Wall clock time and date at job start Sun Mar 29 2020 23:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46836 * 111.00167 * 2 1 4 4 C 1.53047 * 109.50369 * 174.09884 * 3 2 1 5 5 C 1.52383 * 109.35262 * 59.04419 * 4 3 2 6 6 C 1.53113 * 109.57892 * 302.63021 * 5 4 3 7 7 H 1.08998 * 109.57314 * 297.14134 * 6 5 4 8 8 C 1.53219 * 109.55528 * 176.90061 * 6 5 4 9 9 N 1.46924 * 108.76893 * 185.53945 * 8 6 5 10 10 C 1.34769 * 120.63760 * 233.65471 * 9 8 6 11 11 O 1.21684 * 120.00007 * 354.61908 * 10 9 8 12 12 C 1.46371 * 120.00105 * 174.62263 * 10 9 8 13 13 H 1.08003 * 120.00218 * 335.19436 * 12 10 9 14 14 C 1.40050 * 120.00318 * 155.19545 * 12 10 9 15 15 N 1.30667 * 120.00291 * 184.37458 * 14 12 10 16 16 Si 1.86807 * 119.99580 * 4.37347 * 14 12 10 17 17 H 1.48497 * 109.47051 * 84.44257 * 16 14 12 18 18 H 1.48498 * 109.46683 * 204.44262 * 16 14 12 19 19 H 1.48497 * 109.47256 * 324.43779 * 16 14 12 20 20 C 1.46932 * 118.72786 * 53.63196 * 9 8 6 21 21 C 1.53181 * 108.78118 * 306.42714 * 20 9 8 22 22 C 1.46843 * 110.99843 * 235.72920 * 2 1 3 23 23 H 1.08999 * 109.46922 * 65.75610 * 22 2 1 24 24 H 1.09002 * 109.46944 * 184.27068 * 1 2 3 25 25 H 1.09003 * 109.46857 * 304.26750 * 1 2 3 26 26 H 1.08995 * 109.47156 * 64.26651 * 1 2 3 27 27 H 1.09001 * 109.46800 * 294.11003 * 3 2 1 28 28 H 1.08998 * 109.46300 * 54.09126 * 3 2 1 29 29 H 1.08998 * 109.50369 * 179.16063 * 4 3 2 30 30 H 1.08992 * 109.50596 * 299.29944 * 4 3 2 31 31 H 1.09005 * 109.33372 * 182.59697 * 5 4 3 32 32 H 1.09000 * 109.31323 * 62.66017 * 5 4 3 33 33 H 1.08996 * 109.59326 * 305.69698 * 8 6 5 34 34 H 1.09001 * 109.58572 * 66.12474 * 8 6 5 35 35 H 0.97002 * 119.99754 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.58206 * 186.63508 * 20 9 8 37 37 H 1.08997 * 109.58637 * 66.21919 * 20 9 8 38 38 H 1.08993 * 109.49663 * 294.70003 * 21 20 9 39 39 H 1.08997 * 109.52070 * 174.62036 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5180 1.3335 0.1483 5 6 4.1182 0.5370 -1.0038 6 6 3.5187 -0.8718 -1.0208 7 1 3.7837 -1.3925 -0.1006 8 6 4.0642 -1.6468 -2.2246 9 7 3.3799 -2.9447 -2.3009 10 6 4.0859 -4.0915 -2.3520 11 8 5.2995 -4.0556 -2.4340 12 6 3.3930 -5.3801 -2.3089 13 1 2.4182 -5.4540 -1.8498 14 6 3.9941 -6.5173 -2.8628 15 7 3.3411 -7.6484 -2.9012 16 14 5.7295 -6.4169 -3.5470 17 1 6.7075 -6.5973 -2.4442 18 1 5.9243 -7.4842 -4.5609 19 1 5.9362 -5.0895 -4.1797 20 6 1.9108 -2.9684 -2.3198 21 6 1.3893 -2.1776 -1.1161 22 6 1.9952 -0.7720 -1.1329 23 1 1.7314 -0.2738 -2.0658 24 1 -0.3633 -1.0248 0.0765 25 1 -0.3633 0.5787 0.8493 26 1 -0.3633 0.4462 -0.9257 27 1 1.7335 1.8604 -0.9380 28 1 1.5627 1.9259 0.8324 29 1 3.9101 2.3504 0.1334 30 1 3.7802 0.8554 1.0920 31 1 5.1984 0.4714 -0.8730 32 1 3.8943 1.0395 -1.9447 33 1 3.8843 -1.0785 -3.1372 34 1 5.1345 -1.8110 -2.0990 35 1 3.7574 -8.4359 -3.2852 36 1 1.5613 -3.9991 -2.2592 37 1 1.5499 -2.5117 -3.2413 38 1 1.6750 -2.6860 -0.1953 39 1 0.3030 -2.1062 -1.1702 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227334978.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:11 Heat of formation + Delta-G solvation = -44.570295 kcal Electronic energy + Delta-G solvation = -19706.539464 eV Core-core repulsion = 16841.159353 eV Total energy + Delta-G solvation = -2865.380112 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.96071 -37.81681 -35.18375 -34.03727 -32.77433 -31.18199 -29.88500 -26.94270 -26.57346 -24.54861 -23.41090 -21.52098 -20.91951 -19.68552 -18.86790 -16.73026 -16.07574 -15.42552 -15.33089 -14.84083 -14.59327 -14.52876 -13.81232 -13.73572 -13.46672 -12.78404 -12.67856 -12.39280 -12.34623 -12.06316 -11.76522 -11.72534 -11.40913 -11.17709 -11.02210 -10.85269 -10.69073 -10.53802 -10.30186 -10.06048 -9.83590 -9.37132 -8.97015 -8.28337 -7.89667 -7.47108 -6.56900 -4.76849 3.47162 3.50097 3.77583 3.89206 4.19402 4.27934 4.56888 4.78238 4.87424 4.95013 5.05660 5.32759 5.34800 5.39181 5.41864 5.47684 5.54299 5.64756 5.71326 5.77928 5.84993 5.90204 5.92938 6.00610 6.06669 6.11513 6.22609 6.27365 6.41586 6.51066 6.55050 6.75022 7.08881 7.14502 7.18905 7.68490 7.92182 8.36264 8.76138 9.16508 10.04424 10.44756 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036717 B = 0.006226 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.398507 B = 4496.097892 C = 5096.607004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.092 4.092 7 H 0.081 0.919 8 C 0.124 3.876 9 N -0.630 5.630 10 C 0.558 3.442 11 O -0.612 6.612 12 C -0.534 4.534 13 H 0.091 0.909 14 C 0.101 3.899 15 N -0.835 5.835 16 Si 0.953 3.047 17 H -0.278 1.278 18 H -0.320 1.320 19 H -0.253 1.253 20 C 0.122 3.878 21 C -0.130 4.130 22 C 0.096 3.904 23 H 0.037 0.963 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.021 0.979 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.281 0.719 36 H 0.103 0.897 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 16.017 3.690 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.112 4.112 7 H 0.099 0.901 8 C 0.000 4.000 9 N -0.364 5.364 10 C 0.366 3.634 11 O -0.503 6.503 12 C -0.570 4.570 13 H 0.109 0.891 14 C -0.116 4.116 15 N -0.466 5.466 16 Si 0.785 3.215 17 H -0.204 1.204 18 H -0.252 1.252 19 H -0.178 1.178 20 C -0.003 4.003 21 C -0.169 4.169 22 C -0.012 4.012 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.684 15.618 4.056 16.802 hybrid contribution 0.172 0.435 -0.924 1.036 sum -4.512 16.053 3.132 16.967 Atomic orbital electron populations 1.22402 0.87704 1.02579 0.99871 1.61904 1.07286 1.13082 1.44213 1.22062 0.95785 0.89326 0.99895 1.21439 0.94372 0.99783 0.99708 1.21448 1.00265 0.95341 0.98249 1.21607 0.93647 0.95491 1.00464 0.90096 1.21277 0.98755 0.84748 0.95226 1.47784 1.05391 1.05086 1.78129 1.18403 0.85989 0.83938 0.75071 1.90294 1.15336 1.86105 1.58572 1.20711 1.06359 0.89817 1.40141 0.89146 1.25695 0.99910 0.93777 0.92226 1.69538 1.38516 1.01149 1.37365 0.85534 0.81246 0.76535 0.78224 1.20440 1.25159 1.17782 1.21485 0.81322 1.02116 0.95339 1.22122 0.99417 0.94624 1.00744 1.21615 0.94921 0.93993 0.90676 0.94530 0.90672 0.91837 0.96011 0.95321 0.91151 0.91755 0.91133 0.91537 0.92412 0.93639 0.89496 0.90933 0.87931 0.93673 0.90699 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.05 60.06 0.54 0.79 16 2 N -0.54 -6.95 4.74 -234.86 -1.11 -8.06 16 3 C 0.06 0.63 5.47 -3.83 -0.02 0.61 16 4 C -0.12 -1.26 6.07 -27.02 -0.16 -1.42 16 5 C -0.11 -1.44 5.24 -26.99 -0.14 -1.58 16 6 C -0.09 -1.43 2.32 -90.40 -0.21 -1.64 16 7 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 8 C 0.12 2.31 5.72 -3.70 -0.02 2.29 16 9 N -0.63 -13.73 2.97 -174.42 -0.52 -14.24 16 10 C 0.56 14.93 7.22 -12.99 -0.09 14.84 16 11 O -0.61 -17.82 11.70 5.20 0.06 -17.76 16 12 C -0.53 -15.05 9.06 -35.63 -0.32 -15.38 16 13 H 0.09 2.54 6.47 -52.48 -0.34 2.20 16 14 C 0.10 2.88 5.52 -17.37 -0.10 2.79 16 15 N -0.84 -23.84 13.92 55.55 0.77 -23.07 16 16 Si 0.95 25.30 26.20 -169.99 -4.45 20.84 16 17 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 18 H -0.32 -8.09 7.11 56.52 0.40 -7.69 16 19 H -0.25 -7.06 6.21 56.52 0.35 -6.71 16 20 C 0.12 2.23 6.35 -3.71 -0.02 2.21 16 21 C -0.13 -2.00 4.98 -26.60 -0.13 -2.14 16 22 C 0.10 1.38 1.68 -67.66 -0.11 1.27 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.81 6.18 -51.93 -0.32 0.49 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.78 7.02 -51.93 -0.36 1.41 16 35 H 0.28 7.40 8.29 -40.82 -0.34 7.06 16 36 H 0.10 2.06 5.52 -51.93 -0.29 1.77 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 0.88 6.24 -51.93 -0.32 0.56 16 LS Contribution 294.09 15.07 4.43 4.43 Total: -1.00 -31.31 294.09 -7.93 -39.24 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -6.31 Total: -4.01 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -0.80 Total: 2.63 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.86 Total: -45.37 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.06 Total: -17.76 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -4.45 Total: 20.84 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.31 -7.93 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227334978.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.332 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds