Wall clock time and date at job start Sun Mar 29 2020 23:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47162 * 2 1 4 4 C 1.36942 * 119.99661 * 275.05094 * 3 2 1 5 5 H 1.07994 * 120.00029 * 37.16788 * 4 3 2 6 6 C 1.38805 * 119.99871 * 217.17515 * 4 3 2 7 7 N 1.31620 * 120.00183 * 22.72365 * 6 4 3 8 8 Si 1.86804 * 119.99950 * 202.73249 * 6 4 3 9 9 H 1.48502 * 109.46871 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47421 * 119.99778 * 8 6 4 11 11 H 1.48501 * 109.47035 * 239.99791 * 8 6 4 12 12 C 1.46493 * 120.00391 * 95.05161 * 3 2 1 13 13 C 1.50706 * 109.46933 * 269.99923 * 12 3 2 14 14 C 1.35352 * 126.75123 * 94.99778 * 13 12 3 15 15 N 1.35315 * 106.17562 * 180.02562 * 14 13 12 16 16 C 1.46501 * 125.86852 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47014 * 74.99920 * 16 15 14 18 18 C 1.52997 * 109.47025 * 194.99916 * 16 15 14 19 19 C 1.52995 * 109.46829 * 314.99907 * 16 15 14 20 20 N 1.28718 * 108.26039 * 0.02562 * 15 14 13 21 21 N 1.28632 * 110.18198 * 359.97438 * 20 15 14 22 22 H 1.09004 * 109.46921 * 300.00009 * 1 2 3 23 23 H 1.08997 * 109.47129 * 60.00494 * 1 2 3 24 24 H 1.09007 * 109.46832 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47183 * 239.99128 * 2 1 3 26 26 H 1.09001 * 109.46652 * 119.99538 * 2 1 3 27 27 H 0.97000 * 119.99924 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47635 * 150.00139 * 12 3 2 29 29 H 1.09001 * 109.47396 * 29.99722 * 12 3 2 30 30 H 1.08000 * 126.91297 * 0.02784 * 14 13 12 31 31 H 1.08991 * 109.47371 * 60.00198 * 17 16 15 32 32 H 1.09001 * 109.46719 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47033 * 299.99626 * 17 16 15 34 34 H 1.09007 * 109.46857 * 59.99782 * 18 16 15 35 35 H 1.09001 * 109.46935 * 179.97438 * 18 16 15 36 36 H 1.08997 * 109.47068 * 300.00125 * 18 16 15 37 37 H 1.09006 * 109.47739 * 60.00050 * 19 16 15 38 38 H 1.09001 * 109.47214 * 180.02562 * 19 16 15 39 39 H 1.09005 * 109.47622 * 299.99988 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1482 2.0615 -1.1814 5 1 1.4226 1.9198 -1.9686 6 6 3.2124 2.9331 -1.3670 7 7 4.3089 2.7946 -0.6523 8 14 3.0882 4.3029 -2.6311 9 1 1.7623 4.2430 -3.2972 10 1 3.2443 5.6159 -1.9552 11 1 4.1596 4.1383 -3.6462 12 6 2.3679 2.0346 1.2637 13 6 1.1533 2.7305 1.8221 14 6 0.2844 2.2358 2.7344 15 7 -0.6420 3.2014 2.9349 16 6 -1.7872 3.1166 3.8446 17 6 -1.3047 3.2746 5.2880 18 6 -2.7837 4.2299 3.5153 19 6 -2.4691 1.7569 3.6807 20 7 -0.3442 4.2072 2.1889 21 7 0.7214 3.9582 1.5129 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 5.0527 3.4035 -0.7824 28 1 3.1571 2.7658 1.0887 29 1 2.7172 1.2864 1.9752 30 1 0.3229 1.2655 3.2072 31 1 -0.8190 4.2432 5.4048 32 1 -2.1568 3.2110 5.9648 33 1 -0.5949 2.4814 5.5226 34 1 -3.1274 4.1173 2.4869 35 1 -3.6360 4.1665 4.1918 36 1 -2.2979 5.1986 3.6320 37 1 -1.7592 0.9636 3.9153 38 1 -3.3214 1.6939 4.3572 39 1 -2.8128 1.6443 2.6524 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276695658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:18 Heat of formation + Delta-G solvation = 111.871931 kcal Electronic energy + Delta-G solvation = -19555.368527 eV Core-core repulsion = 16729.065011 eV Total energy + Delta-G solvation = -2826.303517 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.52931 -37.28600 -35.82768 -31.77220 -31.50249 -30.83084 -28.83408 -27.68113 -27.56581 -25.57999 -23.51129 -23.05974 -20.88300 -20.20638 -19.10647 -16.87793 -16.47689 -15.74726 -14.82091 -14.34228 -14.22222 -13.97731 -13.67149 -13.58446 -13.26188 -12.69874 -12.60786 -12.41914 -12.32419 -11.99852 -11.77385 -11.47546 -11.44723 -11.14840 -11.06787 -10.76805 -10.63113 -10.43122 -10.24154 -9.94475 -9.83472 -9.62224 -9.28695 -8.37849 -8.24428 -6.52143 -5.69934 -3.24742 2.30266 2.78123 3.47155 3.53184 3.59972 3.63138 4.31654 4.53524 4.63140 4.64178 5.06846 5.22196 5.28726 5.41120 5.44120 5.46964 5.53081 5.57675 5.67254 5.73634 5.79165 5.93292 5.99580 6.05822 6.11109 6.34801 6.41160 6.42484 6.62524 6.92169 6.93779 7.08559 7.22284 7.30087 7.68276 7.94987 8.62075 9.27648 9.40727 9.91790 10.47286 11.32197 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025660 B = 0.006905 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.937602 B = 4054.349449 C = 4517.435471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.143 3.857 3 N -0.572 5.572 4 C -0.254 4.254 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.293 1.293 12 C 0.216 3.784 13 C 0.005 3.995 14 C -0.074 4.074 15 N -0.293 5.293 16 C 0.166 3.834 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.157 4.157 20 N -0.108 5.108 21 N -0.253 5.253 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.254 0.746 28 H 0.109 0.891 29 H 0.043 0.957 30 H 0.172 0.828 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 -3.205 12.468 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 N -0.292 5.292 4 C -0.384 4.384 5 H 0.074 0.926 6 C -0.178 4.178 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.220 1.220 12 C 0.087 3.913 13 C -0.135 4.135 14 C -0.225 4.225 15 N -0.090 5.090 16 C 0.083 3.917 17 C -0.215 4.215 18 C -0.204 4.204 19 C -0.215 4.215 20 N -0.086 5.086 21 N -0.120 5.120 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.189 0.811 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.398 -1.707 12.003 17.341 hybrid contribution -0.056 -0.372 -0.163 0.410 sum -12.454 -2.078 11.840 17.310 Atomic orbital electron populations 1.22352 1.00406 0.98622 1.01222 1.20850 0.91495 0.87137 0.98850 1.43683 1.75671 1.07866 1.01961 1.18888 1.04888 1.21317 0.93265 0.92618 1.25049 0.94044 1.00714 0.98025 1.69994 1.03048 1.36888 1.42928 0.86347 0.77345 0.82994 0.80731 1.20251 1.21117 1.21986 1.19384 0.90461 0.95720 0.85755 1.23860 1.01809 0.92024 0.95839 1.23156 0.94512 0.97686 1.07114 1.47462 1.20055 1.11674 1.29778 1.20915 0.84030 0.98181 0.88584 1.22213 1.02362 1.03449 0.93464 1.21951 0.97640 0.97982 1.02813 1.22207 1.01107 0.94657 1.03575 1.78189 1.13106 1.12010 1.05340 1.75137 1.03896 1.15669 1.17277 0.93924 0.93445 0.94713 0.93531 0.94754 0.93604 0.87320 0.93881 0.81084 0.91469 0.90317 0.91533 0.91395 0.90827 0.90744 0.91327 0.90172 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.21 37.16 0.38 -2.75 16 2 C 0.14 3.03 6.44 -4.04 -0.03 3.00 16 3 N -0.57 -14.46 2.42 -174.61 -0.42 -14.88 16 4 C -0.25 -7.20 9.45 -15.06 -0.14 -7.35 16 5 H 0.06 1.62 7.93 -52.49 -0.42 1.20 16 6 C 0.02 0.64 4.92 -17.43 -0.09 0.55 16 7 N -0.89 -26.07 11.53 55.49 0.64 -25.43 16 8 Si 0.90 23.15 29.61 -169.99 -5.03 18.11 16 9 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 10 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 C 0.22 5.19 5.90 -5.19 -0.03 5.16 16 13 C 0.01 0.12 6.71 -82.77 -0.56 -0.44 16 14 C -0.07 -1.32 9.39 -17.04 -0.16 -1.48 16 15 N -0.29 -4.90 3.18 -48.55 -0.15 -5.06 16 16 C 0.17 1.92 1.23 -131.82 -0.16 1.76 16 17 C -0.16 -1.46 8.73 37.16 0.32 -1.14 16 18 C -0.15 -1.56 8.05 37.16 0.30 -1.27 16 19 C -0.16 -1.48 8.29 37.16 0.31 -1.17 16 20 N -0.11 -2.26 12.18 60.35 0.74 -1.52 16 21 N -0.25 -6.16 12.41 33.29 0.41 -5.75 16 22 H 0.04 0.79 6.72 -51.93 -0.35 0.44 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 26 H 0.03 0.65 7.84 -51.93 -0.41 0.25 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.11 3.02 5.54 -51.93 -0.29 2.73 16 29 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 30 H 0.17 2.45 7.59 -52.49 -0.40 2.05 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 37 H 0.07 0.62 7.39 -51.93 -0.38 0.24 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -32.86 320.51 -5.27 -38.13 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.43 Total: -3.31 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 0.15 Total: -5.11 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 1.21 Total: -52.65 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.03 Total: 18.11 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.86 -5.27 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276695658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.000 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds