Wall clock time and date at job start Sun Mar 29 2020 23:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00370 * 2 1 4 4 H 1.08002 * 120.00667 * 202.99605 * 3 2 1 5 5 C 1.38816 * 119.99418 * 23.00370 * 3 2 1 6 6 N 1.31621 * 120.00425 * 11.63113 * 5 3 2 7 7 Si 1.86804 * 119.99753 * 191.63789 * 5 3 2 8 8 H 1.48504 * 109.47208 * 59.99818 * 7 5 3 9 9 H 1.48503 * 109.46919 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47018 * 299.99711 * 7 5 3 11 11 C 1.46506 * 120.00104 * 180.02562 * 2 1 3 12 12 C 1.53037 * 109.46221 * 59.99611 * 11 2 1 13 13 C 1.53189 * 109.31556 * 178.61585 * 12 11 2 14 14 N 1.46928 * 108.77579 * 54.63430 * 13 12 11 15 15 C 1.34776 * 120.63189 * 126.38766 * 14 13 12 16 16 O 1.21278 * 120.00147 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.99789 * 0.02562 * 15 14 13 18 18 C 1.53000 * 117.49401 * 248.73869 * 17 15 14 19 19 C 1.53007 * 117.49762 * 180.08360 * 17 15 14 20 20 C 1.46920 * 118.73797 * 306.39299 * 14 13 12 21 21 C 1.53045 * 109.45855 * 299.93035 * 11 2 1 22 22 H 1.09005 * 109.46929 * 273.84093 * 1 2 3 23 23 H 1.09000 * 109.47355 * 33.84217 * 1 2 3 24 24 H 1.09006 * 109.46926 * 153.84321 * 1 2 3 25 25 H 0.96991 * 119.99897 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.45079 * 179.97438 * 11 2 1 27 27 H 1.09004 * 109.49713 * 298.56684 * 12 11 2 28 28 H 1.08999 * 109.50034 * 58.66228 * 12 11 2 29 29 H 1.08997 * 109.58845 * 174.42331 * 13 12 11 30 30 H 1.09000 * 109.58634 * 294.84923 * 13 12 11 31 31 H 1.08996 * 115.55276 * 34.41364 * 17 15 14 32 32 H 1.08994 * 117.50266 * 0.02562 * 18 17 15 33 33 H 1.09007 * 117.49725 * 145.01968 * 18 17 15 34 34 H 1.08997 * 117.49534 * 214.97661 * 19 17 15 35 35 H 1.09002 * 117.49414 * 359.97438 * 19 17 15 36 36 H 1.08995 * 109.59209 * 293.82131 * 20 14 13 37 37 H 1.08997 * 109.58962 * 173.39166 * 20 14 13 38 38 H 1.08998 * 109.49553 * 301.33604 * 21 11 2 39 39 H 1.08995 * 109.49966 * 61.43217 * 21 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1654 1.2231 -0.3654 5 6 1.5384 2.3402 0.4698 6 7 0.3979 2.2622 1.1222 7 14 2.3343 4.0044 0.1760 8 1 2.4681 4.2382 -1.2844 9 1 1.4885 5.0697 0.7719 10 1 3.6786 4.0284 0.8064 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0706 -1.2505 13 6 2.6212 -3.3808 -1.2653 14 7 2.3850 -4.0911 -0.0009 15 6 1.9583 -5.3695 -0.0008 16 8 1.7674 -5.9450 1.0495 17 6 1.7195 -6.0842 -1.3059 18 6 0.2729 -6.4231 -1.6713 19 6 1.2337 -7.5336 -1.2390 20 6 2.6226 -3.3811 1.2632 21 6 1.8289 -2.0709 1.2497 22 1 -0.3633 0.0688 1.0254 23 1 -0.3634 0.8535 -0.5723 24 1 -0.3633 -0.9225 -0.4531 25 1 -0.0294 3.0688 1.4501 26 1 3.2691 -1.0692 -0.0009 27 1 0.7603 -2.2918 -1.2381 28 1 2.0688 -1.4891 -2.1403 29 1 2.2898 -3.9994 -2.0993 30 1 3.6842 -3.1630 -1.3689 31 1 2.3945 -5.8168 -2.1188 32 1 -0.5060 -6.1287 -0.9680 33 1 -0.0037 -6.3788 -2.7247 34 1 1.5889 -8.2194 -2.0082 35 1 1.0873 -7.9702 -0.2510 36 1 3.6856 -3.1633 1.3658 37 1 2.2921 -3.9998 2.0975 38 1 2.0711 -1.4896 2.1393 39 1 0.7617 -2.2921 1.2385 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260518725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:07 Heat of formation + Delta-G solvation = -4.697233 kcal Electronic energy + Delta-G solvation = -19241.435444 eV Core-core repulsion = 16377.784358 eV Total energy + Delta-G solvation = -2863.651086 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35430 -39.18691 -37.11652 -36.62445 -33.91838 -32.15523 -31.45057 -28.03745 -26.94077 -25.28397 -24.03278 -23.32795 -23.11850 -20.97061 -19.56458 -18.75934 -18.55050 -17.12920 -16.86981 -16.25957 -15.77306 -15.68077 -15.26139 -15.04528 -14.91550 -14.46003 -14.06548 -13.75793 -13.39713 -13.16578 -13.09521 -12.79023 -12.60840 -12.41399 -12.35742 -12.22978 -12.09511 -11.82044 -11.63670 -11.49007 -11.35703 -11.23600 -10.80811 -10.58932 -9.67117 -8.75724 -7.80387 -5.29033 1.47263 1.48254 1.50035 1.56503 1.98690 2.52215 2.95696 3.33195 3.48701 3.63840 3.82885 3.94487 4.01551 4.11620 4.15123 4.21340 4.36062 4.38576 4.56876 4.72852 4.76925 4.80310 4.82751 4.90975 4.92001 5.00221 5.07160 5.10822 5.24874 5.26032 5.36902 5.50507 5.60428 5.67288 5.71742 6.34892 6.43919 7.15111 7.17142 7.89958 8.34956 9.22908 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.045150 B = 0.004780 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.005169 B = 5856.263912 C = 5921.560705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.611 5.611 3 C -0.261 4.261 4 H 0.075 0.925 5 C -0.055 4.055 6 N -0.942 5.942 7 Si 0.969 3.031 8 H -0.276 1.276 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.173 3.827 12 C -0.136 4.136 13 C 0.116 3.884 14 N -0.604 5.604 15 C 0.534 3.466 16 O -0.595 6.595 17 C -0.200 4.200 18 C -0.145 4.145 19 C -0.147 4.147 20 C 0.122 3.878 21 C -0.131 4.131 22 H -0.006 1.006 23 H 0.015 0.985 24 H 0.025 0.975 25 H 0.246 0.754 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.133 -15.779 -9.228 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.333 5.333 3 C -0.391 4.391 4 H 0.093 0.907 5 C -0.250 4.250 6 N -0.590 5.590 7 Si 0.797 3.203 8 H -0.202 1.202 9 H -0.225 1.225 10 H -0.201 1.201 11 C 0.066 3.934 12 C -0.175 4.175 13 C -0.007 4.007 14 N -0.335 5.335 15 C 0.324 3.676 16 O -0.476 6.476 17 C -0.221 4.221 18 C -0.182 4.182 19 C -0.184 4.184 20 C -0.001 4.001 21 C -0.172 4.172 22 H 0.012 0.988 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.950 -15.907 -8.621 18.520 hybrid contribution -0.086 1.519 0.651 1.654 sum 3.864 -14.389 -7.971 16.897 Atomic orbital electron populations 1.20385 0.83368 0.95474 0.96849 1.44188 1.01756 1.01415 1.85980 1.19585 0.98574 0.86658 1.34330 0.90719 1.25811 0.98528 1.01956 0.98672 1.70245 1.20093 1.27514 1.41099 0.85315 0.77600 0.79477 0.77883 1.20239 1.22501 1.20103 1.20542 0.95520 0.84694 0.92645 1.22290 1.00090 0.95974 0.99185 1.21968 1.00951 0.92604 0.85128 1.48186 1.65400 1.11732 1.08207 1.20402 0.75100 0.81249 0.90806 1.90635 1.54415 1.67259 1.35317 1.22309 1.02335 1.00695 0.96753 1.23028 0.89798 1.01628 1.03792 1.23028 1.01856 0.89849 1.03648 1.21485 1.00090 0.92033 0.86521 1.22287 0.99152 0.95546 1.00191 0.98762 0.96600 0.95700 0.94487 0.91803 0.92998 0.90265 0.86626 0.89412 0.82664 0.90297 0.84752 0.84973 0.89898 0.89991 0.90919 0.93012 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.26 8.04 127.77 1.03 10.29 16 2 N -0.61 -30.02 2.81 -702.60 -1.97 -31.99 16 3 C -0.26 -14.08 9.59 84.03 0.81 -13.27 16 4 H 0.08 3.83 7.82 -2.91 -0.02 3.81 16 5 C -0.06 -3.07 5.12 84.86 0.43 -2.64 16 6 N -0.94 -56.38 10.64 21.65 0.23 -56.15 16 7 Si 0.97 44.75 29.57 68.60 2.03 46.78 16 8 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 9 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 C 0.17 6.61 2.55 45.02 0.11 6.72 16 12 C -0.14 -4.02 5.32 30.67 0.16 -3.85 16 13 C 0.12 2.50 6.30 86.36 0.54 3.05 16 14 N -0.60 -16.51 2.97 -818.93 -2.43 -18.95 16 15 C 0.53 15.22 7.48 87.66 0.66 15.88 16 16 O -0.59 -21.89 15.67 -3.02 -0.05 -21.93 16 17 C -0.20 -3.78 4.96 -11.54 -0.06 -3.83 16 18 C -0.15 -2.40 10.24 30.62 0.31 -2.09 16 19 C -0.15 -2.47 10.05 30.62 0.31 -2.17 16 20 C 0.12 3.78 6.43 86.36 0.56 4.33 16 21 C -0.13 -4.90 5.34 30.67 0.16 -4.74 16 22 H -0.01 -0.33 7.42 -2.38 -0.02 -0.35 16 23 H 0.02 0.84 7.22 -2.39 -0.02 0.82 16 24 H 0.02 1.08 6.46 -2.38 -0.02 1.06 16 25 H 0.25 14.41 8.31 -92.72 -0.77 13.64 16 26 H 0.06 2.42 7.86 -2.39 -0.02 2.40 16 27 H 0.05 1.66 6.72 -2.38 -0.02 1.64 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.12 1.76 5.68 -2.39 -0.01 1.75 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.16 1.93 6.82 -2.39 -0.02 1.91 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.82 7.67 -2.39 -0.02 1.80 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.45 7.01 -2.39 -0.02 2.43 16 38 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.61 7.72 -2.39 -0.02 1.59 16 Total: -1.00 -69.70 308.09 3.85 -65.84 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.02 Total: 8.72 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.03 Total: 7.68 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.18 Total: -107.09 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -69.70 3.85 -65.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.146 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds