Wall clock time and date at job start Sun Mar 29 2020 23:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47584 * 2 1 4 4 N 1.46500 * 109.46967 * 120.00217 * 2 1 3 5 5 C 1.35312 * 125.86582 * 274.99495 * 4 2 1 6 6 C 1.35359 * 106.17441 * 179.77310 * 5 4 2 7 7 C 1.50700 * 126.74961 * 180.24929 * 6 5 4 8 8 N 1.46904 * 109.46875 * 95.00195 * 7 6 5 9 9 C 1.46897 * 111.00104 * 293.95226 * 8 7 6 10 10 C 1.46905 * 110.99748 * 169.99785 * 8 7 6 11 11 H 1.09001 * 109.47166 * 310.00026 * 10 8 7 12 12 C 1.52999 * 109.47167 * 69.99816 * 10 8 7 13 13 C 1.50699 * 109.46966 * 189.99973 * 10 8 7 14 14 H 1.08001 * 119.99944 * 0.02562 * 13 10 8 15 15 C 1.37871 * 119.99829 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00318 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00213 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47082 * 59.99389 * 17 15 13 19 19 H 1.48494 * 109.47606 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46603 * 300.00042 * 17 15 13 21 21 N 1.33772 * 106.49554 * 0.22938 * 6 5 4 22 22 N 1.28640 * 108.88426 * 359.97438 * 21 6 5 23 23 H 1.09001 * 109.47028 * 300.00179 * 1 2 3 24 24 H 1.09004 * 109.46962 * 59.99976 * 1 2 3 25 25 H 1.08996 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47028 * 239.99821 * 2 1 3 27 27 H 1.09004 * 109.46990 * 300.00006 * 3 2 1 28 28 H 1.09001 * 109.47084 * 59.99855 * 3 2 1 29 29 H 1.09000 * 109.47296 * 179.97438 * 3 2 1 30 30 H 1.08002 * 126.91567 * 0.04325 * 5 4 2 31 31 H 1.09000 * 109.46809 * 215.00099 * 7 6 5 32 32 H 1.08996 * 109.46992 * 335.00144 * 7 6 5 33 33 H 1.08994 * 109.47214 * 59.99724 * 9 8 7 34 34 H 1.09000 * 109.47420 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.47230 * 300.00167 * 9 8 7 36 36 H 1.09001 * 109.46907 * 60.00051 * 12 10 8 37 37 H 1.08997 * 109.47370 * 179.97438 * 12 10 8 38 38 H 1.09002 * 109.47284 * 300.00467 * 12 10 8 39 39 H 0.96998 * 120.00174 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1925 -0.1343 2.4172 6 6 2.6499 -1.1232 3.2204 7 6 2.9932 -1.0104 4.6834 8 7 1.8372 -1.4228 5.4908 9 6 0.7166 -0.4881 5.3217 10 6 2.2043 -1.5539 6.9072 11 1 3.1020 -2.1659 6.9947 12 6 2.4732 -0.1671 7.4949 13 6 1.0748 -2.2083 7.6603 14 1 0.1746 -2.4982 7.1388 15 6 1.1908 -2.4369 9.0149 16 7 2.2872 -2.0844 9.6499 17 14 -0.2089 -3.2487 9.9484 18 1 -0.4689 -4.5950 9.3782 19 1 0.1615 -3.3800 11.3804 20 1 -1.4325 -2.4157 9.8285 21 7 2.7368 -2.2204 2.4601 22 7 2.3579 -1.9303 1.2655 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1301 1.4424 0.0005 30 1 2.0007 0.8913 2.6962 31 1 3.8422 -1.6559 4.9082 32 1 3.2501 0.0226 4.9177 33 1 0.4196 -0.4629 4.2733 34 1 -0.1256 -0.8166 5.9306 35 1 1.0246 0.5091 5.6361 36 1 1.5754 0.4449 7.4073 37 1 2.7451 -0.2643 8.5459 38 1 3.2901 0.3062 6.9501 39 1 2.3686 -2.2449 10.6030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289295789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:04 Heat of formation + Delta-G solvation = 103.303776 kcal Electronic energy + Delta-G solvation = -18937.489565 eV Core-core repulsion = 16110.814506 eV Total energy + Delta-G solvation = -2826.675060 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.02106 -37.31931 -36.44216 -33.01932 -31.53367 -30.95287 -28.52120 -27.77861 -26.87528 -25.17280 -23.86607 -23.67121 -21.07258 -20.49356 -19.14902 -17.15511 -16.23076 -16.09154 -15.08914 -14.98330 -14.68744 -14.20217 -13.90080 -13.55895 -13.46324 -12.98651 -12.73736 -12.62985 -12.28797 -11.88971 -11.68614 -11.45871 -11.40282 -11.05877 -11.01786 -10.74072 -10.65505 -10.60006 -10.27724 -10.00677 -9.88051 -9.72863 -8.94776 -8.79396 -8.32506 -7.09393 -5.95289 -3.98328 1.81611 2.41116 2.89580 3.37237 3.41127 3.45107 4.10086 4.39708 4.47269 4.57314 4.63878 5.02852 5.08757 5.12506 5.22904 5.25993 5.32296 5.36705 5.47812 5.57785 5.72173 5.80591 6.08758 6.25066 6.26422 6.41955 6.52595 6.70119 6.79439 6.83852 6.90830 7.14954 7.50209 7.74778 7.89499 8.18935 8.43053 8.64171 8.84628 9.07130 9.66225 11.11884 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.004605 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.418062 B = 6079.548052 C = 6211.433051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 C -0.165 4.165 4 N -0.292 5.292 5 C -0.054 4.054 6 C 0.011 3.989 7 C 0.135 3.865 8 N -0.527 5.527 9 C 0.036 3.964 10 C 0.212 3.788 11 H 0.041 0.959 12 C -0.172 4.172 13 C -0.496 4.496 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.279 1.279 21 N -0.252 5.252 22 N -0.098 5.098 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.181 0.819 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.017 0.983 36 H 0.031 0.969 37 H 0.089 0.911 38 H 0.007 0.993 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 9.897 -17.567 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 C -0.223 4.223 4 N -0.087 5.087 5 C -0.205 4.205 6 C -0.128 4.128 7 C 0.005 3.995 8 N -0.251 5.251 9 C -0.112 4.112 10 C 0.106 3.894 11 H 0.059 0.941 12 C -0.232 4.232 13 C -0.535 4.535 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.205 1.205 21 N -0.119 5.119 22 N -0.077 5.077 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.198 0.802 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.107 0.893 38 H 0.026 0.974 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.340 8.085 -18.340 20.088 hybrid contribution -0.695 1.526 1.325 2.137 sum -2.034 9.612 -17.015 19.648 Atomic orbital electron populations 1.22222 0.92610 1.03895 1.03612 1.21597 0.95793 0.93552 0.85315 1.22201 1.02497 0.93519 1.04062 1.47483 1.43102 1.08475 1.09685 1.23220 1.09711 1.02017 0.85569 1.22106 1.03470 0.89115 0.98121 1.20271 0.95472 0.99205 0.84592 1.62272 1.04835 1.46647 1.11325 1.22221 0.95965 0.93873 0.99174 1.19338 0.97165 0.92598 0.80331 0.94087 1.22418 0.97171 0.98965 1.04599 1.21056 1.01826 1.38149 0.92445 0.92068 1.24906 0.95908 0.95867 0.97579 1.69870 1.26311 1.47929 1.09428 0.86586 0.82324 0.80089 0.78538 1.20220 1.21433 1.20464 1.75083 1.16146 1.24407 0.96232 1.78262 1.16671 0.96089 1.16632 0.91371 0.89988 0.91214 0.87159 0.89664 0.91084 0.91263 0.80154 0.89681 0.93946 0.94388 0.90881 0.96511 0.95004 0.89278 0.97418 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.52 37.16 0.35 -0.85 16 2 C 0.14 1.16 3.85 -67.93 -0.26 0.89 16 3 C -0.16 -0.95 8.83 37.16 0.33 -0.62 16 4 N -0.29 -3.88 3.25 -54.76 -0.18 -4.06 16 5 C -0.05 -0.76 9.63 -17.04 -0.16 -0.92 16 6 C 0.01 0.19 5.97 -82.77 -0.49 -0.31 16 7 C 0.13 2.57 5.10 -4.97 -0.03 2.55 16 8 N -0.53 -11.72 4.69 -237.73 -1.12 -12.84 16 9 C 0.04 0.72 8.46 60.06 0.51 1.23 16 10 C 0.21 5.37 2.31 -68.86 -0.16 5.21 16 11 H 0.04 1.15 7.93 -51.93 -0.41 0.74 16 12 C -0.17 -4.10 8.22 37.16 0.31 -3.79 16 13 C -0.50 -13.78 7.91 -34.44 -0.27 -14.06 16 14 H 0.06 1.72 7.12 -52.49 -0.37 1.35 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 16 N -0.90 -25.63 11.32 55.43 0.63 -25.00 16 17 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 N -0.25 -4.98 12.41 33.29 0.41 -4.56 16 22 N -0.10 -1.69 13.17 60.35 0.79 -0.89 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.41 7.17 -51.93 -0.37 0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.18 1.93 7.30 -52.49 -0.38 1.55 16 31 H 0.08 1.69 7.93 -51.93 -0.41 1.28 16 32 H 0.04 0.74 7.06 -51.93 -0.37 0.37 16 33 H 0.04 0.68 6.56 -51.93 -0.34 0.33 16 34 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 35 H 0.02 0.31 6.46 -51.93 -0.34 -0.03 16 36 H 0.03 0.73 6.42 -51.93 -0.33 0.39 16 37 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 38 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -32.00 311.65 -5.79 -37.78 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -6.03 Total: -2.62 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 0.02 Total: -9.15 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.54 Total: -47.35 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.00 -5.79 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289295789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.087 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds