Wall clock time and date at job start Sun Mar 29 2020 23:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46931 * 2 1 4 4 N 1.46508 * 109.46837 * 185.19008 * 3 2 1 5 5 C 1.36933 * 119.99737 * 96.06266 * 4 3 2 6 6 H 1.08004 * 119.99871 * 170.51786 * 5 4 3 7 7 C 1.38819 * 120.00313 * 350.51014 * 5 4 3 8 8 N 1.31611 * 119.99925 * 333.29635 * 7 5 4 9 9 Si 1.86796 * 119.99768 * 153.29307 * 7 5 4 10 10 H 1.48506 * 109.47228 * 95.00073 * 9 7 5 11 11 H 1.48507 * 109.46917 * 214.99809 * 9 7 5 12 12 H 1.48498 * 109.47337 * 334.99755 * 9 7 5 13 13 C 1.46502 * 119.99923 * 276.06352 * 4 3 2 14 14 C 1.50696 * 109.46965 * 274.45836 * 13 4 3 15 15 N 1.30522 * 126.34661 * 275.62099 * 14 13 4 16 16 N 1.28598 * 109.67598 * 179.97438 * 15 14 13 17 17 C 1.30525 * 109.66947 * 0.02562 * 16 15 14 18 18 C 1.50698 * 126.34583 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.46937 * 89.97793 * 18 17 16 20 20 N 1.35493 * 107.30897 * 359.97438 * 17 16 15 21 21 C 1.46501 * 126.98147 * 179.97438 * 20 17 16 22 22 H 1.08995 * 109.47074 * 300.00228 * 1 2 3 23 23 H 1.09002 * 109.46893 * 59.99942 * 1 2 3 24 24 H 1.08996 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46885 * 240.00362 * 2 1 3 26 26 H 1.09002 * 109.46893 * 120.00057 * 2 1 3 27 27 H 1.08994 * 109.47333 * 65.19649 * 3 2 1 28 28 H 1.08995 * 109.47621 * 305.18685 * 3 2 1 29 29 H 0.97003 * 120.00059 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.46596 * 154.45916 * 13 4 3 31 31 H 1.09000 * 109.46933 * 34.46088 * 13 4 3 32 32 H 1.08994 * 109.47088 * 209.97246 * 18 17 16 33 33 H 1.08995 * 109.47334 * 329.97795 * 18 17 16 34 34 H 1.09000 * 109.47251 * 180.02562 * 19 18 17 35 35 H 1.09007 * 109.47008 * 299.99936 * 19 18 17 36 36 H 1.09001 * 109.47499 * 59.99729 * 19 18 17 37 37 H 1.09002 * 109.46454 * 84.98354 * 21 20 17 38 38 H 1.09001 * 109.47005 * 204.97739 * 21 20 17 39 39 H 1.08995 * 109.47005 * 324.98425 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4997 1.4444 -0.1250 5 6 4.0814 1.6060 -1.3540 6 1 5.1475 1.7609 -1.4307 7 6 3.3009 1.5706 -2.5014 8 7 2.1721 0.8939 -2.5089 9 14 3.8528 2.4835 -4.0348 10 1 4.5833 1.5508 -4.9303 11 1 2.6648 3.0225 -4.7445 12 1 4.7489 3.6030 -3.6489 13 6 4.3370 1.2733 1.0650 14 6 4.5480 2.6105 1.7271 15 7 5.4557 3.4944 1.4135 16 7 5.3474 4.5184 2.1837 17 6 4.3659 4.3341 3.0242 18 6 3.9116 5.2959 4.0917 19 6 2.8431 6.2280 3.5170 20 7 3.8305 3.1182 2.7583 21 6 2.7049 2.4812 3.4466 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.7547 1.9288 0.9328 28 1 1.6028 1.9825 -0.8398 29 1 1.6265 0.8695 -3.3106 30 1 5.3009 0.8558 0.7740 31 1 3.8433 0.5964 1.7623 32 1 3.4942 4.7379 4.9298 33 1 4.7616 5.8856 4.4350 34 1 2.5148 6.9241 4.2889 35 1 3.2605 6.7861 2.6788 36 1 1.9931 5.6384 3.1736 37 1 1.7686 2.8260 3.0077 38 1 2.7793 1.3990 3.3401 39 1 2.7294 2.7449 4.5039 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195101387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:43 Heat of formation + Delta-G solvation = 74.935872 kcal Electronic energy + Delta-G solvation = -19497.696323 eV Core-core repulsion = 16669.791139 eV Total energy + Delta-G solvation = -2827.905184 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.93495 -38.20581 -36.06548 -34.97969 -33.75285 -33.33177 -30.66056 -28.46754 -27.64653 -27.34235 -24.92808 -23.96729 -22.25403 -21.42209 -21.19052 -18.76278 -17.69975 -17.49988 -16.75550 -15.91796 -15.82585 -15.57913 -15.25891 -14.79443 -14.77622 -14.28267 -13.92266 -13.71546 -13.47959 -13.30048 -13.05180 -12.70700 -12.64861 -12.58132 -12.29547 -12.25648 -12.09437 -11.97319 -11.84756 -11.74932 -11.12397 -11.07910 -10.92056 -10.39216 -9.93369 -8.93186 -7.87011 -5.15955 0.97352 1.40379 1.45339 1.56748 1.73455 1.99114 2.52935 3.20819 3.44785 3.68302 3.75278 3.89082 3.99399 4.23760 4.28211 4.37696 4.46999 4.59146 4.60102 4.69039 4.77904 4.83611 4.87116 4.95170 4.96175 5.11041 5.20773 5.22544 5.27694 5.38769 5.44208 5.52098 5.66710 5.83078 6.14325 6.23520 6.30415 7.18482 7.83264 7.94593 8.21516 9.13686 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.007589 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.416375 B = 3688.759002 C = 4416.674047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.116 4.116 3 C 0.181 3.819 4 N -0.593 5.593 5 C -0.261 4.261 6 H 0.059 0.941 7 C -0.032 4.032 8 N -0.896 5.896 9 Si 0.936 3.064 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.293 1.293 13 C 0.231 3.769 14 C 0.172 3.828 15 N -0.347 5.347 16 N -0.353 5.353 17 C 0.165 3.835 18 C -0.027 4.027 19 C -0.142 4.142 20 N -0.469 5.469 21 C 0.065 3.935 22 H 0.055 0.945 23 H 0.032 0.968 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.022 0.978 28 H 0.045 0.955 29 H 0.248 0.752 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.035 0.965 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 2.318 16.773 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.155 4.155 3 C 0.056 3.944 4 N -0.313 5.313 5 C -0.390 4.390 6 H 0.077 0.923 7 C -0.229 4.229 8 N -0.541 5.541 9 Si 0.766 3.234 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.220 1.220 13 C 0.100 3.900 14 C -0.101 4.101 15 N -0.186 5.186 16 N -0.192 5.192 17 C -0.104 4.104 18 C -0.067 4.067 19 C -0.201 4.201 20 N -0.160 5.160 21 C -0.076 4.076 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.200 2.914 15.903 16.705 hybrid contribution -0.523 -0.021 -0.971 1.103 sum -4.723 2.893 14.932 15.926 Atomic orbital electron populations 1.21497 0.95996 1.00604 1.00351 1.21839 0.95111 0.98376 1.00179 1.20699 0.81395 0.95702 0.96606 1.44225 1.02107 1.83190 1.01772 1.19289 0.92888 1.42646 0.84201 0.92303 1.25105 0.98129 1.00659 0.98975 1.70299 1.15992 1.39861 1.27979 0.85753 0.76885 0.79438 0.81365 1.21186 1.21592 1.21985 1.19250 0.96786 0.85773 0.88190 1.26852 0.91587 1.01720 0.89913 1.74100 1.23232 0.99684 1.21577 1.74041 1.19121 1.19726 1.06328 1.25592 0.94830 0.88212 1.01748 1.20174 1.00554 0.93811 0.92124 1.21714 0.97385 0.99235 1.01726 1.46278 1.27753 1.15140 1.26815 1.22444 0.86099 1.00049 0.99057 0.92583 0.94840 0.93008 0.91985 0.94486 0.95954 0.93631 0.94253 0.90804 0.89253 0.86653 0.88020 0.88246 0.94552 0.93179 0.89837 0.88106 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.91 71.98 0.71 -3.53 16 2 C -0.12 -4.64 5.66 30.60 0.17 -4.46 16 3 C 0.18 7.99 4.90 86.38 0.42 8.41 16 4 N -0.59 -28.47 2.52 -706.32 -1.78 -30.25 16 5 C -0.26 -14.51 9.65 84.04 0.81 -13.70 16 6 H 0.06 3.43 7.96 -2.91 -0.02 3.41 16 7 C -0.03 -1.79 4.83 84.86 0.41 -1.38 16 8 N -0.90 -49.21 8.74 21.65 0.19 -49.02 16 9 Si 0.94 46.62 29.63 68.60 2.03 48.65 16 10 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 13 C 0.23 9.22 6.09 85.63 0.52 9.75 16 14 C 0.17 6.93 7.61 137.98 1.05 7.98 16 15 N -0.35 -16.48 12.21 -50.15 -0.61 -17.09 16 16 N -0.35 -15.10 12.21 -50.15 -0.61 -15.71 16 17 C 0.17 5.29 7.28 137.98 1.01 6.30 16 18 C -0.03 -0.53 6.29 29.85 0.19 -0.34 16 19 C -0.14 -2.63 9.89 71.98 0.71 -1.92 16 20 N -0.47 -14.53 3.15 -527.24 -1.66 -16.19 16 21 C 0.06 1.21 10.29 127.77 1.31 2.53 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 3.04 6.37 -2.39 -0.02 3.02 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.02 0.86 7.11 -2.39 -0.02 0.85 16 28 H 0.05 2.38 5.99 -2.39 -0.01 2.37 16 29 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 30 H 0.07 3.09 8.00 -2.38 -0.02 3.07 16 31 H 0.09 2.88 6.94 -2.39 -0.02 2.87 16 32 H 0.12 1.35 7.33 -2.39 -0.02 1.33 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.53 7.74 -2.39 -0.02 1.52 16 38 H 0.10 1.73 6.96 -2.39 -0.02 1.71 16 39 H 0.12 1.30 7.36 -2.39 -0.02 1.28 16 Total: -1.00 -72.74 317.40 5.90 -66.84 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.02 Total: 3.15 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 7.32 Total: 9.63 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -4.47 Total: -128.27 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -72.74 5.90 -66.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195101387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.778 kcal (2) G-P(sol) polarization free energy of solvation -72.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds