Wall clock time and date at job start Sun Mar 29 2020 23:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47115 * 2 1 4 4 C 1.46897 * 111.00197 * 163.65862 * 3 2 1 5 5 C 1.50698 * 109.46974 * 293.95211 * 4 3 2 6 6 H 1.07998 * 120.00422 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99751 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99747 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47237 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46958 * 120.00356 * 9 7 5 12 12 H 1.48500 * 109.47080 * 240.00245 * 9 7 5 13 13 C 1.46905 * 110.99883 * 287.61246 * 3 2 1 14 14 C 1.50696 * 109.47069 * 162.42360 * 13 3 2 15 15 N 1.30523 * 126.34789 * 95.16156 * 14 13 3 16 16 N 1.28594 * 109.67348 * 179.97438 * 15 14 13 17 17 C 1.30513 * 109.67693 * 0.02562 * 16 15 14 18 18 C 1.50694 * 126.34984 * 180.02562 * 17 16 15 19 19 N 1.35499 * 126.34732 * 274.84318 * 14 13 3 20 20 C 1.46490 * 126.97913 * 0.04280 * 19 14 13 21 21 C 1.53004 * 109.47206 * 87.24841 * 20 19 14 22 22 H 1.09001 * 109.47224 * 308.15226 * 1 2 3 23 23 H 1.09003 * 109.46875 * 68.15367 * 1 2 3 24 24 H 1.09004 * 109.47152 * 188.15135 * 1 2 3 25 25 H 1.08997 * 109.47282 * 239.99724 * 2 1 3 26 26 H 1.08999 * 109.46960 * 119.99741 * 2 1 3 27 27 H 1.09005 * 109.46985 * 53.95284 * 4 3 2 28 28 H 1.08997 * 109.47338 * 173.95023 * 4 3 2 29 29 H 0.96991 * 120.00083 * 179.97438 * 8 7 5 30 30 H 1.08993 * 109.47231 * 282.42558 * 13 3 2 31 31 H 1.09007 * 109.46927 * 42.42601 * 13 3 2 32 32 H 1.08998 * 109.47530 * 89.97042 * 18 17 16 33 33 H 1.09002 * 109.47324 * 209.96950 * 18 17 16 34 34 H 1.09002 * 109.47328 * 329.97205 * 18 17 16 35 35 H 1.09006 * 109.47432 * 207.24569 * 20 19 14 36 36 H 1.09005 * 109.47679 * 327.24714 * 20 19 14 37 37 H 1.09000 * 109.47455 * 65.10511 * 21 20 19 38 38 H 1.08997 * 109.47225 * 185.10476 * 21 20 19 39 39 H 1.08994 * 109.46893 * 305.10374 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4359 1.4427 0.3859 5 6 3.5832 1.0103 1.8220 6 1 2.7121 0.7212 2.3910 7 6 4.8305 0.9829 2.4091 8 7 5.8915 1.3346 1.7160 9 14 5.0131 0.4478 4.1895 10 1 3.6782 0.1059 4.7430 11 1 5.8975 -0.7431 4.2601 12 1 5.6088 1.5544 4.9804 13 6 1.8039 2.0196 -1.3072 14 6 1.9045 3.5161 -1.1617 15 7 2.9669 4.2443 -1.3736 16 7 2.6943 5.4818 -1.1546 17 6 1.4459 5.5994 -0.7926 18 6 0.7333 6.8812 -0.4463 19 7 0.9074 4.3560 -0.7926 20 6 -0.4717 3.9929 -0.4573 21 6 -0.5595 3.6410 1.0291 22 1 -0.3634 0.6348 0.8081 23 1 -0.3633 0.3824 -0.9539 24 1 -0.3634 -1.0173 0.1457 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.0145 0.7774 -0.2551 28 1 3.8016 2.4634 0.2743 29 1 6.7688 1.3156 2.1292 30 1 2.5609 1.6711 -2.0097 31 1 0.8139 1.7565 -1.6798 32 1 0.2873 7.3037 -1.3467 33 1 -0.0489 6.6761 0.2846 34 1 1.4459 7.5911 -0.0264 35 1 -1.1312 4.8341 -0.6711 36 1 -0.7760 3.1322 -1.0530 37 1 -0.3432 4.5272 1.6257 38 1 -1.5633 3.2842 1.2594 39 1 0.1655 2.8610 1.2612 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267118075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:41 Heat of formation + Delta-G solvation = 51.010305 kcal Electronic energy + Delta-G solvation = -19541.178860 eV Core-core repulsion = 16712.236186 eV Total energy + Delta-G solvation = -2828.942675 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.03274 -38.72429 -36.64163 -34.82053 -33.58485 -31.86910 -31.25338 -30.00656 -28.22481 -26.44090 -24.86757 -24.20258 -22.42279 -21.82438 -20.95757 -18.58062 -17.96889 -17.18014 -16.86714 -16.24928 -15.86414 -15.71190 -15.26227 -14.81338 -14.29784 -14.06097 -14.02226 -13.88774 -13.61600 -13.48184 -13.43073 -12.91959 -12.86863 -12.63549 -12.54020 -12.36048 -12.25679 -12.10900 -11.82114 -11.63428 -11.26478 -11.15027 -10.97555 -10.63445 -9.97307 -9.12795 -8.19960 -6.31076 0.88918 1.36614 1.38188 1.51098 1.67998 1.91879 2.37935 3.12176 3.21715 3.52741 3.62741 3.77902 3.94049 4.15928 4.23770 4.30030 4.36555 4.45032 4.57031 4.70283 4.75869 4.78743 4.83107 4.94105 5.02129 5.06893 5.12719 5.16403 5.22241 5.34724 5.40559 5.43219 5.54674 5.63524 6.04261 6.12118 6.30335 6.53423 6.86382 7.38085 7.86541 8.91646 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.007343 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.216239 B = 3812.131323 C = 4334.713266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.051 3.949 3 N -0.525 5.525 4 C 0.210 3.790 5 C -0.517 4.517 6 H 0.068 0.932 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.970 3.030 10 H -0.256 1.256 11 H -0.277 1.277 12 H -0.285 1.285 13 C 0.139 3.861 14 C 0.195 3.805 15 N -0.348 5.348 16 N -0.355 5.355 17 C 0.170 3.830 18 C -0.059 4.059 19 N -0.457 5.457 20 C 0.100 3.900 21 C -0.171 4.171 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.063 0.937 27 H -0.045 1.045 28 H 0.001 0.999 29 H 0.262 0.738 30 H 0.043 0.957 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.571 4.133 -3.734 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.076 4.076 3 N -0.250 5.250 4 C 0.084 3.916 5 C -0.556 4.556 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.576 5.576 9 Si 0.794 3.206 10 H -0.180 1.180 11 H -0.202 1.202 12 H -0.211 1.211 13 C 0.008 3.992 14 C -0.075 4.075 15 N -0.188 5.188 16 N -0.196 5.196 17 C -0.099 4.099 18 C -0.117 4.117 19 N -0.148 5.148 20 C -0.020 4.020 21 C -0.228 4.228 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.043 0.957 26 H 0.081 0.919 27 H -0.027 1.027 28 H 0.019 0.981 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.124 0.876 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.281 4.772 -3.731 20.210 hybrid contribution 0.580 -1.005 0.473 1.253 sum -18.701 3.767 -3.258 19.353 Atomic orbital electron populations 1.21760 0.92308 1.02549 1.02398 1.22097 0.97372 0.87762 1.00375 1.62071 1.20113 1.18082 1.24757 1.19345 0.83220 0.94366 0.94683 1.21466 0.93064 1.43802 0.97242 0.91397 1.26008 0.95549 0.95660 1.03007 1.70158 0.99210 1.49516 1.38748 0.85327 0.78683 0.77698 0.78858 1.18010 1.20234 1.21073 1.20415 1.03175 0.83363 0.92221 1.24748 0.85062 0.96474 1.01228 1.74154 1.24268 0.98278 1.22064 1.74059 1.13577 1.11568 1.20347 1.25678 0.91816 0.89963 1.02448 1.20410 0.99875 0.87343 1.04118 1.46337 1.12938 1.05946 1.49588 1.22279 0.76877 1.04574 0.98313 1.22184 1.04381 1.02339 0.93935 0.91975 0.91562 0.90888 0.95723 0.91873 1.02713 0.98125 0.92950 0.93895 0.85740 0.87308 0.87839 0.89139 0.85244 0.87203 0.92984 0.87597 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.84 71.98 0.71 -2.37 16 2 C 0.05 1.80 5.53 86.31 0.48 2.28 16 3 N -0.52 -21.85 4.11 -905.38 -3.72 -25.57 16 4 C 0.21 11.81 4.56 85.56 0.39 12.20 16 5 C -0.52 -30.15 8.28 25.60 0.21 -29.94 16 6 H 0.07 3.78 7.26 -2.91 -0.02 3.76 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 8 N -0.94 -60.31 13.29 21.45 0.28 -60.03 16 9 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 C 0.14 5.01 5.13 85.55 0.44 5.45 16 14 C 0.19 7.72 6.83 137.97 0.94 8.66 16 15 N -0.35 -16.91 11.70 -50.15 -0.59 -17.50 16 16 N -0.36 -15.65 12.21 -50.16 -0.61 -16.26 16 17 C 0.17 5.47 8.03 137.98 1.11 6.58 16 18 C -0.06 -1.08 10.03 71.23 0.71 -0.36 16 19 N -0.46 -13.82 2.75 -504.03 -1.38 -15.20 16 20 C 0.10 1.78 6.42 86.38 0.55 2.34 16 21 C -0.17 -3.40 10.24 71.98 0.74 -2.67 16 22 H 0.06 1.46 7.89 -2.39 -0.02 1.44 16 23 H 0.07 1.22 6.84 -2.39 -0.02 1.20 16 24 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.02 0.84 8.05 -2.39 -0.02 0.82 16 26 H 0.06 2.55 6.58 -2.39 -0.02 2.53 16 27 H -0.04 -2.78 8.12 -2.38 -0.02 -2.79 16 28 H 0.00 0.04 6.93 -2.39 -0.02 0.02 16 29 H 0.26 15.87 8.31 -92.72 -0.77 15.10 16 30 H 0.04 1.71 8.03 -2.39 -0.02 1.69 16 31 H 0.12 3.23 5.70 -2.38 -0.01 3.22 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.30 7.80 -2.39 -0.02 1.28 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.13 1.28 7.69 -2.38 -0.02 1.26 16 36 H 0.11 1.57 7.38 -2.38 -0.02 1.55 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.54 7.61 -2.39 -0.02 1.52 16 Total: -1.00 -83.82 320.16 3.77 -80.05 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.02 Total: 4.23 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 6.74 Total: 2.35 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -6.02 Total: -134.56 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -83.82 3.77 -80.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267118075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.056 kcal (2) G-P(sol) polarization free energy of solvation -83.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds