Wall clock time and date at job start Sun Mar 29 2020 23:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47234 * 2 1 4 4 N 1.30524 * 126.34490 * 90.02268 * 3 2 1 5 5 N 1.28590 * 109.67011 * 179.73295 * 4 3 2 6 6 C 1.30519 * 109.67750 * 0.02562 * 5 4 3 7 7 C 1.50696 * 126.34678 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47030 * 89.97496 * 7 6 5 9 9 C 1.46896 * 110.99806 * 293.95118 * 8 7 6 10 10 C 1.53001 * 109.47091 * 163.98880 * 9 8 7 11 11 C 1.46900 * 111.00125 * 170.00188 * 8 7 6 12 12 C 1.50706 * 109.46803 * 284.31397 * 11 8 7 13 13 H 1.07995 * 120.00024 * 4.90170 * 12 11 8 14 14 C 1.37876 * 119.99723 * 184.90201 * 12 11 8 15 15 N 1.31514 * 119.99593 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00177 * 359.97438 * 14 12 11 17 17 H 1.48492 * 109.47216 * 90.00153 * 16 14 12 18 18 H 1.48509 * 109.47169 * 210.00277 * 16 14 12 19 19 H 1.48498 * 109.47144 * 329.99782 * 16 14 12 20 20 N 1.35491 * 126.34647 * 269.71358 * 3 2 1 21 21 C 1.46499 * 126.98081 * 0.23765 * 20 3 2 22 22 H 1.08997 * 109.46773 * 299.99954 * 1 2 3 23 23 H 1.09003 * 109.46875 * 59.99826 * 1 2 3 24 24 H 1.08997 * 109.47251 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46773 * 240.00045 * 2 1 3 26 26 H 1.09003 * 109.46875 * 120.00174 * 2 1 3 27 27 H 1.08998 * 109.47493 * 209.96983 * 7 6 5 28 28 H 1.08994 * 109.47317 * 329.97363 * 7 6 5 29 29 H 1.09000 * 109.47425 * 283.98510 * 9 8 7 30 30 H 1.08997 * 109.47425 * 43.99152 * 9 8 7 31 31 H 1.08996 * 109.47152 * 59.29341 * 10 9 8 32 32 H 1.09004 * 109.47076 * 179.29083 * 10 9 8 33 33 H 1.08999 * 109.47202 * 299.28874 * 10 9 8 34 34 H 1.09004 * 109.47124 * 44.30866 * 11 8 7 35 35 H 1.09000 * 109.47456 * 164.31521 * 11 8 7 36 36 H 0.97001 * 120.00110 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47021 * 90.02995 * 21 20 3 38 38 H 1.09003 * 109.47441 * 210.02758 * 21 20 3 39 39 H 1.09001 * 109.47504 * 330.02907 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2906 2.1500 1.0513 5 7 2.7065 3.3095 0.6824 6 6 2.7319 3.3730 -0.6210 7 6 3.1571 4.5579 -1.4494 8 7 4.5997 4.4770 -1.7153 9 6 5.3726 4.6225 -0.4746 10 6 6.8071 4.1445 -0.7084 11 6 5.0084 5.4773 -2.7105 12 6 4.5795 5.0251 -4.0826 13 1 3.9872 4.1291 -4.1952 14 6 4.9432 5.7554 -5.1941 15 7 4.5684 5.3610 -6.3914 16 14 5.9670 7.3055 -4.9992 17 1 7.4091 6.9576 -5.0629 18 1 5.6384 8.2564 -6.0916 19 1 5.6672 7.9352 -3.6881 20 7 2.3052 2.1761 -1.0913 21 6 2.1671 1.7791 -2.4947 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.6130 4.5551 -2.3938 28 1 2.9387 5.4776 -0.9069 29 1 5.3832 5.6701 -0.1738 30 1 4.9137 4.0233 0.3118 31 1 7.2619 4.7354 -1.5034 32 1 7.3840 4.2642 0.2087 33 1 6.7974 3.0934 -0.9969 34 1 4.5380 6.4331 -2.4794 35 1 6.0923 5.5907 -2.6876 36 1 4.8239 5.8749 -7.1734 37 1 1.1653 2.0269 -2.8455 38 1 2.9046 2.3100 -3.0968 39 1 2.3287 0.7050 -2.5861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267063002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:49 Heat of formation + Delta-G solvation = 55.556067 kcal Electronic energy + Delta-G solvation = -19153.097783 eV Core-core repulsion = 16324.352227 eV Total energy + Delta-G solvation = -2828.745556 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.13860 -38.82997 -36.18177 -34.97974 -34.62233 -32.25911 -31.32230 -29.27562 -28.42945 -26.60086 -24.99304 -24.12403 -22.31861 -21.61949 -21.18394 -19.01130 -17.78615 -17.61065 -16.66651 -16.52321 -15.98204 -15.69519 -15.25158 -15.10019 -14.62945 -14.47843 -14.31682 -13.92059 -13.65646 -13.50329 -13.30775 -12.98279 -12.75123 -12.60039 -12.56982 -12.40388 -12.24439 -12.07600 -11.92070 -11.63225 -11.47446 -11.29354 -11.06233 -10.73828 -10.06062 -9.16526 -8.25635 -6.27091 0.80052 1.36751 1.39431 1.48052 1.58363 1.78699 2.36485 3.03312 3.14523 3.35398 3.50764 3.81259 3.89283 4.13736 4.15969 4.28232 4.35603 4.37503 4.49288 4.56768 4.62351 4.65923 4.72162 4.81560 4.88029 4.97327 4.99747 5.02358 5.13369 5.18937 5.20195 5.27304 5.33705 5.57489 5.91540 5.99314 6.20755 6.58444 6.77109 7.36058 7.72877 8.89775 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.005934 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.781859 B = 4717.493856 C = 5377.690171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C 0.177 3.823 4 N -0.338 5.338 5 N -0.327 5.327 6 C 0.188 3.812 7 C 0.150 3.850 8 N -0.531 5.531 9 C 0.044 3.956 10 C -0.136 4.136 11 C 0.171 3.829 12 C -0.508 4.508 13 H 0.050 0.950 14 C 0.017 3.983 15 N -0.942 5.942 16 Si 0.933 3.067 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.254 1.254 20 N -0.459 5.459 21 C 0.068 3.932 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.048 0.952 34 H -0.008 1.008 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -8.962 9.204 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.091 4.091 4 N -0.178 5.178 5 N -0.168 5.168 6 C -0.081 4.081 7 C 0.020 3.980 8 N -0.257 5.257 9 C -0.084 4.084 10 C -0.194 4.194 11 C 0.044 3.956 12 C -0.546 4.546 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.583 5.583 16 Si 0.758 3.242 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.178 1.178 20 N -0.149 5.149 21 C -0.074 4.074 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.009 0.991 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.665 -8.967 10.244 14.391 hybrid contribution 0.195 1.354 -1.398 1.956 sum -4.471 -7.613 8.846 12.498 Atomic orbital electron populations 1.21710 0.92529 1.03875 1.01791 1.20236 0.97356 0.83735 1.05943 1.25555 1.02415 0.98910 0.82242 1.74070 1.18541 0.99446 1.25713 1.74091 1.19493 1.14098 1.09100 1.24661 1.01698 0.89876 0.91858 1.20204 0.90539 0.90188 0.97095 1.61885 1.02018 1.51801 1.09987 1.22180 0.95326 0.99256 0.91617 1.21696 0.94849 1.01108 1.01701 1.20030 0.96106 0.89050 0.90410 1.21174 1.33173 1.10345 0.89938 0.93163 1.25639 0.97071 1.00581 0.94776 1.70003 1.48122 1.41301 0.98841 0.85922 0.79699 0.79996 0.78615 1.19340 1.21023 1.17782 1.46090 1.47533 1.11171 1.10057 1.22374 1.04806 1.04206 0.75998 0.93417 0.92888 0.88630 0.87572 0.87637 0.88891 0.92187 0.94987 0.91166 0.93200 0.90567 0.93248 0.99059 0.94647 0.92537 0.88427 0.89981 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.90 71.98 0.71 -1.35 16 2 C -0.03 -0.58 6.29 29.85 0.19 -0.39 16 3 C 0.18 5.09 7.28 137.98 1.01 6.09 16 4 N -0.34 -12.22 12.21 -50.15 -0.61 -12.83 16 5 N -0.33 -12.77 11.11 -50.16 -0.56 -13.32 16 6 C 0.19 6.83 6.70 137.98 0.92 7.75 16 7 C 0.15 5.68 4.96 85.55 0.42 6.10 16 8 N -0.53 -21.56 4.37 -905.37 -3.96 -25.52 16 9 C 0.04 1.60 5.55 86.30 0.48 2.08 16 10 C -0.14 -4.43 9.99 71.98 0.72 -3.71 16 11 C 0.17 7.76 3.65 85.56 0.31 8.07 16 12 C -0.51 -27.06 9.17 25.60 0.23 -26.83 16 13 H 0.05 2.89 7.84 -2.91 -0.02 2.87 16 14 C 0.02 0.95 5.47 84.65 0.46 1.41 16 15 N -0.94 -55.44 13.96 21.45 0.30 -55.14 16 16 Si 0.93 42.14 27.37 68.60 1.88 44.02 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.25 -10.83 6.69 99.48 0.67 -10.17 16 20 N -0.46 -13.94 3.15 -527.25 -1.66 -15.60 16 21 C 0.07 1.62 10.71 127.77 1.37 2.99 16 22 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 1.34 7.21 -2.39 -0.02 1.32 16 26 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 3.65 7.03 -2.39 -0.02 3.63 16 28 H 0.06 2.22 8.12 -2.39 -0.02 2.20 16 29 H 0.03 1.12 8.05 -2.39 -0.02 1.10 16 30 H 0.07 2.64 6.08 -2.39 -0.01 2.63 16 31 H 0.05 1.69 6.52 -2.39 -0.02 1.67 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H -0.01 -0.38 7.40 -2.39 -0.02 -0.40 16 35 H 0.04 1.60 5.40 -2.39 -0.01 1.59 16 36 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.52 7.75 -2.39 -0.02 2.50 16 39 H 0.12 2.01 7.19 -2.39 -0.02 2.00 16 Total: -1.00 -67.76 316.64 3.20 -64.56 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.98 Total: 11.61 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.83 Total: 2.22 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -6.49 Total: -122.42 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.02 kcal Total: -67.76 3.20 -64.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267063002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.120 kcal (2) G-P(sol) polarization free energy of solvation -67.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds