Wall clock time and date at job start Sun Mar 29 2020 23:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46932 * 2 1 4 4 N 1.46495 * 109.47247 * 180.02562 * 3 2 1 5 5 C 1.36934 * 120.00304 * 89.99493 * 4 3 2 6 6 H 1.07999 * 119.99789 * 35.16236 * 5 4 3 7 7 C 1.38809 * 120.00278 * 215.42789 * 5 4 3 8 8 N 1.31622 * 119.99872 * 21.27377 * 7 5 4 9 9 Si 1.86796 * 120.00362 * 201.26690 * 7 5 4 10 10 H 1.48509 * 109.47041 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47302 * 120.00150 * 9 7 5 12 12 H 1.48496 * 109.47542 * 240.00588 * 9 7 5 13 13 C 1.46510 * 119.99568 * 270.00228 * 4 3 2 14 14 C 1.50693 * 109.46702 * 273.37360 * 13 4 3 15 15 C 1.35352 * 126.74926 * 94.71641 * 14 13 4 16 16 N 1.35322 * 106.17464 * 179.84946 * 15 14 13 17 17 C 1.46493 * 125.86863 * 180.18790 * 16 15 14 18 18 C 1.53010 * 109.47045 * 275.29366 * 17 16 15 19 19 C 1.52997 * 109.47335 * 35.29221 * 17 16 15 20 20 N 1.28721 * 108.26114 * 0.41761 * 16 15 14 21 21 N 1.28639 * 110.17910 * 359.73402 * 20 16 15 22 22 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47069 * 299.99584 * 1 2 3 24 24 H 1.08995 * 109.47667 * 59.99960 * 1 2 3 25 25 H 1.08998 * 109.47149 * 240.00826 * 2 1 3 26 26 H 1.08995 * 109.47667 * 120.00040 * 2 1 3 27 27 H 1.09003 * 109.46823 * 59.99774 * 3 2 1 28 28 H 1.09003 * 109.46717 * 300.00676 * 3 2 1 29 29 H 0.96998 * 120.00134 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47003 * 33.37631 * 13 4 3 31 31 H 1.08998 * 109.46720 * 153.37611 * 13 4 3 32 32 H 1.07995 * 126.91739 * 359.97438 * 15 14 13 33 33 H 1.09002 * 109.47038 * 155.29498 * 17 16 15 34 34 H 1.09000 * 109.46941 * 300.00466 * 18 17 16 35 35 H 1.08995 * 109.46725 * 60.00238 * 18 17 16 36 36 H 1.08994 * 109.46995 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.46897 * 60.00303 * 19 17 16 38 38 H 1.09003 * 109.47145 * 179.97438 * 19 17 16 39 39 H 1.09002 * 109.47284 * 300.00127 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4427 -0.0006 5 6 4.1892 1.4428 -1.1868 6 1 3.7966 1.9815 -2.0365 7 6 5.3845 0.7461 -1.2986 8 7 5.6588 -0.2292 -0.4584 9 14 6.6037 1.1924 -2.6416 10 1 6.0625 2.3158 -3.4481 11 1 7.8914 1.6015 -2.0252 12 1 6.8268 0.0152 -3.5189 13 6 4.2379 1.4425 1.2679 14 6 4.4167 2.8607 1.7449 15 6 3.6222 3.5295 2.6129 16 7 4.1649 4.7617 2.7482 17 6 3.6476 5.8391 3.5953 18 6 2.5648 6.6092 2.8366 19 6 3.0500 5.2426 4.8712 20 7 5.2111 4.8259 2.0010 21 7 5.3887 3.7083 1.3893 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9564 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 6.4940 -0.7164 -0.5367 30 1 3.6767 0.8770 2.0117 31 1 5.2152 0.9820 1.1228 32 1 2.7348 3.1545 3.1010 33 1 4.4599 6.5173 3.8571 34 1 2.9905 7.0341 1.9276 35 1 1.7526 5.9310 2.5749 36 1 2.1796 7.4106 3.4670 37 1 3.8214 4.6941 5.4117 38 1 2.6656 6.0444 5.5017 39 1 2.2378 4.5645 4.6094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289110270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:01 Heat of formation + Delta-G solvation = 106.142607 kcal Electronic energy + Delta-G solvation = -19157.655849 eV Core-core repulsion = 16331.103890 eV Total energy + Delta-G solvation = -2826.551959 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.50514 -36.49481 -35.88020 -32.88523 -31.53369 -30.72230 -29.91178 -27.60654 -26.08226 -25.42741 -23.41297 -22.17695 -20.77013 -20.31132 -19.57521 -17.02774 -16.44994 -15.72888 -14.82282 -14.61798 -14.23931 -14.15607 -13.80248 -13.40330 -13.13592 -12.95145 -12.78222 -12.53381 -12.29697 -11.68871 -11.65802 -11.36053 -11.29529 -10.91558 -10.89284 -10.65206 -10.51000 -10.40512 -10.08792 -9.91278 -9.68821 -9.60888 -9.32678 -8.41505 -8.33162 -6.56147 -5.70806 -3.23219 2.25945 2.80222 3.44119 3.51212 3.58904 3.61652 4.35543 4.63190 4.63550 4.80383 5.04945 5.21870 5.41227 5.41473 5.45097 5.50448 5.57789 5.73417 5.76757 5.79105 5.87641 5.90716 6.09682 6.17165 6.30069 6.31477 6.53619 6.62767 6.71214 6.95512 7.08372 7.11430 7.24057 7.31505 7.72415 7.92570 8.60169 9.26232 9.35793 9.90700 10.44895 11.32414 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.007551 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.792796 B = 3707.015367 C = 4816.347456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.150 3.850 4 N -0.573 5.573 5 C -0.251 4.251 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.888 5.888 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.293 1.293 13 C 0.215 3.785 14 C 0.002 3.998 15 C -0.074 4.074 16 N -0.298 5.298 17 C 0.141 3.859 18 C -0.163 4.163 19 C -0.162 4.162 20 N -0.112 5.112 21 N -0.251 5.251 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.116 0.884 32 H 0.174 0.826 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.980 8.481 10.535 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.024 3.976 4 N -0.292 5.292 5 C -0.381 4.381 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.220 1.220 13 C 0.086 3.914 14 C -0.138 4.138 15 C -0.225 4.225 16 N -0.094 5.094 17 C 0.038 3.962 18 C -0.222 4.222 19 C -0.221 4.221 20 N -0.090 5.090 21 N -0.118 5.118 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.191 0.809 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.671 9.267 10.038 15.668 hybrid contribution -0.366 -0.268 -0.178 0.487 sum -8.037 8.999 9.860 15.582 Atomic orbital electron populations 1.21758 0.97904 1.00274 1.00557 1.22086 0.92860 1.00791 1.02249 1.20904 0.85274 0.93424 0.97974 1.43742 0.99237 1.84296 1.01921 1.18992 1.04140 1.24741 0.90214 0.92385 1.25023 1.00341 0.94860 0.97972 1.69938 1.24292 1.19785 1.39106 0.86316 0.81894 0.77679 0.81366 1.20270 1.21186 1.21976 1.19401 1.01536 0.84353 0.86131 1.23925 0.92125 1.01714 0.96066 1.23240 1.04408 0.86825 1.07992 1.47438 1.19424 1.11186 1.31394 1.21467 0.97786 0.87300 0.89608 1.22201 0.98229 1.00502 1.01223 1.22169 1.01964 1.02244 0.95676 1.78226 1.04439 1.20022 1.06315 1.75128 1.22393 0.96450 1.17830 0.93879 0.93808 0.93490 0.91736 0.92952 0.95223 0.94202 0.93605 0.94005 0.86656 0.80865 0.87602 0.91414 0.91553 0.90350 0.91361 0.90050 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.14 -2.70 6.26 -26.72 -0.17 -2.87 16 3 C 0.15 3.15 5.68 -4.04 -0.02 3.13 16 4 N -0.57 -14.35 2.43 -174.60 -0.42 -14.77 16 5 C -0.25 -7.05 9.48 -15.06 -0.14 -7.20 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.02 0.51 4.95 -17.43 -0.09 0.42 16 8 N -0.89 -25.83 11.35 55.49 0.63 -25.20 16 9 Si 0.90 22.95 29.60 -169.99 -5.03 17.92 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 C 0.21 5.14 5.82 -5.19 -0.03 5.11 16 14 C 0.00 0.05 6.83 -82.78 -0.57 -0.51 16 15 C -0.07 -1.31 10.62 -17.04 -0.18 -1.49 16 16 N -0.30 -4.96 3.25 -54.76 -0.18 -5.13 16 17 C 0.14 1.55 3.85 -67.93 -0.26 1.28 16 18 C -0.16 -1.56 9.52 37.16 0.35 -1.21 16 19 C -0.16 -1.32 8.84 37.16 0.33 -0.99 16 20 N -0.11 -2.35 13.17 60.35 0.79 -1.55 16 21 N -0.25 -6.11 12.41 33.29 0.41 -5.70 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.04 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.12 3.20 5.39 -51.93 -0.28 2.92 16 32 H 0.17 2.41 7.31 -52.49 -0.38 2.03 16 33 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.56 7.18 -51.93 -0.37 0.19 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -32.59 325.16 -5.80 -38.39 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.49 Total: -2.69 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.41 Total: -6.17 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 1.24 Total: -52.35 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.59 -5.80 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289110270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.531 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds