Wall clock time and date at job start Sun Mar 29 2020 23:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46931 * 2 1 4 4 N 1.46508 * 109.46837 * 185.19008 * 3 2 1 5 5 C 1.36933 * 119.99737 * 96.06266 * 4 3 2 6 6 H 1.08004 * 119.99871 * 170.51786 * 5 4 3 7 7 C 1.38819 * 120.00313 * 350.51014 * 5 4 3 8 8 N 1.31611 * 119.99925 * 333.29635 * 7 5 4 9 9 Si 1.86796 * 119.99768 * 153.29307 * 7 5 4 10 10 H 1.48506 * 109.47228 * 95.00073 * 9 7 5 11 11 H 1.48507 * 109.46917 * 214.99809 * 9 7 5 12 12 H 1.48498 * 109.47337 * 334.99755 * 9 7 5 13 13 C 1.46502 * 119.99923 * 276.06352 * 4 3 2 14 14 C 1.50696 * 109.46965 * 274.45836 * 13 4 3 15 15 N 1.30522 * 126.34661 * 275.62099 * 14 13 4 16 16 N 1.28598 * 109.67598 * 179.97438 * 15 14 13 17 17 C 1.30525 * 109.66947 * 0.02562 * 16 15 14 18 18 C 1.50698 * 126.34583 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.46937 * 89.97793 * 18 17 16 20 20 N 1.35493 * 107.30897 * 359.97438 * 17 16 15 21 21 C 1.46501 * 126.98147 * 179.97438 * 20 17 16 22 22 H 1.08995 * 109.47074 * 300.00228 * 1 2 3 23 23 H 1.09002 * 109.46893 * 59.99942 * 1 2 3 24 24 H 1.08996 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46885 * 240.00362 * 2 1 3 26 26 H 1.09002 * 109.46893 * 120.00057 * 2 1 3 27 27 H 1.08994 * 109.47333 * 65.19649 * 3 2 1 28 28 H 1.08995 * 109.47621 * 305.18685 * 3 2 1 29 29 H 0.97003 * 120.00059 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.46596 * 154.45916 * 13 4 3 31 31 H 1.09000 * 109.46933 * 34.46088 * 13 4 3 32 32 H 1.08994 * 109.47088 * 209.97246 * 18 17 16 33 33 H 1.08995 * 109.47334 * 329.97795 * 18 17 16 34 34 H 1.09000 * 109.47251 * 180.02562 * 19 18 17 35 35 H 1.09007 * 109.47008 * 299.99936 * 19 18 17 36 36 H 1.09001 * 109.47499 * 59.99729 * 19 18 17 37 37 H 1.09002 * 109.46454 * 84.98354 * 21 20 17 38 38 H 1.09001 * 109.47005 * 204.97739 * 21 20 17 39 39 H 1.08995 * 109.47005 * 324.98425 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4997 1.4444 -0.1250 5 6 4.0814 1.6060 -1.3540 6 1 5.1475 1.7609 -1.4307 7 6 3.3009 1.5706 -2.5014 8 7 2.1721 0.8939 -2.5089 9 14 3.8528 2.4835 -4.0348 10 1 4.5833 1.5508 -4.9303 11 1 2.6648 3.0225 -4.7445 12 1 4.7489 3.6030 -3.6489 13 6 4.3370 1.2733 1.0650 14 6 4.5480 2.6105 1.7271 15 7 5.4557 3.4944 1.4135 16 7 5.3474 4.5184 2.1837 17 6 4.3659 4.3341 3.0242 18 6 3.9116 5.2959 4.0917 19 6 2.8431 6.2280 3.5170 20 7 3.8305 3.1182 2.7583 21 6 2.7049 2.4812 3.4466 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.7547 1.9288 0.9328 28 1 1.6028 1.9825 -0.8398 29 1 1.6265 0.8695 -3.3106 30 1 5.3009 0.8558 0.7740 31 1 3.8433 0.5964 1.7623 32 1 3.4942 4.7379 4.9298 33 1 4.7616 5.8856 4.4350 34 1 2.5148 6.9241 4.2889 35 1 3.2605 6.7861 2.6788 36 1 1.9931 5.6384 3.1736 37 1 1.7686 2.8260 3.0077 38 1 2.7793 1.3990 3.3401 39 1 2.7294 2.7449 4.5039 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195101387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:43 Heat of formation + Delta-G solvation = 93.034658 kcal Electronic energy + Delta-G solvation = -19496.911501 eV Core-core repulsion = 16669.791139 eV Total energy + Delta-G solvation = -2827.120362 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.51203 -36.41910 -34.80823 -33.77790 -32.10864 -31.54233 -29.15124 -27.34300 -26.07289 -25.54805 -23.84863 -22.19432 -20.71281 -20.18280 -19.55400 -16.88273 -16.42445 -15.98854 -15.01587 -14.63783 -14.52321 -13.80123 -13.60338 -13.52947 -13.30223 -13.07464 -12.79901 -12.44408 -12.24159 -11.67823 -11.48243 -11.44027 -11.22610 -10.89926 -10.83860 -10.73658 -10.49133 -10.21402 -10.05662 -9.81171 -9.67619 -9.65159 -9.30653 -8.47749 -8.35917 -7.02428 -5.81778 -3.11315 2.34245 2.94851 3.41348 3.49946 3.51219 3.60582 4.53944 4.54903 4.79439 4.88647 5.10716 5.13240 5.25121 5.38929 5.42953 5.46578 5.48470 5.60207 5.72833 5.84791 6.08195 6.11945 6.14208 6.33891 6.39028 6.44624 6.53521 6.57508 6.76806 6.78877 7.05772 7.12540 7.41232 7.60012 7.74851 8.03958 8.27101 9.18354 9.41734 9.78052 10.20619 11.22486 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.007589 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.416375 B = 3688.759002 C = 4416.674047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.173 3.827 4 N -0.579 5.579 5 C -0.252 4.252 6 H 0.079 0.921 7 C 0.004 3.996 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.278 1.278 13 C 0.226 3.774 14 C 0.184 3.816 15 N -0.294 5.294 16 N -0.301 5.301 17 C 0.146 3.854 18 C -0.028 4.028 19 C -0.147 4.147 20 N -0.473 5.473 21 C 0.077 3.923 22 H 0.028 0.972 23 H 0.053 0.947 24 H 0.034 0.966 25 H 0.102 0.898 26 H 0.015 0.985 27 H -0.002 1.002 28 H 0.085 0.915 29 H 0.252 0.748 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.518 2.307 13.878 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.048 3.952 4 N -0.297 5.297 5 C -0.380 4.380 6 H 0.097 0.903 7 C -0.193 4.193 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.204 1.204 13 C 0.094 3.906 14 C -0.086 4.086 15 N -0.134 5.134 16 N -0.141 5.141 17 C -0.121 4.121 18 C -0.068 4.068 19 C -0.205 4.205 20 N -0.166 5.166 21 C -0.066 4.066 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.120 0.880 26 H 0.034 0.966 27 H 0.016 0.984 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.482 2.914 12.980 13.533 hybrid contribution -1.056 -0.069 -0.200 1.077 sum -3.538 2.845 12.780 13.562 Atomic orbital electron populations 1.21596 0.98262 0.99379 1.00064 1.22050 0.93167 1.00015 1.01198 1.20821 0.82283 0.94853 0.97209 1.44151 1.01211 1.82623 1.01757 1.19303 0.93529 1.42783 0.82394 0.90321 1.24674 0.97483 0.99785 0.97371 1.70180 1.15797 1.39654 1.28021 0.86447 0.77638 0.80785 0.83119 1.21607 1.21718 1.20368 1.19197 0.97475 0.85182 0.88756 1.27231 0.90864 1.02083 0.88453 1.74229 1.21060 0.98318 1.19760 1.74156 1.16146 1.19323 1.04498 1.24608 0.96890 0.88004 1.02624 1.19838 0.99838 0.94341 0.92790 1.21737 0.98089 0.99096 1.01578 1.46089 1.27314 1.15358 1.27809 1.21985 0.87917 0.99646 0.97082 0.95299 0.92746 0.94696 0.87965 0.96591 0.98404 0.89712 0.93817 0.89540 0.92788 0.90716 0.88920 0.91764 0.91800 0.92794 0.90379 0.89067 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.12 -2.60 5.66 -26.73 -0.15 -2.75 16 3 C 0.17 3.90 4.90 -4.04 -0.02 3.88 16 4 N -0.58 -13.83 2.52 -174.60 -0.44 -14.27 16 5 C -0.25 -6.81 9.65 -15.06 -0.15 -6.96 16 6 H 0.08 2.19 7.96 -52.48 -0.42 1.77 16 7 C 0.00 0.11 4.83 -17.43 -0.08 0.03 16 8 N -0.89 -24.05 8.74 55.49 0.48 -23.57 16 9 Si 0.89 22.06 29.63 -169.99 -5.04 17.03 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.23 4.57 6.09 -5.19 -0.03 4.54 16 14 C 0.18 3.76 7.61 -154.98 -1.18 2.58 16 15 N -0.29 -6.84 12.21 32.80 0.40 -6.44 16 16 N -0.30 -6.40 12.21 32.80 0.40 -6.00 16 17 C 0.15 2.48 7.28 -154.98 -1.13 1.35 16 18 C -0.03 -0.33 6.29 -27.88 -0.18 -0.50 16 19 C -0.15 -1.59 9.89 37.16 0.37 -1.22 16 20 N -0.47 -7.90 3.15 -118.00 -0.37 -8.27 16 21 C 0.08 0.90 10.29 59.85 0.62 1.51 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.10 2.51 6.37 -51.93 -0.33 2.18 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.00 -0.05 7.11 -51.93 -0.37 -0.41 16 28 H 0.08 2.20 5.99 -51.93 -0.31 1.89 16 29 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.09 1.77 8.00 -51.93 -0.42 1.35 16 31 H 0.05 0.94 6.94 -51.93 -0.36 0.58 16 32 H 0.07 0.66 7.33 -51.93 -0.38 0.28 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.90 7.74 -51.93 -0.40 0.49 16 38 H 0.09 1.00 6.96 -51.93 -0.36 0.63 16 39 H 0.08 0.68 7.36 -51.93 -0.38 0.30 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -31.67 317.40 -7.59 -39.26 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.25 Total: -2.94 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.56 Total: 0.42 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.48 Total: -58.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.04 Total: 17.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.67 -7.59 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195101387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.299 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds