Wall clock time and date at job start Sun Mar 29 2020 23:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99984 * 2 1 4 4 C 1.50695 * 109.47089 * 293.95119 * 3 2 1 5 5 N 1.30518 * 126.34800 * 275.02521 * 4 3 2 6 6 N 1.28604 * 109.67691 * 179.73653 * 5 4 3 7 7 C 1.30521 * 109.66535 * 0.02562 * 6 5 4 8 8 N 1.35492 * 107.31299 * 0.02562 * 7 6 5 9 9 H 0.96993 * 126.98343 * 180.02562 * 8 7 6 10 10 C 1.46898 * 110.99854 * 123.95570 * 2 1 3 11 11 C 1.52996 * 109.47367 * 85.43319 * 10 2 1 12 12 C 1.53000 * 109.47400 * 300.38002 * 11 10 2 13 13 C 1.53008 * 109.46981 * 60.37910 * 11 10 2 14 14 C 1.53006 * 109.47263 * 180.37583 * 11 10 2 15 15 C 1.50696 * 109.46802 * 180.02562 * 14 11 10 16 16 H 1.07997 * 120.00570 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99673 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99827 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99921 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47355 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47041 * 119.99793 * 19 17 15 22 22 H 1.48501 * 109.47063 * 239.99650 * 19 17 15 23 23 H 1.09007 * 109.46916 * 67.38959 * 1 2 3 24 24 H 1.08994 * 109.47323 * 187.38391 * 1 2 3 25 25 H 1.08999 * 109.47333 * 307.38979 * 1 2 3 26 26 H 1.08999 * 109.46668 * 173.95167 * 3 2 1 27 27 H 1.08997 * 109.46926 * 53.95412 * 3 2 1 28 28 H 1.08003 * 126.34041 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.47092 * 205.43457 * 10 2 1 30 30 H 1.08997 * 109.47310 * 325.43274 * 10 2 1 31 31 H 1.08993 * 109.46937 * 68.64740 * 12 11 10 32 32 H 1.09000 * 109.47131 * 188.65201 * 12 11 10 33 33 H 1.09008 * 109.46442 * 308.65128 * 12 11 10 34 34 H 1.08999 * 109.47145 * 59.99579 * 13 11 10 35 35 H 1.08996 * 109.47078 * 179.97438 * 13 11 10 36 36 H 1.09007 * 109.46856 * 300.00023 * 13 11 10 37 37 H 1.09004 * 109.46693 * 300.00075 * 14 11 10 38 38 H 1.08998 * 109.46834 * 59.99778 * 14 11 10 39 39 H 0.97004 * 119.99975 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 -1.2984 5 7 2.3037 1.9744 -2.4181 6 7 1.7091 2.6695 -3.3221 7 6 0.6363 3.2177 -2.8198 8 7 0.5604 2.8391 -1.5211 9 1 -0.1260 3.0841 -0.8810 10 6 1.9954 -0.7660 1.1376 11 6 2.0709 -2.2476 0.7636 12 6 0.6735 -2.7540 0.4007 13 6 3.0046 -2.4239 -0.4357 14 6 2.6104 -3.0467 1.9516 15 6 2.6854 -4.5060 1.5829 16 1 2.3786 -4.8311 0.5998 17 6 3.1447 -5.4263 2.5012 18 7 3.5179 -5.0305 3.6985 19 14 3.2370 -7.2352 2.0444 20 1 2.7623 -7.4184 0.6494 21 1 4.6423 -7.7026 2.1550 22 1 2.3795 -8.0228 2.9661 23 1 -0.3633 0.3951 -0.9488 24 1 -0.3634 -1.0191 0.1321 25 1 -0.3634 0.6240 0.8165 26 1 3.0797 1.3444 0.1083 27 1 1.5611 1.9273 0.8309 28 1 -0.0615 3.8550 -3.3426 29 1 2.9920 -0.4036 1.3896 30 1 1.3356 -0.6412 1.9961 31 1 0.3523 -2.2951 -0.5343 32 1 0.6986 -3.8374 0.2840 33 1 -0.0259 -2.4900 1.1940 34 1 4.0002 -2.0631 -0.1773 35 1 3.0588 -3.4795 -0.7019 36 1 2.6203 -1.8546 -1.2821 37 1 3.6060 -2.6859 2.2100 38 1 1.9453 -2.9211 2.8060 39 1 3.8414 -5.6779 4.3444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179799097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:13 Heat of formation + Delta-G solvation = 79.179066 kcal Electronic energy + Delta-G solvation = -18957.011438 eV Core-core repulsion = 16129.290252 eV Total energy + Delta-G solvation = -2827.721186 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.18668 -38.45949 -35.29277 -33.76296 -32.30158 -31.05145 -28.09248 -27.20765 -26.48908 -25.92978 -23.51677 -22.87921 -21.99595 -21.02861 -18.47261 -17.84407 -16.28168 -16.16758 -15.63833 -15.21250 -14.84699 -14.69226 -14.34233 -13.29358 -13.03133 -12.85565 -12.75979 -12.23346 -11.99592 -11.82260 -11.62099 -11.27675 -10.94747 -10.87704 -10.72044 -10.62261 -10.51061 -10.37635 -10.36044 -9.99324 -9.59662 -9.40620 -8.95275 -8.86401 -8.30291 -8.13121 -5.95078 -3.94541 1.66340 2.61394 2.81269 3.34123 3.42166 3.46212 4.07199 4.23553 4.51347 4.62318 4.77700 5.22928 5.29872 5.32296 5.41282 5.41501 5.54438 5.68050 5.85065 5.96342 5.98008 6.02732 6.19618 6.30923 6.53429 6.75081 6.79789 6.87476 6.90607 7.11814 7.14767 7.26172 7.36142 7.43270 7.71906 7.86530 8.05639 8.50566 8.66153 9.11035 9.68315 11.16673 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.048289 B = 0.004248 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.705654 B = 6589.050559 C = 6688.342271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.525 5.525 3 C 0.137 3.863 4 C 0.197 3.803 5 N -0.274 5.274 6 N -0.298 5.298 7 C 0.145 3.855 8 N -0.585 5.585 9 H 0.426 0.574 10 C 0.066 3.934 11 C -0.051 4.051 12 C -0.133 4.133 13 C -0.117 4.117 14 C 0.033 3.967 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 H 0.052 0.948 24 H 0.100 0.900 25 H 0.018 0.982 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.219 0.781 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.012 0.988 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.827 16.284 -6.312 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 N -0.249 5.249 3 C 0.007 3.993 4 C -0.072 4.072 5 N -0.115 5.115 6 N -0.139 5.139 7 C -0.144 4.144 8 N -0.198 5.198 9 H 0.265 0.735 10 C -0.060 4.060 11 C -0.051 4.051 12 C -0.190 4.190 13 C -0.174 4.174 14 C -0.005 4.005 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.715 3.285 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.212 1.212 23 H 0.071 0.929 24 H 0.118 0.882 25 H 0.037 0.963 26 H 0.129 0.871 27 H 0.067 0.933 28 H 0.235 0.765 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.397 15.569 -7.707 18.881 hybrid contribution -1.708 -0.011 1.838 2.510 sum -9.105 15.558 -5.868 18.958 Atomic orbital electron populations 1.22981 0.88013 1.04456 0.99203 1.61888 1.07414 1.10101 1.45504 1.20520 1.02487 0.88996 0.87303 1.24879 0.87061 0.95922 0.99368 1.74324 1.24231 1.16445 0.96540 1.74306 1.05580 1.09540 1.24434 1.26447 1.01006 1.04082 0.82822 1.44217 1.23359 1.39502 1.12740 0.73513 1.22398 0.98981 0.95434 0.89212 1.20567 0.95466 0.90935 0.98167 1.21995 0.96185 1.02153 0.98639 1.21605 0.97870 1.01067 0.96889 1.19140 0.95763 0.94190 0.91378 1.21279 1.41893 0.92105 0.99014 0.92166 1.25008 0.95795 0.98679 0.95107 1.69975 1.44669 1.33991 1.05213 0.86617 0.77593 0.85798 0.78499 1.19737 1.21143 1.21250 0.92918 0.88180 0.96307 0.87133 0.93277 0.76512 0.91227 0.94423 0.93701 0.91680 0.94444 0.94286 0.92734 0.93532 0.96659 0.96982 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 8.52 60.06 0.51 0.53 16 2 N -0.52 -7.29 3.77 -244.38 -0.92 -8.21 16 3 C 0.14 1.59 5.53 -4.98 -0.03 1.57 16 4 C 0.20 2.40 6.82 -154.99 -1.06 1.35 16 5 N -0.27 -4.32 12.21 32.79 0.40 -3.92 16 6 N -0.30 -4.27 12.21 29.69 0.36 -3.90 16 7 C 0.15 1.33 13.19 -89.95 -1.19 0.14 16 8 N -0.58 -4.87 6.01 -11.36 -0.07 -4.94 16 9 H 0.43 1.96 8.96 -40.82 -0.37 1.59 16 10 C 0.07 1.07 4.23 -3.83 -0.02 1.05 16 11 C -0.05 -0.99 0.60 -154.50 -0.09 -1.09 16 12 C -0.13 -2.45 6.67 37.16 0.25 -2.20 16 13 C -0.12 -2.32 8.06 37.16 0.30 -2.02 16 14 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 15 C -0.50 -13.71 7.53 -34.44 -0.26 -13.97 16 16 H 0.06 1.61 5.72 -52.49 -0.30 1.31 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H 0.05 0.61 7.37 -51.92 -0.38 0.23 16 24 H 0.10 1.33 3.89 -51.93 -0.20 1.13 16 25 H 0.02 0.19 8.04 -51.93 -0.42 -0.23 16 26 H 0.11 1.32 7.79 -51.93 -0.40 0.92 16 27 H 0.05 0.45 8.04 -51.93 -0.42 0.03 16 28 H 0.22 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.07 1.11 7.57 -51.93 -0.39 0.72 16 30 H 0.04 0.60 7.85 -51.93 -0.41 0.19 16 31 H 0.04 0.75 6.21 -51.93 -0.32 0.43 16 32 H 0.06 1.33 6.38 -51.93 -0.33 1.00 16 33 H 0.04 0.65 7.48 -51.92 -0.39 0.26 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.16 6.62 -51.93 -0.34 0.82 16 36 H 0.05 0.88 7.61 -51.93 -0.40 0.48 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -33.33 309.32 -7.54 -40.86 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.90 Total: -2.69 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.79 Total: -12.51 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.51 Total: -46.91 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.33 -7.54 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179799097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.044 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds