Wall clock time and date at job start Sun Mar 29 2020 23:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46932 * 2 1 4 4 N 1.46495 * 109.47247 * 180.02562 * 3 2 1 5 5 C 1.36934 * 120.00304 * 89.99493 * 4 3 2 6 6 H 1.07999 * 119.99789 * 35.16236 * 5 4 3 7 7 C 1.38809 * 120.00278 * 215.42789 * 5 4 3 8 8 N 1.31622 * 119.99872 * 21.27377 * 7 5 4 9 9 Si 1.86796 * 120.00362 * 201.26690 * 7 5 4 10 10 H 1.48509 * 109.47041 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47302 * 120.00150 * 9 7 5 12 12 H 1.48496 * 109.47542 * 240.00588 * 9 7 5 13 13 C 1.46510 * 119.99568 * 270.00228 * 4 3 2 14 14 C 1.50693 * 109.46702 * 273.37360 * 13 4 3 15 15 C 1.35352 * 126.74926 * 94.71641 * 14 13 4 16 16 N 1.35322 * 106.17464 * 179.84946 * 15 14 13 17 17 C 1.46493 * 125.86863 * 180.18790 * 16 15 14 18 18 C 1.53010 * 109.47045 * 275.29366 * 17 16 15 19 19 C 1.52997 * 109.47335 * 35.29221 * 17 16 15 20 20 N 1.28721 * 108.26114 * 0.41761 * 16 15 14 21 21 N 1.28639 * 110.17910 * 359.73402 * 20 16 15 22 22 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47069 * 299.99584 * 1 2 3 24 24 H 1.08995 * 109.47667 * 59.99960 * 1 2 3 25 25 H 1.08998 * 109.47149 * 240.00826 * 2 1 3 26 26 H 1.08995 * 109.47667 * 120.00040 * 2 1 3 27 27 H 1.09003 * 109.46823 * 59.99774 * 3 2 1 28 28 H 1.09003 * 109.46717 * 300.00676 * 3 2 1 29 29 H 0.96998 * 120.00134 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47003 * 33.37631 * 13 4 3 31 31 H 1.08998 * 109.46720 * 153.37611 * 13 4 3 32 32 H 1.07995 * 126.91739 * 359.97438 * 15 14 13 33 33 H 1.09002 * 109.47038 * 155.29498 * 17 16 15 34 34 H 1.09000 * 109.46941 * 300.00466 * 18 17 16 35 35 H 1.08995 * 109.46725 * 60.00238 * 18 17 16 36 36 H 1.08994 * 109.46995 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.46897 * 60.00303 * 19 17 16 38 38 H 1.09003 * 109.47145 * 179.97438 * 19 17 16 39 39 H 1.09002 * 109.47284 * 300.00127 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4427 -0.0006 5 6 4.1892 1.4428 -1.1868 6 1 3.7966 1.9815 -2.0365 7 6 5.3845 0.7461 -1.2986 8 7 5.6588 -0.2292 -0.4584 9 14 6.6037 1.1924 -2.6416 10 1 6.0625 2.3158 -3.4481 11 1 7.8914 1.6015 -2.0252 12 1 6.8268 0.0152 -3.5189 13 6 4.2379 1.4425 1.2679 14 6 4.4167 2.8607 1.7449 15 6 3.6222 3.5295 2.6129 16 7 4.1649 4.7617 2.7482 17 6 3.6476 5.8391 3.5953 18 6 2.5648 6.6092 2.8366 19 6 3.0500 5.2426 4.8712 20 7 5.2111 4.8259 2.0010 21 7 5.3887 3.7083 1.3893 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9564 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 6.4940 -0.7164 -0.5367 30 1 3.6767 0.8770 2.0117 31 1 5.2152 0.9820 1.1228 32 1 2.7348 3.1545 3.1010 33 1 4.4599 6.5173 3.8571 34 1 2.9905 7.0341 1.9276 35 1 1.7526 5.9310 2.5749 36 1 2.1796 7.4106 3.4670 37 1 3.8214 4.6941 5.4117 38 1 2.6656 6.0444 5.5017 39 1 2.2378 4.5645 4.6094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289110270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:01 Heat of formation + Delta-G solvation = 85.491429 kcal Electronic energy + Delta-G solvation = -19158.551351 eV Core-core repulsion = 16331.103890 eV Total energy + Delta-G solvation = -2827.447461 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.99891 -38.07733 -37.17325 -34.57489 -33.29910 -32.08952 -31.60449 -28.36502 -27.70079 -27.27672 -24.64197 -23.93195 -22.32494 -21.69647 -21.07790 -18.81112 -17.88775 -17.09985 -16.77502 -15.94847 -15.80261 -15.50717 -15.37547 -14.96339 -14.71528 -14.05384 -13.93696 -13.52305 -13.30814 -13.19173 -13.11051 -12.75614 -12.54071 -12.47725 -12.45394 -12.25222 -12.14867 -12.10032 -11.89900 -11.76127 -11.37212 -11.27490 -10.79052 -10.48897 -9.93476 -8.58691 -7.83005 -5.37612 0.83561 1.40639 1.48124 1.54149 1.64421 1.79782 2.53830 3.29573 3.50608 3.75352 3.84719 3.86878 4.03519 4.25457 4.33202 4.39733 4.51469 4.57667 4.65158 4.73223 4.78612 4.79585 4.86419 4.88277 4.99548 5.11468 5.18545 5.22485 5.29165 5.34134 5.46213 5.52450 5.64353 5.70060 5.83708 5.95316 6.50112 7.19572 7.79170 7.90733 8.38202 9.15974 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.007551 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.792796 B = 3707.015367 C = 4816.347456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.149 3.851 4 N -0.588 5.588 5 C -0.255 4.255 6 H 0.045 0.955 7 C -0.025 4.025 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.284 1.284 13 C 0.222 3.778 14 C -0.031 4.031 15 C -0.043 4.043 16 N -0.280 5.280 17 C 0.125 3.875 18 C -0.158 4.158 19 C -0.156 4.156 20 N -0.134 5.134 21 N -0.310 5.310 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.028 0.972 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.251 0.749 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.116 0.884 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.603 9.849 12.534 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.024 3.976 4 N -0.308 5.308 5 C -0.386 4.386 6 H 0.062 0.938 7 C -0.223 4.223 8 N -0.555 5.555 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.223 1.223 12 H -0.210 1.210 13 C 0.094 3.906 14 C -0.173 4.173 15 C -0.195 4.195 16 N -0.076 5.076 17 C 0.026 3.974 18 C -0.216 4.216 19 C -0.214 4.214 20 N -0.112 5.112 21 N -0.176 5.176 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.132 0.868 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.307 10.674 12.046 19.112 hybrid contribution 0.362 -0.568 -0.676 0.954 sum -9.945 10.107 11.370 18.175 Atomic orbital electron populations 1.21656 0.94107 1.01672 1.01987 1.21920 0.96086 0.98979 1.00072 1.21037 0.82984 0.94619 0.98965 1.43916 1.00897 1.84649 1.01326 1.19068 1.04656 1.23750 0.91083 0.93780 1.25532 1.01648 0.95268 0.99822 1.70035 1.24354 1.20663 1.40400 0.85586 0.79800 0.77578 0.79720 1.20163 1.22280 1.21050 1.19093 0.99600 0.85739 0.86210 1.23653 0.93747 1.01248 0.98644 1.23604 1.04053 0.86274 1.05558 1.47949 1.17708 1.12042 1.29909 1.22123 0.98684 0.86368 0.90251 1.22205 0.97309 1.01266 1.00803 1.22203 1.01704 1.03435 0.94086 1.78097 1.06426 1.19179 1.07532 1.75045 1.24540 0.97906 1.20112 0.92566 0.91449 0.92945 0.95349 0.93741 0.92309 0.94898 0.94013 0.92089 0.90851 0.76512 0.86823 0.93775 0.91612 0.86481 0.92155 0.86587 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.13 -4.93 6.26 30.60 0.19 -4.74 16 3 C 0.15 6.09 5.68 86.38 0.49 6.58 16 4 N -0.59 -29.78 2.43 -706.33 -1.71 -31.49 16 5 C -0.25 -14.73 9.48 84.03 0.80 -13.93 16 6 H 0.04 2.62 7.92 -2.91 -0.02 2.59 16 7 C -0.03 -1.48 4.95 84.86 0.42 -1.06 16 8 N -0.91 -54.83 11.35 21.65 0.25 -54.58 16 9 Si 0.94 48.68 29.60 68.60 2.03 50.71 16 10 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 11 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 12 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 13 C 0.22 10.78 5.82 85.63 0.50 11.28 16 14 C -0.03 -1.39 6.83 41.59 0.28 -1.10 16 15 C -0.04 -1.40 10.62 83.49 0.89 -0.51 16 16 N -0.28 -8.75 3.25 -327.16 -1.06 -9.82 16 17 C 0.13 2.34 3.85 44.99 0.17 2.51 16 18 C -0.16 -2.46 9.52 71.99 0.69 -1.77 16 19 C -0.16 -1.81 8.84 71.98 0.64 -1.17 16 20 N -0.13 -5.64 13.17 37.02 0.49 -5.15 16 21 N -0.31 -15.44 12.41 -48.60 -0.60 -16.04 16 22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.07 1.54 8.14 -2.38 -0.02 1.53 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 28 H 0.03 1.37 8.04 -2.39 -0.02 1.35 16 29 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.06 2.62 8.10 -2.39 -0.02 2.60 16 31 H 0.07 4.24 5.39 -2.39 -0.01 4.23 16 32 H 0.22 4.97 7.31 -2.91 -0.02 4.95 16 33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.82 7.18 -2.39 -0.02 0.80 16 Total: -1.00 -75.27 325.16 6.16 -69.10 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.00 Total: 4.20 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.78 Total: -6.93 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -2.65 Total: -117.08 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -75.27 6.16 -69.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289110270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.593 kcal (2) G-P(sol) polarization free energy of solvation -75.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds