Wall clock time and date at job start Sun Mar 29 2020 23:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47291 * 240.00232 * 2 1 3 5 5 N 1.46499 * 109.47409 * 120.00086 * 2 1 3 6 6 C 1.35308 * 125.86944 * 74.99592 * 5 2 1 7 7 C 1.35347 * 106.17713 * 180.02562 * 6 5 2 8 8 C 1.50700 * 126.75515 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.46939 * 94.99857 * 8 7 6 10 10 C 1.46900 * 110.99798 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47113 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47166 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99738 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99869 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00325 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00004 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47147 * 59.99923 * 16 14 12 18 18 H 1.48497 * 109.47237 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46808 * 299.99956 * 16 14 12 20 20 N 1.33774 * 106.49812 * 0.02562 * 7 6 5 21 21 N 1.28637 * 108.88333 * 0.02562 * 20 7 6 22 22 H 1.09007 * 109.47087 * 299.99880 * 1 2 3 23 23 H 1.08997 * 109.47186 * 59.99928 * 1 2 3 24 24 H 1.08995 * 109.46937 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47007 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47201 * 300.00062 * 3 2 1 27 27 H 1.09004 * 109.47317 * 59.99668 * 3 2 1 28 28 H 1.09004 * 109.47015 * 299.99746 * 4 2 1 29 29 H 1.08997 * 109.47137 * 59.99809 * 4 2 1 30 30 H 1.08994 * 109.47145 * 180.02562 * 4 2 1 31 31 H 1.07997 * 126.91159 * 0.02959 * 6 5 2 32 32 H 1.09000 * 109.47363 * 214.99779 * 8 7 6 33 33 H 1.09004 * 109.47108 * 335.00124 * 8 7 6 34 34 H 1.00896 * 111.00288 * 56.05107 * 9 8 7 35 35 H 1.08998 * 109.47303 * 299.99909 * 10 9 8 36 36 H 1.09001 * 109.47373 * 59.99946 * 10 9 8 37 37 H 1.09002 * 109.46808 * 299.99517 * 11 10 9 38 38 H 1.09001 * 109.47194 * 59.99653 * 11 10 9 39 39 H 0.96992 * 120.00489 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0151 -2.0289 1.3958 7 6 2.5507 -2.2284 2.6227 8 6 2.7664 -3.5531 3.3080 9 7 4.1400 -4.0130 3.0634 10 6 4.3868 -5.3050 3.7175 11 6 5.8244 -5.7500 3.4413 12 6 6.0779 -7.0751 4.1128 13 1 5.2923 -7.5519 4.6801 14 6 7.3126 -7.6787 4.0028 15 7 8.2691 -7.0982 3.3116 16 14 7.6271 -9.3209 4.8357 17 1 6.6831 -10.3354 4.3020 18 1 9.0223 -9.7528 4.5676 19 1 7.4259 -9.1796 6.3002 20 7 2.8510 -1.0183 3.1075 21 7 2.5226 -0.1284 2.2385 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6767 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7216 -1.2490 31 1 1.6571 -2.7856 0.7135 32 1 2.6073 -3.4378 4.3801 33 1 2.0623 -4.2854 2.9129 34 1 4.8114 -3.3218 3.3626 35 1 4.2389 -5.2022 4.7924 36 1 3.6939 -6.0493 3.3249 37 1 5.9728 -5.8527 2.3663 38 1 6.5170 -5.0056 3.8342 39 1 9.1376 -7.5230 3.2339 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276675840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:45 Heat of formation + Delta-G solvation = 81.803341 kcal Electronic energy + Delta-G solvation = -18059.169711 eV Core-core repulsion = 15231.562322 eV Total energy + Delta-G solvation = -2827.607388 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.23909 -37.72523 -35.97105 -33.14731 -31.89880 -31.41382 -29.19396 -27.96651 -27.80504 -25.51119 -23.69828 -23.29110 -21.22118 -20.47918 -19.67177 -17.19094 -16.44744 -16.20755 -15.36959 -14.85754 -14.60227 -14.46381 -14.36890 -13.92632 -13.64995 -13.00349 -12.88142 -12.73074 -12.46771 -12.26688 -12.24625 -12.04239 -11.76030 -11.61928 -11.25065 -11.01935 -10.87764 -10.69350 -10.52833 -10.02556 -9.93578 -9.43253 -9.18485 -8.98566 -8.31082 -7.77229 -5.95565 -3.98249 1.67813 2.22941 2.65023 3.36457 3.40580 3.43031 3.96073 4.20582 4.31251 4.42890 4.49287 4.87487 4.97626 4.98062 5.13412 5.14697 5.15202 5.19411 5.28449 5.30144 5.40161 5.50555 5.56151 5.66676 5.73382 5.86361 6.09172 6.27837 6.37694 6.46692 6.66834 7.02178 7.50850 7.78270 7.85775 7.99688 8.13014 8.47604 8.63544 9.09009 9.65212 11.15904 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.046324 B = 0.003259 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.296109 B = 8590.472562 C = 8730.965514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.286 5.286 6 C -0.034 4.034 7 C -0.009 4.009 8 C 0.143 3.857 9 N -0.688 5.688 10 C 0.066 3.934 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.268 5.268 21 N -0.089 5.089 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.186 0.814 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.341 0.659 35 H 0.018 0.982 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.014 0.986 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.106 14.862 -9.987 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.081 3.919 3 C -0.206 4.206 4 C -0.219 4.219 5 N -0.081 5.081 6 C -0.185 4.185 7 C -0.147 4.147 8 C 0.011 3.989 9 N -0.319 5.319 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 N -0.135 5.135 21 N -0.068 5.068 22 H 0.086 0.914 23 H 0.102 0.898 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.203 0.797 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.032 0.968 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.690 15.914 -10.000 25.135 hybrid contribution 0.005 -1.657 0.694 1.796 sum -16.685 14.257 -9.306 23.838 Atomic orbital electron populations 1.22244 0.91990 1.03622 1.03821 1.21114 0.95239 0.94066 0.81448 1.21994 1.02719 0.92318 1.03619 1.22254 1.02916 1.01252 0.95463 1.47585 1.40425 1.05674 1.14430 1.23223 1.08719 0.86299 1.00290 1.21998 1.03231 0.95390 0.94090 1.20100 0.93292 0.88507 0.96954 1.60647 1.01800 1.06340 1.63142 1.22181 1.01287 0.88208 0.94534 1.19063 0.88759 0.95628 0.97758 1.21148 0.97484 1.05163 1.32259 0.92745 1.25006 0.96227 0.97705 0.95444 1.69964 1.03624 1.38904 1.40806 0.86643 0.77158 0.84136 0.79957 1.20233 1.21307 1.20278 1.75062 1.18024 0.98320 1.22118 1.78209 1.14195 1.22291 0.92105 0.91382 0.89779 0.91347 0.91143 0.90305 0.90665 0.91043 0.89658 0.91000 0.79699 0.93923 0.89796 0.84121 0.96392 0.92199 0.95685 0.96755 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.73 37.16 0.32 -0.60 16 2 C 0.16 1.28 1.23 -131.82 -0.16 1.11 16 3 C -0.15 -1.07 8.05 37.16 0.30 -0.77 16 4 C -0.16 -1.01 8.29 37.16 0.31 -0.70 16 5 N -0.29 -3.41 3.18 -48.55 -0.15 -3.57 16 6 C -0.03 -0.43 10.63 -17.05 -0.18 -0.61 16 7 C -0.01 -0.14 6.76 -82.78 -0.56 -0.70 16 8 C 0.14 2.23 6.25 -4.98 -0.03 2.20 16 9 N -0.69 -13.03 6.49 -115.05 -0.75 -13.78 16 10 C 0.07 1.42 5.62 -3.82 -0.02 1.40 16 11 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 12 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 N -0.27 -4.60 12.41 33.29 0.41 -4.19 16 21 N -0.09 -1.36 12.18 60.35 0.74 -0.63 16 22 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 23 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 28 H 0.07 0.42 7.39 -51.93 -0.38 0.04 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.19 1.72 7.59 -52.49 -0.40 1.32 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.34 6.72 8.72 -39.29 -0.34 6.38 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -33.43 327.39 -6.26 -39.69 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.58 Total: -0.79 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.58 Total: -11.91 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.98 Total: -48.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.43 -6.26 -39.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276675840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.494 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds