Wall clock time and date at job start Sun Mar 29 2020 23:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00370 * 2 1 4 4 H 1.08002 * 120.00667 * 202.99605 * 3 2 1 5 5 C 1.38816 * 119.99418 * 23.00370 * 3 2 1 6 6 N 1.31621 * 120.00425 * 11.63113 * 5 3 2 7 7 Si 1.86804 * 119.99753 * 191.63789 * 5 3 2 8 8 H 1.48504 * 109.47208 * 59.99818 * 7 5 3 9 9 H 1.48503 * 109.46919 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47018 * 299.99711 * 7 5 3 11 11 C 1.46506 * 120.00104 * 180.02562 * 2 1 3 12 12 C 1.53037 * 109.46221 * 59.99611 * 11 2 1 13 13 C 1.53189 * 109.31556 * 178.61585 * 12 11 2 14 14 N 1.46928 * 108.77579 * 54.63430 * 13 12 11 15 15 C 1.34776 * 120.63189 * 126.38766 * 14 13 12 16 16 O 1.21278 * 120.00147 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.99789 * 0.02562 * 15 14 13 18 18 C 1.53000 * 117.49401 * 248.73869 * 17 15 14 19 19 C 1.53007 * 117.49762 * 180.08360 * 17 15 14 20 20 C 1.46920 * 118.73797 * 306.39299 * 14 13 12 21 21 C 1.53045 * 109.45855 * 299.93035 * 11 2 1 22 22 H 1.09005 * 109.46929 * 273.84093 * 1 2 3 23 23 H 1.09000 * 109.47355 * 33.84217 * 1 2 3 24 24 H 1.09006 * 109.46926 * 153.84321 * 1 2 3 25 25 H 0.96991 * 119.99897 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.45079 * 179.97438 * 11 2 1 27 27 H 1.09004 * 109.49713 * 298.56684 * 12 11 2 28 28 H 1.08999 * 109.50034 * 58.66228 * 12 11 2 29 29 H 1.08997 * 109.58845 * 174.42331 * 13 12 11 30 30 H 1.09000 * 109.58634 * 294.84923 * 13 12 11 31 31 H 1.08996 * 115.55276 * 34.41364 * 17 15 14 32 32 H 1.08994 * 117.50266 * 0.02562 * 18 17 15 33 33 H 1.09007 * 117.49725 * 145.01968 * 18 17 15 34 34 H 1.08997 * 117.49534 * 214.97661 * 19 17 15 35 35 H 1.09002 * 117.49414 * 359.97438 * 19 17 15 36 36 H 1.08995 * 109.59209 * 293.82131 * 20 14 13 37 37 H 1.08997 * 109.58962 * 173.39166 * 20 14 13 38 38 H 1.08998 * 109.49553 * 301.33604 * 21 11 2 39 39 H 1.08995 * 109.49966 * 61.43217 * 21 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1654 1.2231 -0.3654 5 6 1.5384 2.3402 0.4698 6 7 0.3979 2.2622 1.1222 7 14 2.3343 4.0044 0.1760 8 1 2.4681 4.2382 -1.2844 9 1 1.4885 5.0697 0.7719 10 1 3.6786 4.0284 0.8064 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0706 -1.2505 13 6 2.6212 -3.3808 -1.2653 14 7 2.3850 -4.0911 -0.0009 15 6 1.9583 -5.3695 -0.0008 16 8 1.7674 -5.9450 1.0495 17 6 1.7195 -6.0842 -1.3059 18 6 0.2729 -6.4231 -1.6713 19 6 1.2337 -7.5336 -1.2390 20 6 2.6226 -3.3811 1.2632 21 6 1.8289 -2.0709 1.2497 22 1 -0.3633 0.0688 1.0254 23 1 -0.3634 0.8535 -0.5723 24 1 -0.3633 -0.9225 -0.4531 25 1 -0.0294 3.0688 1.4501 26 1 3.2691 -1.0692 -0.0009 27 1 0.7603 -2.2918 -1.2381 28 1 2.0688 -1.4891 -2.1403 29 1 2.2898 -3.9994 -2.0993 30 1 3.6842 -3.1630 -1.3689 31 1 2.3945 -5.8168 -2.1188 32 1 -0.5060 -6.1287 -0.9680 33 1 -0.0037 -6.3788 -2.7247 34 1 1.5889 -8.2194 -2.0082 35 1 1.0873 -7.9702 -0.2510 36 1 3.6856 -3.1633 1.3658 37 1 2.2921 -3.9998 2.0975 38 1 2.0711 -1.4896 2.1393 39 1 0.7617 -2.2921 1.2385 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:07 Heat of formation + Delta-G solvation = 13.888502 kcal Electronic energy + Delta-G solvation = -19240.629506 eV Core-core repulsion = 16377.784358 eV Total energy + Delta-G solvation = -2862.845148 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18147 -37.81081 -36.07609 -35.02018 -32.15967 -30.82120 -29.71863 -26.00833 -25.57358 -23.93148 -22.65754 -22.54950 -21.65687 -19.56020 -18.34316 -17.47417 -16.74043 -15.87224 -15.21082 -14.99156 -14.67276 -14.14076 -13.92447 -13.52447 -13.36273 -12.98037 -12.54581 -12.27869 -12.21790 -11.73298 -11.64629 -11.44446 -10.96373 -10.84870 -10.77351 -10.69571 -10.56180 -10.38429 -10.25015 -10.11209 -9.84555 -9.68673 -9.53003 -8.55431 -8.42012 -6.74030 -5.71333 -3.17858 2.57308 3.10349 3.38390 3.43956 3.44531 3.78800 4.46446 4.49685 4.66467 4.77818 4.94918 5.15097 5.27155 5.36351 5.43241 5.46380 5.50779 5.61748 5.66382 5.80154 5.83583 5.92176 5.99630 6.05690 6.18176 6.27469 6.40255 6.55009 6.65129 6.81230 6.99626 7.02558 7.40458 7.57818 7.74438 7.81083 8.30800 8.41179 9.24902 9.88372 10.38086 11.33438 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.045150 B = 0.004780 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.005169 B = 5856.263912 C = 5921.560705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.147 4.147 13 C 0.110 3.890 14 N -0.602 5.602 15 C 0.542 3.458 16 O -0.552 6.552 17 C -0.193 4.193 18 C -0.152 4.152 19 C -0.151 4.151 20 C 0.113 3.887 21 C -0.144 4.144 22 H 0.026 0.974 23 H 0.042 0.958 24 H -0.003 1.003 25 H 0.252 0.748 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 -14.515 -6.713 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.187 4.187 13 C -0.013 4.013 14 N -0.334 5.334 15 C 0.330 3.670 16 O -0.430 6.430 17 C -0.214 4.214 18 C -0.189 4.189 19 C -0.188 4.188 20 C -0.009 4.009 21 C -0.184 4.184 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.015 0.985 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.428 -14.615 -6.074 16.012 hybrid contribution 0.379 1.187 -0.165 1.257 sum 2.807 -13.428 -6.238 15.070 Atomic orbital electron populations 1.20730 0.82777 0.95384 0.99072 1.43942 1.01771 1.00157 1.85890 1.19181 0.98268 0.85577 1.35522 0.91515 1.25028 0.97787 0.98491 0.98278 1.70058 1.18499 1.27243 1.39485 0.86343 0.78501 0.83880 0.77830 1.21127 1.21673 1.20970 1.20284 0.95957 0.86055 0.90630 1.22473 1.00204 0.94720 1.01345 1.21834 1.00224 0.94175 0.85105 1.48083 1.65626 1.11560 1.08113 1.19620 0.76288 0.81339 0.89709 1.90654 1.52767 1.66319 1.33305 1.22222 1.00745 1.00223 0.98229 1.22927 0.91102 1.02320 1.02555 1.22947 1.02134 0.89905 1.03817 1.21704 0.99772 0.93786 0.85688 1.22499 0.99961 0.94419 1.01553 0.95525 0.93956 0.98490 0.93734 0.91961 0.91913 0.90803 0.90198 0.91501 0.85860 0.88254 0.87843 0.88124 0.87553 0.91762 0.89720 0.90637 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 8.04 59.85 0.48 4.53 16 2 N -0.60 -14.57 2.81 -173.43 -0.49 -15.06 16 3 C -0.26 -6.90 9.59 -15.06 -0.14 -7.04 16 4 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 5 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 6 N -0.91 -26.38 10.64 55.49 0.59 -25.79 16 7 Si 0.90 21.65 29.57 -169.99 -5.03 16.62 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.18 3.51 2.55 -67.88 -0.17 3.33 16 12 C -0.15 -2.36 5.32 -26.61 -0.14 -2.51 16 13 C 0.11 1.40 6.30 -3.71 -0.02 1.38 16 14 N -0.60 -8.88 2.97 -172.78 -0.51 -9.39 16 15 C 0.54 8.21 7.48 -10.98 -0.08 8.12 16 16 O -0.55 -10.19 15.67 5.56 0.09 -10.10 16 17 C -0.19 -2.16 4.96 -91.77 -0.45 -2.61 16 18 C -0.15 -1.49 10.24 -26.69 -0.27 -1.77 16 19 C -0.15 -1.49 10.05 -26.69 -0.27 -1.76 16 20 C 0.11 1.79 6.43 -3.71 -0.02 1.77 16 21 C -0.14 -2.66 5.34 -26.61 -0.14 -2.80 16 22 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 23 H 0.04 1.12 7.22 -51.93 -0.37 0.74 16 24 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 25 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.06 1.23 7.86 -51.93 -0.41 0.82 16 27 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 0.83 5.68 -51.93 -0.29 0.53 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.12 1.11 6.82 -51.93 -0.35 0.76 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.11 1.21 7.67 -51.93 -0.40 0.82 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.41 7.01 -51.93 -0.36 1.04 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -31.12 308.09 -8.21 -39.33 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.17 Total: -0.88 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.34 Total: 0.63 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.41 Total: -50.24 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.12 -8.21 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.222 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds