Wall clock time and date at job start Sun Mar 29 2020 23:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34428 * 126.82196 * 2 1 4 4 N 1.30834 * 108.08033 * 180.02562 * 3 2 1 5 5 C 1.33241 * 109.82716 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.52704 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47125 * 90.02528 * 6 5 4 8 8 C 1.46896 * 111.00072 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47276 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46585 * 299.99905 * 9 8 7 11 11 C 1.52994 * 109.47162 * 59.99749 * 9 8 7 12 12 C 1.52991 * 109.46924 * 180.02562 * 9 8 7 13 13 C 1.50704 * 109.47059 * 180.02562 * 12 9 8 14 14 H 1.08007 * 119.99786 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00372 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00019 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 119.99848 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47721 * 90.00145 * 17 15 13 19 19 H 1.48503 * 109.47097 * 210.00010 * 17 15 13 20 20 H 1.48505 * 109.47286 * 329.99775 * 17 15 13 21 21 N 1.30718 * 108.94820 * 359.97438 * 5 4 3 22 22 H 1.09000 * 109.47090 * 90.00037 * 1 2 3 23 23 H 1.09001 * 109.46754 * 209.99949 * 1 2 3 24 24 H 1.08993 * 109.47230 * 329.99790 * 1 2 3 25 25 H 1.08001 * 125.96455 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.47167 * 210.02173 * 6 5 4 27 27 H 1.08996 * 109.47250 * 330.02845 * 6 5 4 28 28 H 1.00897 * 110.99538 * 303.95683 * 7 6 5 29 29 H 1.09004 * 109.47434 * 299.99834 * 8 7 6 30 30 H 1.09002 * 109.47128 * 59.99844 * 8 7 6 31 31 H 1.09007 * 109.47040 * 60.00567 * 10 9 8 32 32 H 1.09004 * 109.46849 * 179.97438 * 10 9 8 33 33 H 1.08992 * 109.47803 * 299.99988 * 10 9 8 34 34 H 1.09007 * 109.46918 * 59.99845 * 11 9 8 35 35 H 1.08997 * 109.47083 * 180.02562 * 11 9 8 36 36 H 1.08998 * 109.47351 * 300.00641 * 11 9 8 37 37 H 1.09004 * 109.47256 * 299.99445 * 12 9 8 38 38 H 1.08998 * 109.47758 * 60.00155 * 12 9 8 39 39 H 0.96998 * 119.99919 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2706 1.0761 0.0000 4 7 3.5096 0.6557 -0.0006 5 6 3.5348 -0.6764 -0.0015 6 6 4.7777 -1.5288 -0.0029 7 7 5.1821 -1.8072 1.3817 8 6 6.3928 -2.6382 1.4196 9 6 6.7818 -2.9068 2.8747 10 6 7.0527 -1.5783 3.5837 11 6 5.6388 -3.6382 3.5815 12 6 8.0431 -3.7718 2.9140 13 6 8.4259 -4.0370 4.3473 14 1 7.8293 -3.6289 5.1499 15 6 9.5375 -4.8004 4.6341 16 7 9.8718 -5.0314 5.8849 17 14 10.5688 -5.5068 3.2461 18 1 11.6345 -4.5399 2.8795 19 1 11.1883 -6.7817 3.6890 20 1 9.7035 -5.7607 2.0662 21 7 2.3067 -1.1242 -0.0010 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.9510 2.1077 -0.0004 26 1 4.5737 -2.4677 -0.5176 27 1 5.5804 -0.9997 -0.5164 28 1 5.3145 -0.9509 1.8988 29 1 6.1997 -3.5849 0.9148 30 1 7.2070 -2.1173 0.9156 31 1 6.1542 -0.9617 3.5556 32 1 7.3294 -1.7696 4.6205 33 1 7.8669 -1.0572 3.0802 34 1 5.4458 -4.5847 3.0763 35 1 5.9158 -3.8292 4.6182 36 1 4.7405 -3.0216 3.5533 37 1 7.8505 -4.7183 2.4088 38 1 8.8572 -3.2504 2.4107 39 1 10.6541 -5.5682 6.0867 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218954407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:05 Heat of formation + Delta-G solvation = 81.168705 kcal Electronic energy + Delta-G solvation = -18342.008744 eV Core-core repulsion = 15514.373836 eV Total energy + Delta-G solvation = -2827.634908 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.18824 -37.75945 -35.09833 -33.67944 -32.14285 -31.28780 -28.52201 -27.46752 -26.31001 -26.05474 -24.17094 -22.24702 -21.76247 -20.58347 -17.89758 -17.10232 -16.72821 -16.20510 -15.76967 -14.84933 -14.68703 -14.38905 -13.99622 -13.58235 -13.43313 -13.18570 -12.79032 -12.58922 -12.20268 -12.04708 -11.91133 -11.81832 -11.02158 -10.90544 -10.79920 -10.43684 -10.29158 -10.13770 -9.94879 -9.76704 -9.74970 -9.60585 -9.23419 -8.85412 -8.45064 -8.14725 -5.95408 -3.91302 1.46130 2.13046 2.74546 3.36145 3.43736 3.47738 3.95438 4.20788 4.52081 4.52812 4.73410 4.74293 4.94019 5.02819 5.37820 5.50080 5.54047 5.68590 5.76843 5.94143 6.09051 6.20028 6.27775 6.30584 6.48182 6.60274 6.66614 6.75184 6.86697 7.12908 7.18717 7.22910 7.31542 7.38947 7.51492 7.63794 7.90320 7.98055 8.64928 9.10822 9.67808 11.17806 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.048501 B = 0.003777 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.174872 B = 7410.848195 C = 7547.998460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.389 5.389 3 C 0.250 3.750 4 N -0.542 5.542 5 C 0.233 3.767 6 C 0.151 3.849 7 N -0.679 5.679 8 C 0.069 3.931 9 C -0.048 4.048 10 C -0.131 4.131 11 C -0.117 4.117 12 C -0.004 4.004 13 C -0.506 4.506 14 H 0.078 0.922 15 C 0.064 3.936 16 N -0.907 5.907 17 Si 0.876 3.124 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.266 1.266 21 N -0.299 5.299 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.217 0.783 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.345 0.655 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.015 0.985 38 H 0.009 0.991 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 11.974 -13.363 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.180 5.180 3 C -0.047 4.047 4 N -0.269 5.269 5 C -0.050 4.050 6 C 0.019 3.981 7 N -0.313 5.313 8 C -0.060 4.060 9 C -0.049 4.049 10 C -0.188 4.188 11 C -0.175 4.175 12 C -0.042 4.042 13 C -0.544 4.544 14 H 0.096 0.904 15 C -0.136 4.136 16 N -0.547 5.547 17 Si 0.704 3.296 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.191 1.191 21 N -0.127 5.127 22 H 0.096 0.904 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.234 0.766 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.027 0.973 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.851 10.796 -13.196 24.685 hybrid contribution 0.992 0.525 -0.926 1.455 sum -16.859 11.321 -14.122 24.735 Atomic orbital electron populations 1.21921 0.73863 1.05000 1.03662 1.50442 1.08111 1.04609 1.54855 1.25992 0.85917 0.95462 0.97370 1.70414 1.20593 1.11326 1.24600 1.24188 0.93771 0.89343 0.97725 1.20113 0.88937 0.96596 0.92416 1.60509 1.37041 1.23129 1.10577 1.22168 0.88564 0.96529 0.98730 1.20418 0.96973 0.96060 0.91426 1.21787 0.98780 0.95899 1.02362 1.21609 0.96394 0.98629 1.00844 1.19631 0.92055 0.94400 0.98122 1.21149 1.10733 1.31335 0.91161 0.90436 1.25017 0.97393 0.96091 0.95140 1.69912 1.26924 1.40146 1.17671 0.86841 0.80797 0.78641 0.83353 1.20517 1.21610 1.19068 1.78115 1.01648 1.07376 1.25611 0.90358 0.88938 0.88992 0.76627 0.88947 0.92600 0.83551 0.91252 0.95439 0.94636 0.91176 0.94011 0.94150 0.92160 0.93759 0.96633 0.97289 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.53 59.84 0.69 1.16 16 2 N -0.39 -3.90 4.04 -69.45 -0.28 -4.18 16 3 C 0.25 2.36 12.66 -90.65 -1.15 1.21 16 4 N -0.54 -7.20 11.19 -11.97 -0.13 -7.33 16 5 C 0.23 3.32 7.65 -156.85 -1.20 2.12 16 6 C 0.15 2.08 6.31 -4.97 -0.03 2.05 16 7 N -0.68 -10.50 5.70 -115.05 -0.66 -11.15 16 8 C 0.07 1.16 4.65 -3.82 -0.02 1.14 16 9 C -0.05 -0.96 0.60 -154.51 -0.09 -1.05 16 10 C -0.13 -2.50 7.89 37.16 0.29 -2.21 16 11 C -0.12 -2.35 8.06 37.15 0.30 -2.05 16 12 C 0.00 -0.10 3.11 -27.89 -0.09 -0.19 16 13 C -0.51 -14.16 8.20 -34.44 -0.28 -14.44 16 14 H 0.08 2.32 5.92 -52.48 -0.31 2.01 16 15 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 16 N -0.91 -28.13 13.96 55.43 0.77 -27.35 16 17 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 21 N -0.30 -4.22 12.70 32.42 0.41 -3.81 16 22 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.22 0.90 8.06 -52.49 -0.42 0.48 16 26 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.34 5.40 6.77 -39.29 -0.27 5.13 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.03 0.60 6.57 -51.92 -0.34 0.25 16 32 H 0.07 1.50 6.62 -51.93 -0.34 1.16 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 36 H 0.04 0.82 7.60 -51.93 -0.39 0.43 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 38 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 316.46 15.07 4.77 4.77 Total: -1.00 -34.28 316.46 -7.62 -41.90 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.16 Total: 0.31 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.67 Total: -10.51 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.12 Total: -53.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.28 -7.62 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218954407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.071 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds