Wall clock time and date at job start Sun Mar 29 2020 23:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21282 * 120.00166 * 2 1 4 4 N 1.34772 * 120.00367 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00667 * 179.97438 * 4 2 1 6 6 H 1.09003 * 110.27006 * 327.09336 * 5 4 2 7 7 C 1.54591 * 110.30513 * 89.28318 * 5 4 2 8 8 C 1.54947 * 102.92042 * 140.87892 * 7 5 4 9 9 N 1.48535 * 103.22291 * 322.58593 * 8 7 5 10 10 C 1.46901 * 110.99667 * 159.71905 * 9 8 7 11 11 C 1.52998 * 109.46998 * 58.21223 * 10 9 8 12 12 C 1.50695 * 115.55418 * 54.52465 * 11 10 9 13 13 H 1.08004 * 119.99733 * 272.65002 * 12 11 10 14 14 C 1.37878 * 120.00364 * 92.64208 * 12 11 10 15 15 N 1.31510 * 120.00245 * 173.03223 * 14 12 11 16 16 Si 1.86799 * 119.99811 * 353.31385 * 14 12 11 17 17 H 1.48498 * 109.47329 * 94.25915 * 16 14 12 18 18 H 1.48501 * 109.47122 * 214.26118 * 16 14 12 19 19 H 1.48502 * 109.47127 * 334.25899 * 16 14 12 20 20 C 1.53002 * 117.49486 * 200.19558 * 11 10 9 21 21 C 1.53000 * 117.49556 * 268.85283 * 11 10 9 22 22 C 1.47902 * 105.81976 * 39.20799 * 9 8 7 23 23 H 1.08998 * 109.46818 * 239.99933 * 1 2 3 24 24 H 1.09002 * 109.46940 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46637 * 120.00256 * 1 2 3 26 26 H 0.97005 * 119.99975 * 0.02562 * 4 2 1 27 27 H 1.08998 * 110.72640 * 259.23207 * 7 5 4 28 28 H 1.08994 * 110.72861 * 22.34586 * 7 5 4 29 29 H 1.08991 * 110.67042 * 204.15424 * 8 7 5 30 30 H 1.08994 * 110.66633 * 81.01770 * 8 7 5 31 31 H 1.09000 * 109.47156 * 298.21039 * 10 9 8 32 32 H 1.09003 * 109.46762 * 178.20982 * 10 9 8 33 33 H 0.96999 * 120.00123 * 180.02562 * 15 14 12 34 34 H 1.09006 * 117.49819 * 215.00120 * 20 11 10 35 35 H 1.08997 * 117.50391 * 0.02562 * 20 11 10 36 36 H 1.08998 * 117.50172 * 359.97435 * 21 11 10 37 37 H 1.09000 * 117.49865 * 144.98029 * 21 11 10 38 38 H 1.08998 * 109.91690 * 94.02426 * 22 9 8 39 39 H 1.09003 * 109.91612 * 215.11797 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0234 -0.3091 -0.5563 7 6 4.1830 -1.1481 1.4495 8 6 5.4020 -2.1021 1.3799 9 7 4.9474 -3.1670 0.4495 10 6 6.0910 -3.8939 -0.1176 11 6 6.9206 -4.5026 1.0146 12 6 6.1624 -5.3805 1.9765 13 1 5.6709 -4.9440 2.8334 14 6 6.0961 -6.7410 1.7626 15 7 5.5540 -7.5237 2.6699 16 14 6.7834 -7.4735 0.1877 17 1 8.1808 -7.9199 0.4180 18 1 5.9536 -8.6351 -0.2213 19 1 6.7620 -6.4476 -0.8858 20 6 8.3696 -4.8827 0.7031 21 6 8.0690 -3.6636 1.5788 22 6 4.1802 -2.4764 -0.6098 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3632 -0.5139 -0.8900 26 1 1.6959 -2.0072 0.0005 27 1 4.4956 -0.1428 1.7318 28 1 3.4328 -1.5265 2.1438 29 1 5.6214 -2.5182 2.3630 30 1 6.2726 -1.5849 0.9767 31 1 6.7105 -3.2052 -0.6923 32 1 5.7291 -4.6882 -0.7705 33 1 5.5076 -8.4808 2.5196 34 1 8.7744 -5.7678 1.1940 35 1 8.7320 -4.6986 -0.3083 36 1 8.2337 -2.6782 1.1431 37 1 8.2758 -3.7464 2.6458 38 1 4.8316 -2.2538 -1.4549 39 1 3.3503 -3.1033 -0.9359 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228261155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:08 Heat of formation + Delta-G solvation = -26.430304 kcal Electronic energy + Delta-G solvation = -19100.275733 eV Core-core repulsion = 16235.682230 eV Total energy + Delta-G solvation = -2864.593503 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02287 -39.80772 -38.05646 -35.17506 -34.08849 -32.17084 -30.59094 -28.97417 -27.78667 -26.18627 -23.40467 -22.26038 -21.97147 -21.43870 -20.71558 -18.31628 -17.88488 -17.40297 -16.81179 -16.34565 -16.11954 -15.79882 -15.35749 -15.04572 -14.69083 -14.59237 -14.16114 -13.67622 -13.40092 -13.17868 -13.11094 -13.07580 -12.91902 -12.70074 -12.44815 -12.10608 -12.05812 -11.84883 -11.77036 -11.42808 -10.92359 -10.79945 -10.54093 -10.21349 -10.07422 -9.09264 -8.17291 -6.18350 1.39332 1.42565 1.54209 1.66703 2.29947 2.45274 3.01054 3.16652 3.40111 3.60662 3.80795 3.98839 4.09787 4.23254 4.33986 4.35767 4.44581 4.48708 4.56050 4.58527 4.68928 4.71890 4.81030 4.85104 4.86786 4.93124 5.07548 5.10654 5.16069 5.22839 5.40286 5.52460 5.55915 5.79921 6.14709 6.27221 6.49081 6.61599 6.87119 7.28420 7.47214 8.99366 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030940 B = 0.005454 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.765735 B = 5132.511680 C = 5459.925424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.504 3.496 3 O -0.602 6.602 4 N -0.712 5.712 5 C 0.143 3.857 6 H 0.086 0.914 7 C -0.126 4.126 8 C 0.052 3.948 9 N -0.512 5.512 10 C 0.093 3.907 11 C -0.015 4.015 12 C -0.447 4.447 13 H 0.031 0.969 14 C 0.015 3.985 15 N -0.956 5.956 16 Si 0.938 3.062 17 H -0.278 1.278 18 H -0.303 1.303 19 H -0.233 1.233 20 C -0.200 4.200 21 C -0.166 4.166 22 C 0.031 3.969 23 H 0.107 0.893 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.416 0.584 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 11.918 -9.161 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.294 3.706 3 O -0.483 6.483 4 N -0.364 5.364 5 C 0.037 3.963 6 H 0.104 0.896 7 C -0.165 4.165 8 C -0.076 4.076 9 N -0.236 5.236 10 C -0.035 4.035 11 C -0.016 4.016 12 C -0.485 4.485 13 H 0.049 0.951 14 C -0.180 4.180 15 N -0.598 5.598 16 Si 0.764 3.236 17 H -0.204 1.204 18 H -0.231 1.231 19 H -0.156 1.156 20 C -0.237 4.237 21 C -0.203 4.203 22 C -0.097 4.097 23 H 0.125 0.875 24 H 0.108 0.892 25 H 0.130 0.870 26 H 0.253 0.747 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.969 12.086 -8.874 16.138 hybrid contribution 0.670 -0.783 -0.459 1.128 sum -5.299 11.303 -9.333 15.586 Atomic orbital electron populations 1.21927 0.88114 1.06042 1.06382 1.21627 0.92341 0.82712 0.73946 1.90686 1.72248 1.33136 1.52271 1.46163 1.06408 1.09508 1.74330 1.21642 0.80841 0.97730 0.96103 0.89594 1.22842 0.97693 0.99155 0.96842 1.23015 0.95930 0.90924 0.97693 1.64623 1.21971 1.22837 1.14206 1.21862 0.90780 0.96167 0.94737 1.19325 0.86603 0.99208 0.96502 1.20194 1.30376 0.90556 1.07421 0.95124 1.25731 0.95699 0.97540 0.99058 1.70062 1.48806 1.04601 1.36304 0.85916 0.77566 0.78012 0.82059 1.20439 1.23103 1.15622 1.23010 1.01044 0.99261 1.00419 1.22888 1.04815 0.94325 0.98291 1.23167 0.99088 0.93572 0.93915 0.87470 0.89162 0.86955 0.74700 0.90702 0.91241 0.91856 0.93356 0.94683 0.92194 0.93084 0.91147 0.88178 0.88269 0.90849 0.92309 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.32 71.24 0.74 -1.34 16 2 C 0.50 11.41 7.94 87.66 0.70 12.10 16 3 O -0.60 -19.38 16.74 -3.03 -0.05 -19.44 16 4 N -0.71 -15.10 5.06 -438.39 -2.22 -17.31 16 5 C 0.14 3.64 3.34 45.87 0.15 3.80 16 6 H 0.09 2.32 7.56 -2.39 -0.02 2.30 16 7 C -0.13 -3.59 6.78 31.80 0.22 -3.38 16 8 C 0.05 1.72 5.06 86.65 0.44 2.16 16 9 N -0.51 -18.04 5.04 -883.02 -4.45 -22.49 16 10 C 0.09 3.47 4.57 86.30 0.39 3.87 16 11 C -0.02 -0.66 0.31 -52.93 -0.02 -0.68 16 12 C -0.45 -24.62 9.11 25.60 0.23 -24.39 16 13 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 14 C 0.02 0.88 5.46 84.66 0.46 1.34 16 15 N -0.96 -59.73 13.96 21.45 0.30 -59.43 16 16 Si 0.94 44.08 24.85 68.60 1.70 45.78 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 19 H -0.23 -9.79 5.67 99.48 0.56 -9.23 16 20 C -0.20 -7.85 7.54 30.62 0.23 -7.62 16 21 C -0.17 -6.26 8.80 30.62 0.27 -5.99 16 22 C 0.03 0.83 6.46 86.44 0.56 1.39 16 23 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.09 1.17 8.12 -2.39 -0.02 1.15 16 25 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.42 6.95 8.36 -92.70 -0.77 6.17 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.07 2.08 8.06 -2.39 -0.02 2.06 16 29 H 0.06 2.45 7.80 -2.39 -0.02 2.43 16 30 H 0.05 1.46 7.42 -2.39 -0.02 1.45 16 31 H 0.04 1.14 7.92 -2.39 -0.02 1.12 16 32 H 0.06 2.36 6.69 -2.39 -0.02 2.34 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.07 3.02 7.00 -2.38 -0.02 3.01 16 35 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.10 3.13 7.64 -2.39 -0.02 3.11 16 37 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.06 1.45 7.66 -2.39 -0.02 1.43 16 39 H 0.09 2.22 7.66 -2.39 -0.02 2.21 16 Total: -1.00 -71.06 310.18 -0.23 -71.28 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.11 Total: 20.34 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 4.37 Total: -18.74 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -6.37 Total: -99.24 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.70 Total: 45.78 kcal Total: -71.06 -0.23 -71.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228261155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.855 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds