Wall clock time and date at job start Sun Mar 29 2020 23:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00314 * 2 1 4 4 H 1.09002 * 109.53445 * 29.90158 * 3 2 1 5 5 C 1.53117 * 109.50166 * 269.80688 * 3 2 1 6 6 C 1.53118 * 109.15983 * 182.40422 * 5 3 2 7 7 C 1.53037 * 109.28022 * 57.65227 * 6 5 3 8 8 N 1.46850 * 109.52147 * 300.82157 * 7 6 5 9 9 C 1.46904 * 111.00061 * 185.83873 * 8 7 6 10 10 C 1.53000 * 109.46910 * 52.11601 * 9 8 7 11 11 H 1.09000 * 109.47086 * 301.93807 * 10 9 8 12 12 C 1.47199 * 109.47169 * 61.93990 * 10 9 8 13 13 N 6.86865 * 114.05209 * 21.88987 * 2 1 3 14 14 C 1.53000 * 109.47016 * 181.94004 * 10 9 8 15 15 C 1.50695 * 109.47352 * 175.00333 * 14 10 9 16 16 H 1.08001 * 119.99905 * 359.97438 * 15 14 10 17 17 C 1.37880 * 119.99960 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99498 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00315 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47092 * 90.00166 * 19 17 15 21 21 H 1.48495 * 109.47135 * 210.00318 * 19 17 15 22 22 H 1.48503 * 109.47232 * 330.00615 * 19 17 15 23 23 C 1.46849 * 111.19756 * 61.74027 * 8 7 6 24 24 H 1.08992 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46616 * 299.99785 * 1 2 3 26 26 H 1.08999 * 109.46936 * 59.99872 * 1 2 3 27 27 H 1.09000 * 109.52565 * 62.50111 * 5 3 2 28 28 H 1.08995 * 109.52435 * 302.30477 * 5 3 2 29 29 H 1.09004 * 109.50254 * 297.71229 * 6 5 3 30 30 H 1.09002 * 109.53600 * 177.61566 * 6 5 3 31 31 H 1.08997 * 109.46704 * 180.80722 * 7 6 5 32 32 H 1.09000 * 109.45632 * 60.83030 * 7 6 5 33 33 H 1.08995 * 109.47170 * 172.11803 * 9 8 7 34 34 H 1.09000 * 109.46883 * 292.12052 * 9 8 7 35 35 H 1.09001 * 109.46881 * 295.00390 * 14 10 9 36 36 H 1.09008 * 109.47314 * 54.99754 * 14 10 9 37 37 H 0.97010 * 119.99884 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.45998 * 58.27856 * 23 8 7 39 39 H 1.09001 * 109.46169 * 178.23806 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 2.0006 0.5121 5 6 2.2227 1.7704 -1.4433 6 6 2.9005 3.1434 -1.4344 7 6 4.2238 3.0487 -0.6716 8 7 3.9668 2.6008 0.7031 9 6 5.1971 2.6310 1.5053 10 6 5.8485 4.0105 1.3884 11 1 6.0589 4.2252 0.3407 12 6 4.9342 5.0319 1.9246 13 7 4.2285 5.8201 2.3385 14 6 7.1548 4.0268 2.1847 15 6 7.8573 5.3427 1.9705 16 1 7.4164 6.0922 1.3301 17 6 9.0635 5.5893 2.5913 18 7 9.6767 6.7375 2.4040 19 14 9.8265 4.2926 3.6984 20 1 10.7054 3.4081 2.8919 21 1 10.6291 4.9558 4.7572 22 1 8.7515 3.4829 4.3262 23 6 3.3594 1.2640 0.7212 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.2594 1.8430 -1.9482 28 1 2.8565 1.0548 -1.9670 29 1 2.2492 3.8675 -0.9448 30 1 3.0930 3.4615 -2.4590 31 1 4.7021 4.0279 -0.6511 32 1 4.8796 2.3346 -1.1696 33 1 4.9553 2.4307 2.5491 34 1 5.8878 1.8710 1.1400 35 1 6.9356 3.9003 3.2449 36 1 7.7966 3.2130 1.8468 37 1 10.5252 6.9112 2.8410 38 1 4.0194 0.5583 0.2168 39 1 3.2099 0.9470 1.7533 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246520634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:40 Heat of formation + Delta-G solvation = -26.426026 kcal Electronic energy + Delta-G solvation = -18723.953347 eV Core-core repulsion = 15859.360030 eV Total energy + Delta-G solvation = -2864.593317 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67393 -37.73722 -36.03767 -34.01430 -32.90573 -31.45630 -30.23841 -27.36844 -26.72161 -24.59629 -23.07178 -21.89327 -21.36145 -19.98156 -17.08951 -16.83500 -16.55015 -16.04519 -15.40308 -15.19006 -14.63384 -14.45588 -13.95151 -13.80189 -13.37443 -13.21546 -12.90394 -12.71724 -12.42102 -12.15959 -11.97551 -11.84034 -11.39796 -11.24536 -11.17003 -11.09411 -10.92720 -10.67405 -10.60019 -10.32384 -9.95700 -9.77486 -9.61821 -9.31980 -8.62553 -8.28192 -6.11573 -4.12359 3.25505 3.31427 3.34806 3.35672 3.68810 3.76022 4.16743 4.37756 4.62888 4.69225 4.79608 4.90901 5.00577 5.12261 5.18071 5.19756 5.23315 5.38598 5.44214 5.45850 5.48950 5.56451 5.67726 5.78607 5.83891 5.87242 5.92240 6.00949 6.19517 6.23847 6.30437 6.90065 6.92854 7.06439 7.10804 7.17807 7.62587 8.39298 8.52671 8.91626 9.48270 11.01482 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036009 B = 0.004580 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.390792 B = 6112.025372 C = 6366.305096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.091 3.909 4 H 0.069 0.931 5 C -0.140 4.140 6 C -0.114 4.114 7 C 0.042 3.958 8 N -0.538 5.538 9 C 0.062 3.938 10 C 0.015 3.985 11 H 0.108 0.892 12 C 0.252 3.748 13 N -0.468 5.468 14 C -0.005 4.005 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.062 3.938 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.026 0.974 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.043 0.957 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.960 -14.381 -7.080 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.033 3.967 4 H 0.087 0.913 5 C -0.178 4.178 6 C -0.152 4.152 7 C -0.085 4.085 8 N -0.264 5.264 9 C -0.066 4.066 10 C -0.007 4.007 11 H 0.125 0.875 12 C -0.066 4.066 13 N -0.145 5.145 14 C -0.044 4.044 15 C -0.566 4.566 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.704 3.296 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.066 4.066 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.097 -12.933 -6.198 20.823 hybrid contribution 1.194 -1.143 0.053 1.654 sum -13.903 -14.076 -6.145 20.717 Atomic orbital electron populations 1.22759 0.81121 1.02483 0.99990 1.87853 1.19595 1.28060 1.95096 1.22095 0.95056 0.84062 0.95449 0.91276 1.22074 1.01061 0.97651 0.97002 1.21537 0.96865 0.96651 1.00182 1.22297 0.96772 1.01543 0.87894 1.61869 1.27497 1.24687 1.12367 1.22258 0.89378 0.96237 0.98722 1.19096 0.92456 0.87388 1.01732 0.87478 1.28649 0.91929 0.93245 0.92729 1.80997 1.12613 1.10931 1.09940 1.19644 0.90210 0.99029 0.95538 1.21014 1.05306 0.99843 1.30440 0.90795 1.24988 0.96783 0.95307 0.96009 1.69908 1.16767 1.23130 1.43671 0.86818 0.79712 0.82076 0.80973 1.20042 1.21293 1.18815 1.21947 0.94085 0.89742 1.00859 0.89798 0.93984 0.94181 0.91989 0.91343 0.91076 0.91018 0.89385 0.94212 0.89871 0.92744 0.95557 0.94905 0.92552 0.93861 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.39 -4.34 10.35 -35.23 -0.36 -4.70 16 3 C 0.09 1.01 2.77 -26.66 -0.07 0.93 16 4 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 5 C -0.14 -1.40 5.62 -26.61 -0.15 -1.55 16 6 C -0.11 -1.21 6.09 -26.65 -0.16 -1.37 16 7 C 0.04 0.51 5.04 -3.83 -0.02 0.50 16 8 N -0.54 -7.09 4.38 -234.67 -1.03 -8.11 16 9 C 0.06 0.88 4.52 -3.82 -0.02 0.86 16 10 C 0.01 0.26 1.75 -93.41 -0.16 0.10 16 11 H 0.11 1.78 6.07 -51.93 -0.32 1.47 16 12 C 0.25 5.16 13.46 -20.76 -0.28 4.88 16 13 N -0.47 -10.56 18.54 42.15 0.78 -9.77 16 14 C -0.01 -0.11 3.49 -27.89 -0.10 -0.21 16 15 C -0.53 -14.14 9.15 -34.44 -0.32 -14.46 16 16 H 0.07 2.17 7.84 -52.49 -0.41 1.76 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 19 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 23 C 0.06 0.73 5.11 -3.84 -0.02 0.71 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 26 H 0.04 0.29 7.95 -51.93 -0.41 -0.12 16 27 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.16 5.71 -51.93 -0.30 0.86 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.57 7.20 -51.93 -0.37 0.20 16 36 H 0.03 0.65 7.57 -51.92 -0.39 0.25 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -31.15 316.48 -6.45 -37.59 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.41 Total: -3.13 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -0.30 Total: -6.35 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.53 Total: -44.08 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.36 Total: -4.70 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.15 -6.45 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246520634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.169 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds