Wall clock time and date at job start Sun Mar 29 2020 23:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47115 * 2 1 4 4 C 1.46897 * 111.00197 * 163.65862 * 3 2 1 5 5 C 1.50698 * 109.46974 * 293.95211 * 4 3 2 6 6 H 1.07998 * 120.00422 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99751 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99747 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47237 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46958 * 120.00356 * 9 7 5 12 12 H 1.48500 * 109.47080 * 240.00245 * 9 7 5 13 13 C 1.46905 * 110.99883 * 287.61246 * 3 2 1 14 14 C 1.50696 * 109.47069 * 162.42360 * 13 3 2 15 15 N 1.30523 * 126.34789 * 95.16156 * 14 13 3 16 16 N 1.28594 * 109.67348 * 179.97438 * 15 14 13 17 17 C 1.30513 * 109.67693 * 0.02562 * 16 15 14 18 18 C 1.50694 * 126.34984 * 180.02562 * 17 16 15 19 19 N 1.35499 * 126.34732 * 274.84318 * 14 13 3 20 20 C 1.46490 * 126.97913 * 0.04280 * 19 14 13 21 21 C 1.53004 * 109.47206 * 87.24841 * 20 19 14 22 22 H 1.09001 * 109.47224 * 308.15226 * 1 2 3 23 23 H 1.09003 * 109.46875 * 68.15367 * 1 2 3 24 24 H 1.09004 * 109.47152 * 188.15135 * 1 2 3 25 25 H 1.08997 * 109.47282 * 239.99724 * 2 1 3 26 26 H 1.08999 * 109.46960 * 119.99741 * 2 1 3 27 27 H 1.09005 * 109.46985 * 53.95284 * 4 3 2 28 28 H 1.08997 * 109.47338 * 173.95023 * 4 3 2 29 29 H 0.96991 * 120.00083 * 179.97438 * 8 7 5 30 30 H 1.08993 * 109.47231 * 282.42558 * 13 3 2 31 31 H 1.09007 * 109.46927 * 42.42601 * 13 3 2 32 32 H 1.08998 * 109.47530 * 89.97042 * 18 17 16 33 33 H 1.09002 * 109.47324 * 209.96950 * 18 17 16 34 34 H 1.09002 * 109.47328 * 329.97205 * 18 17 16 35 35 H 1.09006 * 109.47432 * 207.24569 * 20 19 14 36 36 H 1.09005 * 109.47679 * 327.24714 * 20 19 14 37 37 H 1.09000 * 109.47455 * 65.10511 * 21 20 19 38 38 H 1.08997 * 109.47225 * 185.10476 * 21 20 19 39 39 H 1.08994 * 109.46893 * 305.10374 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4359 1.4427 0.3859 5 6 3.5832 1.0103 1.8220 6 1 2.7121 0.7212 2.3910 7 6 4.8305 0.9829 2.4091 8 7 5.8915 1.3346 1.7160 9 14 5.0131 0.4478 4.1895 10 1 3.6782 0.1059 4.7430 11 1 5.8975 -0.7431 4.2601 12 1 5.6088 1.5544 4.9804 13 6 1.8039 2.0196 -1.3072 14 6 1.9045 3.5161 -1.1617 15 7 2.9669 4.2443 -1.3736 16 7 2.6943 5.4818 -1.1546 17 6 1.4459 5.5994 -0.7926 18 6 0.7333 6.8812 -0.4463 19 7 0.9074 4.3560 -0.7926 20 6 -0.4717 3.9929 -0.4573 21 6 -0.5595 3.6410 1.0291 22 1 -0.3634 0.6348 0.8081 23 1 -0.3633 0.3824 -0.9539 24 1 -0.3634 -1.0173 0.1457 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.0145 0.7774 -0.2551 28 1 3.8016 2.4634 0.2743 29 1 6.7688 1.3156 2.1292 30 1 2.5609 1.6711 -2.0097 31 1 0.8139 1.7565 -1.6798 32 1 0.2873 7.3037 -1.3467 33 1 -0.0489 6.6761 0.2846 34 1 1.4459 7.5911 -0.0264 35 1 -1.1312 4.8341 -0.6711 36 1 -0.7760 3.1322 -1.0530 37 1 -0.3432 4.5272 1.6257 38 1 -1.5633 3.2842 1.2594 39 1 0.1655 2.8610 1.2612 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267118075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:42 Heat of formation + Delta-G solvation = 74.803582 kcal Electronic energy + Delta-G solvation = -19540.147106 eV Core-core repulsion = 16712.236186 eV Total energy + Delta-G solvation = -2827.910921 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.67009 -37.08862 -35.46678 -32.69850 -32.28537 -30.68714 -29.94670 -28.43975 -26.66251 -24.77144 -23.81886 -22.40266 -20.98090 -20.52208 -19.51396 -16.76997 -16.43482 -15.79170 -15.22088 -14.58159 -14.52190 -14.24535 -13.86143 -13.52896 -13.15149 -12.89919 -12.68000 -12.61262 -12.36483 -12.11507 -11.89536 -11.77783 -11.29019 -11.18628 -11.03442 -10.87291 -10.66884 -10.51465 -10.24583 -9.85807 -9.76064 -9.75010 -9.14034 -8.52696 -8.39165 -7.38609 -5.95971 -3.98332 2.20009 2.83315 3.32705 3.36874 3.40215 3.43482 4.44902 4.57952 4.63769 4.72411 4.99416 5.02668 5.14748 5.20034 5.35539 5.39321 5.45901 5.58503 5.62810 5.75589 5.78922 5.81336 5.89847 5.96372 6.20134 6.22398 6.37489 6.43261 6.59102 6.64578 6.70551 7.26090 7.35631 7.39865 7.79929 8.13713 8.17581 8.52307 9.08477 9.28323 9.64765 11.14529 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.007343 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.216239 B = 3812.131323 C = 4334.713266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 N -0.531 5.531 4 C 0.190 3.810 5 C -0.510 4.510 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.134 3.866 14 C 0.208 3.792 15 N -0.286 5.286 16 N -0.297 5.297 17 C 0.155 3.845 18 C -0.060 4.060 19 N -0.463 5.463 20 C 0.110 3.890 21 C -0.176 4.176 22 H 0.060 0.940 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.022 0.978 26 H 0.091 0.909 27 H -0.008 1.008 28 H 0.044 0.956 29 H 0.260 0.740 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.565 4.126 -4.618 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 N -0.257 5.257 4 C 0.065 3.935 5 C -0.548 4.548 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.003 3.997 14 C -0.060 4.060 15 N -0.126 5.126 16 N -0.138 5.138 17 C -0.112 4.112 18 C -0.119 4.119 19 N -0.155 5.155 20 C -0.013 4.013 21 C -0.234 4.234 22 H 0.079 0.921 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.109 0.891 27 H 0.010 0.990 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.223 4.777 -4.612 16.608 hybrid contribution -0.585 -1.043 0.786 1.431 sum -15.808 3.734 -3.826 16.687 Atomic orbital electron populations 1.21867 0.96744 1.00857 1.00938 1.21993 0.93875 0.89809 1.01587 1.62178 1.24484 1.16111 1.22954 1.19846 0.79950 0.98107 0.95624 1.21123 0.92785 1.44472 0.96466 0.92032 1.24987 0.95933 0.95680 0.97930 1.69988 0.98577 1.47965 1.36405 0.86508 0.78000 0.78160 0.85111 1.19798 1.21102 1.21095 1.20339 1.01337 0.84014 0.93994 1.24672 0.84540 0.95926 1.00879 1.74303 1.21605 0.96900 1.19768 1.74199 1.10493 1.11843 1.17225 1.24633 0.92801 0.88005 1.05771 1.20101 0.99596 0.90310 1.01923 1.46065 1.11794 1.06917 1.50737 1.21764 0.79140 1.01865 0.98546 1.22237 1.03658 1.03904 0.93556 0.92081 0.94077 0.93053 0.95933 0.89102 0.98971 0.93799 0.92978 0.91979 0.90438 0.90343 0.90876 0.89049 0.89505 0.89144 0.92427 0.91110 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.84 37.16 0.37 -1.58 16 2 C 0.06 0.98 5.53 -3.83 -0.02 0.96 16 3 N -0.53 -10.87 4.11 -237.52 -0.98 -11.84 16 4 C 0.19 5.02 4.56 -4.98 -0.02 5.00 16 5 C -0.51 -14.38 8.28 -34.44 -0.29 -14.67 16 6 H 0.06 1.69 7.26 -52.49 -0.38 1.31 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.13 2.41 5.13 -4.98 -0.03 2.38 16 14 C 0.21 4.04 6.83 -154.98 -1.06 2.98 16 15 N -0.29 -6.56 11.70 32.80 0.38 -6.18 16 16 N -0.30 -6.29 12.21 32.79 0.40 -5.89 16 17 C 0.15 2.57 8.03 -154.99 -1.24 1.33 16 18 C -0.06 -0.65 10.03 36.00 0.36 -0.29 16 19 N -0.46 -7.36 2.75 -110.66 -0.30 -7.67 16 20 C 0.11 1.21 6.42 -4.04 -0.03 1.18 16 21 C -0.18 -2.05 10.24 37.16 0.38 -1.67 16 22 H 0.06 0.83 7.89 -51.93 -0.41 0.42 16 23 H 0.04 0.48 6.84 -51.93 -0.36 0.12 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 26 H 0.09 1.82 6.58 -51.93 -0.34 1.48 16 27 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 28 H 0.04 1.32 6.93 -51.93 -0.36 0.96 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 31 H 0.08 1.11 5.70 -51.93 -0.30 0.81 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.63 7.80 -51.93 -0.41 0.22 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 36 H 0.09 0.88 7.38 -51.93 -0.38 0.49 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.48 7.61 -51.93 -0.40 1.08 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -34.75 320.16 -7.86 -42.61 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -6.23 Total: -3.30 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.67 Total: -2.83 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.24 Total: -58.30 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.75 -7.86 -42.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267118075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.418 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds