Wall clock time and date at job start Sun Mar 29 2020 23:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21282 * 120.00166 * 2 1 4 4 N 1.34772 * 120.00367 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00667 * 179.97438 * 4 2 1 6 6 H 1.09003 * 110.27006 * 327.09336 * 5 4 2 7 7 C 1.54591 * 110.30513 * 89.28318 * 5 4 2 8 8 C 1.54947 * 102.92042 * 140.87892 * 7 5 4 9 9 N 1.48535 * 103.22291 * 322.58593 * 8 7 5 10 10 C 1.46901 * 110.99667 * 159.71905 * 9 8 7 11 11 C 1.52998 * 109.46998 * 58.21223 * 10 9 8 12 12 C 1.50695 * 115.55418 * 54.52465 * 11 10 9 13 13 H 1.08004 * 119.99733 * 272.65002 * 12 11 10 14 14 C 1.37878 * 120.00364 * 92.64208 * 12 11 10 15 15 N 1.31510 * 120.00245 * 173.03223 * 14 12 11 16 16 Si 1.86799 * 119.99811 * 353.31385 * 14 12 11 17 17 H 1.48498 * 109.47329 * 94.25915 * 16 14 12 18 18 H 1.48501 * 109.47122 * 214.26118 * 16 14 12 19 19 H 1.48502 * 109.47127 * 334.25899 * 16 14 12 20 20 C 1.53002 * 117.49486 * 200.19558 * 11 10 9 21 21 C 1.53000 * 117.49556 * 268.85283 * 11 10 9 22 22 C 1.47902 * 105.81976 * 39.20799 * 9 8 7 23 23 H 1.08998 * 109.46818 * 239.99933 * 1 2 3 24 24 H 1.09002 * 109.46940 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46637 * 120.00256 * 1 2 3 26 26 H 0.97005 * 119.99975 * 0.02562 * 4 2 1 27 27 H 1.08998 * 110.72640 * 259.23207 * 7 5 4 28 28 H 1.08994 * 110.72861 * 22.34586 * 7 5 4 29 29 H 1.08991 * 110.67042 * 204.15424 * 8 7 5 30 30 H 1.08994 * 110.66633 * 81.01770 * 8 7 5 31 31 H 1.09000 * 109.47156 * 298.21039 * 10 9 8 32 32 H 1.09003 * 109.46762 * 178.20982 * 10 9 8 33 33 H 0.96999 * 120.00123 * 180.02562 * 15 14 12 34 34 H 1.09006 * 117.49819 * 215.00120 * 20 11 10 35 35 H 1.08997 * 117.50391 * 0.02562 * 20 11 10 36 36 H 1.08998 * 117.50172 * 359.97435 * 21 11 10 37 37 H 1.09000 * 117.49865 * 144.98029 * 21 11 10 38 38 H 1.08998 * 109.91690 * 94.02426 * 22 9 8 39 39 H 1.09003 * 109.91612 * 215.11797 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0234 -0.3091 -0.5563 7 6 4.1830 -1.1481 1.4495 8 6 5.4020 -2.1021 1.3799 9 7 4.9474 -3.1670 0.4495 10 6 6.0910 -3.8939 -0.1176 11 6 6.9206 -4.5026 1.0146 12 6 6.1624 -5.3805 1.9765 13 1 5.6709 -4.9440 2.8334 14 6 6.0961 -6.7410 1.7626 15 7 5.5540 -7.5237 2.6699 16 14 6.7834 -7.4735 0.1877 17 1 8.1808 -7.9199 0.4180 18 1 5.9536 -8.6351 -0.2213 19 1 6.7620 -6.4476 -0.8858 20 6 8.3696 -4.8827 0.7031 21 6 8.0690 -3.6636 1.5788 22 6 4.1802 -2.4764 -0.6098 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3632 -0.5139 -0.8900 26 1 1.6959 -2.0072 0.0005 27 1 4.4956 -0.1428 1.7318 28 1 3.4328 -1.5265 2.1438 29 1 5.6214 -2.5182 2.3630 30 1 6.2726 -1.5849 0.9767 31 1 6.7105 -3.2052 -0.6923 32 1 5.7291 -4.6882 -0.7705 33 1 5.5076 -8.4808 2.5196 34 1 8.7744 -5.7678 1.1940 35 1 8.7320 -4.6986 -0.3083 36 1 8.2337 -2.6782 1.1431 37 1 8.2758 -3.7464 2.6458 38 1 4.8316 -2.2538 -1.4549 39 1 3.3503 -3.1033 -0.9359 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228261155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:08 Heat of formation + Delta-G solvation = -2.513346 kcal Electronic energy + Delta-G solvation = -19099.238616 eV Core-core repulsion = 16235.682230 eV Total energy + Delta-G solvation = -2863.556385 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.91713 -38.47603 -36.53535 -34.00303 -31.97211 -31.02125 -29.59930 -27.82090 -25.92780 -24.58236 -21.82601 -21.00307 -20.76427 -20.35604 -18.89698 -17.01226 -16.47197 -16.13894 -15.28720 -14.97771 -14.76226 -14.50629 -13.75739 -13.66567 -13.46728 -12.93296 -12.71705 -12.58575 -12.37801 -11.96273 -11.92331 -11.56362 -11.50452 -11.15788 -11.01073 -10.60591 -10.45414 -10.34925 -9.98336 -9.88932 -9.54115 -9.03472 -8.97185 -8.50113 -8.41984 -7.72809 -6.01010 -3.99051 2.60350 3.22399 3.32768 3.42351 3.45770 4.42293 4.49809 4.67722 4.82793 4.99881 5.03098 5.13395 5.22455 5.27792 5.31673 5.56930 5.59219 5.67637 5.80708 5.87606 5.93980 6.01256 6.11884 6.16863 6.18154 6.35326 6.39516 6.47073 6.59729 6.63373 6.75593 7.05791 7.16117 7.45802 7.51652 7.69842 7.86501 8.20377 8.61704 9.04656 9.63355 11.11673 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030940 B = 0.005454 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.765735 B = 5132.511680 C = 5459.925424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.509 3.491 3 O -0.554 6.554 4 N -0.719 5.719 5 C 0.135 3.865 6 H 0.090 0.910 7 C -0.133 4.133 8 C 0.047 3.953 9 N -0.485 5.485 10 C 0.085 3.915 11 C 0.009 3.991 12 C -0.459 4.459 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.902 5.902 16 Si 0.879 3.121 17 H -0.283 1.283 18 H -0.297 1.297 19 H -0.262 1.262 20 C -0.203 4.203 21 C -0.184 4.184 22 C 0.026 3.974 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.404 0.596 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.010 0.990 32 H 0.071 0.929 33 H 0.262 0.738 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 10.813 -6.709 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.296 3.704 3 O -0.432 6.432 4 N -0.371 5.371 5 C 0.030 3.970 6 H 0.108 0.892 7 C -0.173 4.173 8 C -0.081 4.081 9 N -0.208 5.208 10 C -0.043 4.043 11 C 0.007 3.993 12 C -0.496 4.496 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.541 5.541 16 Si 0.708 3.292 17 H -0.210 1.210 18 H -0.224 1.224 19 H -0.187 1.187 20 C -0.241 4.241 21 C -0.222 4.222 22 C -0.103 4.103 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.239 0.761 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.997 10.975 -6.410 14.054 hybrid contribution 0.712 -0.498 -1.343 1.600 sum -5.285 10.477 -7.753 14.065 Atomic orbital electron populations 1.21917 0.91906 1.05278 1.04308 1.20812 0.90570 0.83612 0.75430 1.90705 1.70947 1.31534 1.50011 1.46207 1.07178 1.08807 1.74875 1.21852 0.79546 0.98348 0.97301 0.89236 1.22934 0.98686 0.99571 0.96060 1.23153 0.94609 0.90991 0.99347 1.64721 1.21991 1.21504 1.12600 1.22056 0.90400 0.95847 0.95966 1.19397 0.85961 0.98166 0.95732 1.20088 1.31409 0.90011 1.08107 0.90363 1.24925 0.94906 0.96954 0.95862 1.69902 1.45978 1.04372 1.33816 0.86875 0.78447 0.78535 0.85307 1.20954 1.22385 1.18654 1.22964 1.02799 0.99489 0.98808 1.22907 1.07355 0.93131 0.98786 1.23159 0.99038 0.93476 0.94619 0.89307 0.89200 0.89502 0.76063 0.91238 0.90361 0.88795 0.94490 0.97231 0.91117 0.92862 0.89366 0.91236 0.91416 0.89538 0.93634 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.32 36.00 0.37 -0.97 16 2 C 0.51 6.22 7.94 -10.99 -0.09 6.13 16 3 O -0.55 -9.18 16.74 5.56 0.09 -9.09 16 4 N -0.72 -8.34 5.06 -52.50 -0.27 -8.61 16 5 C 0.13 1.84 3.34 -66.58 -0.22 1.62 16 6 H 0.09 1.29 7.56 -51.93 -0.39 0.90 16 7 C -0.13 -1.96 6.78 -24.87 -0.17 -2.13 16 8 C 0.05 0.79 5.06 -1.89 -0.01 0.78 16 9 N -0.48 -8.89 5.04 -230.45 -1.16 -10.05 16 10 C 0.09 1.71 4.57 -3.82 -0.02 1.69 16 11 C 0.01 0.19 0.31 -155.66 -0.05 0.14 16 12 C -0.46 -12.34 9.11 -34.44 -0.31 -12.65 16 13 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 14 C 0.07 2.09 5.46 -17.82 -0.10 2.00 16 15 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 16 Si 0.88 21.51 24.85 -169.99 -4.22 17.28 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 19 H -0.26 -6.04 5.67 56.52 0.32 -5.72 16 20 C -0.20 -4.27 7.54 -26.69 -0.20 -4.47 16 21 C -0.18 -3.66 8.80 -26.69 -0.23 -3.90 16 22 C 0.03 0.38 6.46 -2.76 -0.02 0.36 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.40 3.86 8.36 -40.82 -0.34 3.52 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 29 H 0.09 1.78 7.80 -51.93 -0.40 1.37 16 30 H 0.04 0.60 7.42 -51.93 -0.39 0.21 16 31 H 0.01 0.18 7.92 -51.93 -0.41 -0.23 16 32 H 0.07 1.50 6.69 -51.93 -0.35 1.15 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.09 1.97 7.00 -51.93 -0.36 1.61 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.20 7.64 -51.93 -0.40 0.80 16 37 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 38 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 39 H 0.08 1.10 7.66 -51.93 -0.40 0.70 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -31.79 310.18 -7.59 -39.37 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.43 Total: 4.20 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.05 Total: -11.39 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.65 Total: -45.05 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.22 Total: 17.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.79 -7.59 -39.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228261155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.861 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds