * 8 4 3 10 10 H 1.08001 * 120.00132 * 0.02562 * 9 8 4 11 11 C 1.37882 * 120.00105 * 180.02562 * 9 8 4 12 12 N 1.31509 * 120.00018 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99967 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46803 * 269.99979 * 13 11 9 15 15 H 1.48504 * 109.46913 * 149.99689 * 13 11 9 16 16 H 1.48502 * 109.46997 * 30.00106 * 13 11 9 17 17 C 1.46894 * 111.00267 * 236.04350 * 2 1 3 18 18 C 1.52995 * 109.47566 * 199.90675 * 17 2 1 19 19 H 1.08999 * 110.80345 * 308.34949 * 18 17 2 20 20 C 1.54812 * 110.90877 * 184.72327 * 18 17 2 21 21 C 1.54105 * 104.18766 * 220.91854 * 20 18 17 22 22 O 1.43741 * 107.29076 * 357.97010 * 21 20 18 23 23 C 1.44383 * 106.97806 * 26.51518 * 22 21 20 24 24 H 1.08995 * 109.46895 * 51.87571 * 1 2 3 25 25 H 1.09002 * 109.46746 * 171.87727 * 1 2 3 26 26 H 1.08997 * 109.46645 * 291.87259 * 1 2 3 27 27 H 1.08999 * 109.46796 * 317.96457 * 3 2 1 28 28 H 1.08999 * 109.47360 * 197.96542 * 3 2 1 29 29 H 1.09005 * 109.47077 * 65.00543 * 8 4 3 30 30 H 1.09000 * 109.47643 * 305.00718 * 8 4 3 31 31 H 0.97006 * 120.00130 * 0.02562 * 12 11 9 32 32 H 1.09003 * 109.47099 * 319.90404 * 17 2 1 33 33 H 1.09002 * 109.46886 * 79.90526 * 17 2 1 34 34 H 1.08996 * 110.48730 * 339.59747 * 20 18 17 35 35 H 1.09005 * 110.48787 * 102.11571 * 20 18 17 36 36 H 1.08998 * 109.87650 * 117.39011 * 21 20 18 37 37 H 1.09000 * 109.87978 * 238.54696 * 21 20 18 38 38 H 1.09003 * 110.61374 * 201.43876 * 23 22 21 39 39 H 1.08991 * 110.61915 * 78.44083 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8975 1.9554 1.4108 5 1 2.3757 1.2781 2.1184 6 6 0.4813 2.1249 1.7744 7 7 -0.6118 2.2558 2.0549 8 6 2.6004 3.3137 1.4505 9 6 2.6114 3.8326 2.8653 10 1 2.1623 3.2514 3.6571 11 6 3.1947 5.0493 3.1489 12 7 3.7420 5.7568 2.1849 13 14 3.2089 5.6921 4.9028 14 1 1.9876 6.5021 5.1430 15 1 4.4123 6.5371 5.1106 16 1 3.2381 4.5479 5.8491 17 6 1.9955 -0.7660 -1.1375 18 6 3.4445 -1.1678 -0.8550 19 1 4.0365 -0.3009 -0.5617 20 6 4.0708 -1.8753 -2.0813 21 6 4.8873 -3.0324 -1.4737 22 8 4.7639 -2.9380 -0.0447 23 6 3.5103 -2.2753 0.2274 24 1 -0.3633 0.6344 -0.8084 25 1 -0.3633 -1.0174 -0.1452 26 1 -0.3632 0.3829 0.9537 27 1 1.4132 1.9841 -0.6881 28 1 3.0384 1.3603 -0.3170 29 1 2.0684 4.0170 0.8097 30 1 3.6252 3.2031 1.0961 31 1 3.7350 5.4228 1.2741 32 1 1.3918 -1.6619 -1.2828 33 1 1.9576 -0.1523 -2.0375 34 1 3.2914 -2.2619 -2.7379 35 1 4.7218 -1.1908 -2.6253 36 1 4.4897 -3.9871 -1.8177 37 1 5.9342 -2.9388 -1.7623 38 1 3.5167 -1.8368 1.2253 39 1 2.6774 -2.9696 0.1174 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178337939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:36 Heat of formation + Delta-G solvation = -28.501826 kcal Electronic energy + Delta-G solvation = -18688.852524 eV Core-core repulsion = 15824.169193 eV Total energy + Delta-G solvation = -2864.683331 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.69025 -38.14274 -35.81437 -34.03854 -32.77214 -31.55001 -29.56489 -27.07617 -26.43217 -24.14805 -22.85770 -22.06978 -21.53655 -20.31374 -17.23180 -16.77902 -16.65954 -15.96387 -15.43370 -15.07127 -14.71788 -14.49970 -13.80320 -13.71249 -13.32953 -13.14470 -12.85769 -12.65175 -12.37483 -12.09660 -11.85184 -11.63823 -11.45198 -11.37130 -11.24021 -11.01065 -10.91256 -10.67769 -10.50968 -10.38184 -10.14281 -9.86548 -9.74585 -8.68248 -8.40649 -8.33491 -6.43381 -4.14451 3.44048 3.45686 3.50866 3.56335 3.62393 3.75869 3.96542 4.48785 4.50572 4.60386 4.70243 4.80817 4.89271 5.09198 5.24169 5.31707 5.34880 5.36158 5.47093 5.48643 5.54789 5.58232 5.66085 5.69033 5.78001 5.93939 5.96494 6.01076 6.10298 6.23528 6.39312 6.80230 7.02089 7.02285 7.09268 7.24848 8.03281 8.30024 8.40240 8.79297 9.56636 10.97404 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.005000 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.701374 B = 5598.393270 C = 6262.676526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.542 5.542 3 C 0.060 3.940 4 C 0.017 3.983 5 H 0.111 0.889 6 C 0.252 3.748 7 N -0.479 5.479 8 C 0.018 3.982 9 C -0.605 4.605 10 H 0.051 0.949 11 C 0.021 3.979 12 N -0.909 5.909 13 Si 1.068 2.932 14 H -0.288 1.288 15 H -0.283 1.283 16 H -0.287 1.287 17 C 0.065 3.935 18 C -0.118 4.118 19 H 0.093 0.907 20 C -0.153 4.153 21 C 0.048 3.952 22 O -0.383 6.383 23 C 0.062 3.938 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.014 0.986 30 H 0.029 0.971 31 H 0.269 0.731 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -15.798 -9.933 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.265 5.265 3 C -0.069 4.069 4 C -0.005 4.005 5 H 0.129 0.871 6 C -0.064 4.064 7 N -0.156 5.156 8 C -0.020 4.020 9 C -0.643 4.643 10 H 0.070 0.930 11 C -0.184 4.184 12 N -0.545 5.545 13 Si 0.896 3.104 14 H -0.215 1.215 15 H -0.209 1.209 16 H -0.213 1.213 17 C -0.063 4.063 18 C -0.137 4.137 19 H 0.111 0.889 20 C -0.191 4.191 21 C -0.029 4.029 22 O -0.302 6.302 23 C -0.015 4.015 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.409 -14.647 -7.978 16.684 hybrid contribution -0.597 -0.786 -2.012 2.241 sum -1.006 -15.433 -9.990 18.412 Atomic orbital electron populations 1.22714 0.87248 1.01257 1.02351 1.62017 1.07791 1.14320 1.42413 1.22360 1.01066 0.87228 0.96265 1.19129 0.83763 1.01606 0.95994 0.87093 1.29077 0.94677 0.90640 0.92015 1.81035 1.13614 1.11045 1.09916 1.19284 0.95112 0.88774 0.98851 1.21991 1.41914 1.07374 0.93059 0.93039 1.25785 0.93139 0.93729 1.05698 1.70779 1.41989 1.39836 1.01903 0.83546 0.76775 0.75843 0.74198 1.21505 1.20862 1.21294 1.22087 0.94541 0.97757 0.91928 1.22761 0.96340 0.99578 0.94997 0.88899 1.22976 0.99922 0.97924 0.98292 1.23098 1.00562 0.97390 0.81865 1.88884 1.39730 1.80201 1.21345 1.23541 0.85679 0.92182 1.00052 0.95645 0.91758 0.90235 0.93993 0.89114 0.96772 0.95239 0.92067 0.90853 0.94183 0.90802 0.90404 0.92775 0.90118 0.88096 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.96 60.07 0.54 0.70 16 2 N -0.54 -6.95 4.54 -242.92 -1.10 -8.05 16 3 C 0.06 0.87 4.46 -3.82 -0.02 0.85 16 4 C 0.02 0.32 2.41 -93.41 -0.22 0.09 16 5 H 0.11 2.02 8.14 -51.93 -0.42 1.59 16 6 C 0.25 5.13 11.13 -20.76 -0.23 4.90 16 7 N -0.48 -10.41 17.63 42.15 0.74 -9.66 16 8 C 0.02 0.42 3.73 -27.89 -0.10 0.32 16 9 C -0.61 -16.30 8.60 -34.44 -0.30 -16.60 16 10 H 0.05 1.40 7.59 -52.49 -0.40 1.00 16 11 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 12 N -0.91 -26.73 13.65 55.43 0.76 -25.98 16 13 Si 1.07 25.12 29.90 -169.99 -5.08 20.04 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 17 C 0.06 0.66 4.30 -3.83 -0.02 0.65 16 18 C -0.12 -1.20 3.15 -88.61 -0.28 -1.48 16 19 H 0.09 1.06 6.74 -51.93 -0.35 0.71 16 20 C -0.15 -1.27 6.60 -25.20 -0.17 -1.44 16 21 C 0.05 0.44 7.70 37.73 0.29 0.73 16 22 O -0.38 -4.79 11.52 -35.23 -0.41 -5.20 16 23 C 0.06 0.69 7.11 38.21 0.27 0.96 16 24 H 0.02 0.33 7.89 -51.93 -0.41 -0.08 16 25 H 0.06 0.71 7.77 -51.93 -0.40 0.31 16 26 H 0.08 1.25 4.76 -51.93 -0.25 1.00 16 27 H 0.04 0.62 7.78 -51.93 -0.40 0.22 16 28 H 0.09 1.21 6.48 -51.93 -0.34 0.88 16 29 H 0.01 0.34 8.01 -51.93 -0.42 -0.07 16 30 H 0.03 0.67 8.01 -51.93 -0.42 0.26 16 31 H 0.27 7.74 7.22 -40.82 -0.29 7.44 16 32 H 0.07 0.67 7.54 -51.93 -0.39 0.28 16 33 H 0.04 0.40 8.00 -51.93 -0.42 -0.02 16 34 H 0.07 0.52 7.86 -51.93 -0.41 0.11 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.06 0.59 7.93 -51.93 -0.41 0.17 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -30.51 316.48 -6.87 -37.37 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -6.21 Total: -3.47 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.33 Total: -9.82 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.40 Total: -43.69 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.41 Total: -5.20 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.51 -6.87 -37.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178337939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.871 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds