Wall clock time and date at job start Sun Mar 29 2020 23:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99751 * 2 1 4 4 H 1.08000 * 120.00191 * 202.07483 * 3 2 1 5 5 C 1.38815 * 119.99854 * 22.06697 * 3 2 1 6 6 N 1.31616 * 119.99920 * 12.41156 * 5 3 2 7 7 Si 1.86794 * 119.99924 * 192.40111 * 5 3 2 8 8 H 1.48505 * 109.47156 * 90.00664 * 7 5 3 9 9 H 1.48500 * 109.47318 * 210.00162 * 7 5 3 10 10 H 1.48496 * 109.47592 * 330.00509 * 7 5 3 11 11 C 1.46497 * 120.00383 * 180.02562 * 2 1 3 12 12 H 1.09003 * 109.52402 * 179.91436 * 11 2 1 13 13 C 1.53037 * 109.49694 * 59.83811 * 11 2 1 14 14 C 1.53043 * 109.54167 * 178.68172 * 13 11 2 15 15 C 1.53193 * 109.30589 * 61.36274 * 14 13 11 16 16 N 1.46926 * 108.77989 * 305.36251 * 15 14 13 17 17 C 1.34773 * 120.63391 * 233.88817 * 16 15 14 18 18 O 1.21278 * 119.99971 * 179.72292 * 17 16 15 19 19 C 1.50697 * 120.00090 * 359.71697 * 17 16 15 20 20 C 1.53002 * 117.50287 * 248.75212 * 19 17 16 21 21 C 1.52996 * 117.50261 * 180.08719 * 19 17 16 22 22 C 1.46926 * 118.73408 * 53.61558 * 16 15 14 23 23 H 1.09000 * 109.46900 * 274.30424 * 1 2 3 24 24 H 1.08996 * 109.47610 * 34.30247 * 1 2 3 25 25 H 1.08999 * 109.46810 * 154.31051 * 1 2 3 26 26 H 0.97007 * 119.99737 * 179.97438 * 6 5 3 27 27 H 1.09003 * 109.45975 * 298.70480 * 13 11 2 28 28 H 1.09007 * 109.46492 * 58.67186 * 13 11 2 29 29 H 1.08994 * 109.49774 * 181.31111 * 14 13 11 30 30 H 1.09001 * 109.49568 * 301.41686 * 14 13 11 31 31 H 1.09001 * 109.58251 * 185.57858 * 15 14 13 32 32 H 1.09001 * 109.58804 * 65.15798 * 15 14 13 33 33 H 1.09000 * 115.55004 * 34.41986 * 19 17 16 34 34 H 1.08996 * 117.49381 * 359.97438 * 20 19 17 35 35 H 1.09001 * 117.50055 * 145.01991 * 20 19 17 36 36 H 1.08997 * 117.50217 * 214.98264 * 21 19 17 37 37 H 1.09001 * 117.49372 * 0.02562 * 21 19 17 38 38 H 1.09001 * 109.59038 * 66.17654 * 22 16 15 39 39 H 1.08997 * 109.58672 * 186.60537 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1703 1.2203 -0.3515 5 6 1.5318 2.3441 0.4517 6 7 0.3899 2.2700 1.1019 7 14 2.3211 4.0075 0.1368 8 1 1.8344 4.5494 -1.1574 9 1 1.9593 4.9425 1.2323 10 1 3.7972 3.8533 0.0851 11 6 2.1976 -1.2687 -0.0006 12 1 3.2694 -1.0704 -0.0020 13 6 1.8253 -2.0729 -1.2482 14 6 2.6147 -3.3839 -1.2666 15 6 2.2498 -4.2122 -0.0307 16 7 2.4685 -3.3929 1.1692 17 6 3.2463 -3.8412 2.1744 18 8 3.4230 -3.1533 3.1575 19 6 3.8962 -5.1974 2.0770 20 6 3.3945 -6.2909 3.0223 21 6 4.7656 -5.6502 3.2517 22 6 1.8280 -2.0731 1.2497 23 1 -0.3633 0.0771 1.0248 24 1 -0.3634 0.8489 -0.5791 25 1 -0.3633 -0.9261 -0.4455 26 1 -0.0417 3.0793 1.4178 27 1 0.7576 -2.2920 -1.2338 28 1 2.0648 -1.4925 -2.1393 29 1 2.3664 -3.9454 -2.1672 30 1 3.6826 -3.1657 -1.2561 31 1 2.8805 -5.1001 0.0133 32 1 1.2021 -4.5080 -0.0853 33 1 4.2050 -5.4999 1.0764 34 1 2.5946 -6.0292 3.7149 35 1 3.3735 -7.3128 2.6437 36 1 5.6462 -6.2508 3.0240 37 1 4.8672 -4.9673 4.0952 38 1 0.7459 -2.1944 1.2995 39 1 2.1804 -1.5495 2.1384 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260706459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:11 Heat of formation + Delta-G solvation = 15.270134 kcal Electronic energy + Delta-G solvation = -19329.433367 eV Core-core repulsion = 16466.648131 eV Total energy + Delta-G solvation = -2862.785236 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06884 -37.76748 -35.92354 -35.04907 -32.27523 -31.24764 -28.90509 -26.01105 -25.76003 -23.97455 -22.76450 -22.47595 -21.60389 -19.25981 -18.48104 -17.41488 -16.71275 -15.68653 -15.37730 -14.82932 -14.36630 -14.15798 -13.96985 -13.61447 -13.53565 -12.65490 -12.52978 -12.48564 -12.26899 -11.82775 -11.64418 -11.16426 -11.01943 -10.79165 -10.70495 -10.59411 -10.47779 -10.37995 -10.30506 -10.14528 -9.83841 -9.73032 -9.45802 -8.56110 -8.26590 -6.74347 -5.70140 -3.15979 2.70513 3.22904 3.41251 3.47124 3.48817 3.83603 4.50580 4.55480 4.69441 4.81798 4.93074 5.09434 5.18985 5.30568 5.46421 5.46591 5.55837 5.63107 5.65129 5.78645 5.84977 5.95590 6.03080 6.06191 6.15756 6.25488 6.40339 6.52763 6.71835 6.80821 6.95724 7.01757 7.40534 7.73732 7.74260 7.83679 8.40871 8.48977 9.25744 9.88291 10.36619 11.34748 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030001 B = 0.005557 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.091106 B = 5037.800966 C = 5444.398529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.108 3.892 16 N -0.603 5.603 17 C 0.538 3.462 18 O -0.543 6.543 19 C -0.192 4.192 20 C -0.154 4.154 21 C -0.150 4.150 22 C 0.098 3.902 23 H 0.028 0.972 24 H 0.044 0.956 25 H -0.001 1.001 26 H 0.252 0.748 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.999 -17.376 -2.648 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.171 4.171 15 C -0.015 4.015 16 N -0.336 5.336 17 C 0.325 3.675 18 O -0.421 6.421 19 C -0.213 4.213 20 C -0.192 4.192 21 C -0.188 4.188 22 C -0.025 4.025 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.955 -16.810 -2.054 17.391 hybrid contribution 0.240 0.956 -0.280 1.025 sum 4.194 -15.854 -2.334 16.565 Atomic orbital electron populations 1.20791 0.82562 0.95598 0.99298 1.43945 1.01871 1.00033 1.85530 1.19244 0.97871 0.85148 1.36212 0.91354 1.25022 0.97788 0.98529 0.98220 1.70075 1.18368 1.27056 1.39705 0.86224 0.78807 0.84016 0.77318 1.21517 1.21723 1.20492 1.20627 0.96444 0.86211 0.90790 0.91788 1.22088 0.99648 0.94989 1.00572 1.21923 1.01034 0.97327 0.96815 1.21750 1.01293 0.93619 0.84809 1.48208 1.48506 1.19080 1.17780 1.19615 0.78483 0.86744 0.82649 1.90695 1.61793 1.58085 1.31499 1.22255 1.06699 0.94655 0.97727 1.22914 0.98648 0.96294 1.01320 1.22946 0.93999 1.02667 0.99168 1.22541 0.96665 0.80988 1.02357 0.95349 0.93706 0.98279 0.93730 0.92253 0.91719 0.91279 0.91772 0.90175 0.91577 0.85930 0.88353 0.88019 0.88144 0.87454 0.92120 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 7.91 59.85 0.47 4.46 16 2 N -0.59 -14.92 2.82 -173.35 -0.49 -15.41 16 3 C -0.26 -7.13 9.60 -15.06 -0.14 -7.27 16 4 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 5 C 0.00 0.08 5.11 -17.43 -0.09 -0.01 16 6 N -0.91 -26.83 10.63 55.49 0.59 -26.24 16 7 Si 0.91 22.28 29.57 -169.99 -5.03 17.25 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 C 0.17 3.51 2.74 -67.81 -0.19 3.32 16 12 H 0.06 1.42 7.86 -51.93 -0.41 1.01 16 13 C -0.13 -2.22 5.13 -26.69 -0.14 -2.35 16 14 C -0.13 -1.66 6.08 -26.61 -0.16 -1.82 16 15 C 0.11 1.31 6.35 -3.71 -0.02 1.28 16 16 N -0.60 -9.81 2.97 -172.77 -0.51 -10.32 16 17 C 0.54 9.04 7.48 -10.99 -0.08 8.95 16 18 O -0.54 -11.52 15.67 5.56 0.09 -11.43 16 19 C -0.19 -2.27 5.12 -91.77 -0.47 -2.74 16 20 C -0.15 -1.51 10.24 -26.69 -0.27 -1.78 16 21 C -0.15 -1.61 10.05 -26.69 -0.27 -1.88 16 22 C 0.10 1.96 5.79 -3.71 -0.02 1.94 16 23 H 0.03 0.76 7.41 -51.93 -0.39 0.37 16 24 H 0.04 1.19 7.20 -51.93 -0.37 0.81 16 25 H 0.00 -0.03 6.45 -51.93 -0.33 -0.36 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.06 0.98 6.71 -51.93 -0.35 0.64 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.75 5.51 -51.93 -0.29 0.46 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.12 1.16 6.56 -51.93 -0.34 0.81 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 1.36 7.67 -51.93 -0.40 0.96 16 38 H 0.06 1.22 7.52 -51.93 -0.39 0.83 16 39 H 0.09 2.15 7.00 -51.93 -0.36 1.79 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -32.21 307.59 -8.23 -40.44 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.13 Total: -1.03 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.38 Total: 2.10 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.41 Total: -51.97 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.21 -8.23 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260706459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.715 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds