Wall clock time and date at job start Sun Mar 29 2020 23:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47584 * 2 1 4 4 N 1.46500 * 109.46967 * 120.00217 * 2 1 3 5 5 C 1.35312 * 125.86582 * 274.99495 * 4 2 1 6 6 C 1.35359 * 106.17441 * 179.77310 * 5 4 2 7 7 C 1.50700 * 126.74961 * 180.24929 * 6 5 4 8 8 N 1.46904 * 109.46875 * 95.00195 * 7 6 5 9 9 C 1.46897 * 111.00104 * 293.95226 * 8 7 6 10 10 C 1.46905 * 110.99748 * 169.99785 * 8 7 6 11 11 H 1.09001 * 109.47166 * 310.00026 * 10 8 7 12 12 C 1.52999 * 109.47167 * 69.99816 * 10 8 7 13 13 C 1.50699 * 109.46966 * 189.99973 * 10 8 7 14 14 H 1.08001 * 119.99944 * 0.02562 * 13 10 8 15 15 C 1.37871 * 119.99829 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00318 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00213 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47082 * 59.99389 * 17 15 13 19 19 H 1.48494 * 109.47606 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46603 * 300.00042 * 17 15 13 21 21 N 1.33772 * 106.49554 * 0.22938 * 6 5 4 22 22 N 1.28640 * 108.88426 * 359.97438 * 21 6 5 23 23 H 1.09001 * 109.47028 * 300.00179 * 1 2 3 24 24 H 1.09004 * 109.46962 * 59.99976 * 1 2 3 25 25 H 1.08996 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47028 * 239.99821 * 2 1 3 27 27 H 1.09004 * 109.46990 * 300.00006 * 3 2 1 28 28 H 1.09001 * 109.47084 * 59.99855 * 3 2 1 29 29 H 1.09000 * 109.47296 * 179.97438 * 3 2 1 30 30 H 1.08002 * 126.91567 * 0.04325 * 5 4 2 31 31 H 1.09000 * 109.46809 * 215.00099 * 7 6 5 32 32 H 1.08996 * 109.46992 * 335.00144 * 7 6 5 33 33 H 1.08994 * 109.47214 * 59.99724 * 9 8 7 34 34 H 1.09000 * 109.47420 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.47230 * 300.00167 * 9 8 7 36 36 H 1.09001 * 109.46907 * 60.00051 * 12 10 8 37 37 H 1.08997 * 109.47370 * 179.97438 * 12 10 8 38 38 H 1.09002 * 109.47284 * 300.00467 * 12 10 8 39 39 H 0.96998 * 120.00174 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1925 -0.1343 2.4172 6 6 2.6499 -1.1232 3.2204 7 6 2.9932 -1.0104 4.6834 8 7 1.8372 -1.4228 5.4908 9 6 0.7166 -0.4881 5.3217 10 6 2.2043 -1.5539 6.9072 11 1 3.1020 -2.1659 6.9947 12 6 2.4732 -0.1671 7.4949 13 6 1.0748 -2.2083 7.6603 14 1 0.1746 -2.4982 7.1388 15 6 1.1908 -2.4369 9.0149 16 7 2.2872 -2.0844 9.6499 17 14 -0.2089 -3.2487 9.9484 18 1 -0.4689 -4.5950 9.3782 19 1 0.1615 -3.3800 11.3804 20 1 -1.4325 -2.4157 9.8285 21 7 2.7368 -2.2204 2.4601 22 7 2.3579 -1.9303 1.2655 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1301 1.4424 0.0005 30 1 2.0007 0.8913 2.6962 31 1 3.8422 -1.6559 4.9082 32 1 3.2501 0.0226 4.9177 33 1 0.4196 -0.4629 4.2733 34 1 -0.1256 -0.8166 5.9306 35 1 1.0246 0.5091 5.6361 36 1 1.5754 0.4449 7.4073 37 1 2.7451 -0.2643 8.5459 38 1 3.2901 0.3062 6.9501 39 1 2.3686 -2.2449 10.6030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289295789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:03 Heat of formation + Delta-G solvation = 80.826818 kcal Electronic energy + Delta-G solvation = -18938.464239 eV Core-core repulsion = 16110.814506 eV Total energy + Delta-G solvation = -2827.649734 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.21098 -38.99592 -37.33806 -34.93105 -32.90912 -32.11640 -30.30103 -28.53513 -28.14716 -27.22290 -25.43269 -24.75185 -22.43108 -21.55322 -20.84842 -18.32532 -17.97463 -17.39340 -16.86590 -16.14601 -15.87808 -15.62250 -15.33001 -15.11137 -14.40484 -14.22463 -14.01031 -13.60425 -13.26464 -13.17655 -13.04829 -12.82171 -12.62276 -12.59298 -12.47963 -12.41820 -12.29956 -12.13731 -12.01847 -11.78506 -11.55412 -10.98302 -10.87218 -10.45477 -10.13721 -8.79560 -8.07340 -6.17744 0.68905 1.43572 1.45949 1.49344 1.53151 1.57010 2.45947 3.21455 3.32801 3.57303 3.59357 3.82451 3.99880 4.03405 4.15966 4.42943 4.53289 4.63228 4.66570 4.68929 4.76190 4.78243 4.79519 4.89049 4.92773 5.01514 5.14560 5.16967 5.18844 5.19515 5.28824 5.56989 5.74291 5.79271 5.84327 6.25435 6.53874 6.75561 6.94716 7.51020 7.60464 8.98343 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.004605 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.418062 B = 6079.548052 C = 6211.433051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 C -0.159 4.159 4 N -0.277 5.277 5 C -0.029 4.029 6 C -0.018 4.018 7 C 0.142 3.858 8 N -0.547 5.547 9 C 0.045 3.955 10 C 0.217 3.783 11 H 0.003 0.997 12 C -0.157 4.157 13 C -0.514 4.514 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.957 3.043 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.270 1.270 21 N -0.302 5.302 22 N -0.121 5.121 23 H 0.065 0.935 24 H 0.115 0.885 25 H 0.047 0.953 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.221 0.779 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 12.111 -19.083 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 C -0.217 4.217 4 N -0.073 5.073 5 C -0.181 4.181 6 C -0.158 4.158 7 C 0.012 3.988 8 N -0.271 5.271 9 C -0.103 4.103 10 C 0.110 3.890 11 H 0.021 0.979 12 C -0.216 4.216 13 C -0.552 4.552 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.783 3.217 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.195 1.195 21 N -0.167 5.167 22 N -0.099 5.099 23 H 0.084 0.916 24 H 0.134 0.866 25 H 0.066 0.934 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.237 0.763 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.549 10.300 -19.903 22.555 hybrid contribution -0.322 0.883 1.656 1.904 sum -2.871 11.183 -18.247 21.593 Atomic orbital electron populations 1.22231 0.91523 1.02949 1.05195 1.22169 0.96609 0.94878 0.83653 1.22233 1.02124 0.91493 1.05870 1.47973 1.40918 1.07479 1.10895 1.23622 1.06944 1.02640 0.84895 1.21986 1.05953 0.90132 0.97701 1.20138 0.93643 0.99701 0.85288 1.62104 1.06688 1.48664 1.09677 1.22138 0.94292 0.93822 1.00041 1.19070 0.94830 0.92696 0.82440 0.97878 1.22186 0.98220 0.98296 1.02899 1.21308 1.02158 1.38712 0.93068 0.93108 1.25634 0.98143 0.96353 0.98388 1.69996 1.27761 1.48558 1.09608 0.85635 0.79795 0.78969 0.77335 1.20393 1.20800 1.19473 1.75015 1.17992 1.26261 0.97475 1.78160 1.17821 0.98071 1.15842 0.91564 0.86622 0.93402 0.86323 0.86704 0.90459 0.91848 0.76286 0.91778 0.91777 0.92313 0.93057 0.94923 0.94291 0.92059 0.95025 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.52 71.98 0.69 -1.17 16 2 C 0.13 1.71 3.85 44.99 0.17 1.89 16 3 C -0.16 -1.17 8.83 71.98 0.64 -0.54 16 4 N -0.28 -6.81 3.25 -327.16 -1.06 -7.88 16 5 C -0.03 -0.73 9.63 83.49 0.80 0.08 16 6 C -0.02 -0.63 5.97 41.60 0.25 -0.38 16 7 C 0.14 5.39 5.10 85.56 0.44 5.83 16 8 N -0.55 -24.42 4.69 -906.04 -4.25 -28.67 16 9 C 0.05 1.73 8.46 127.69 1.08 2.81 16 10 C 0.22 11.22 2.31 44.17 0.10 11.32 16 11 H 0.00 0.19 7.93 -2.39 -0.02 0.17 16 12 C -0.16 -7.41 8.22 71.98 0.59 -6.82 16 13 C -0.51 -29.06 7.91 25.60 0.20 -28.86 16 14 H 0.05 2.91 7.12 -2.91 -0.02 2.89 16 15 C 0.01 0.75 5.30 84.65 0.45 1.20 16 16 N -0.92 -53.38 11.32 21.44 0.24 -53.14 16 17 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 N -0.30 -12.05 12.41 -48.59 -0.60 -12.65 16 22 N -0.12 -4.10 13.17 37.02 0.49 -3.61 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 28 H 0.08 0.51 7.17 -2.39 -0.02 0.49 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.22 3.65 7.30 -2.91 -0.02 3.63 16 31 H 0.06 2.65 7.93 -2.39 -0.02 2.63 16 32 H 0.06 2.12 7.06 -2.39 -0.02 2.10 16 33 H 0.06 1.97 6.56 -2.39 -0.02 1.95 16 34 H 0.05 2.17 6.76 -2.39 -0.02 2.15 16 35 H 0.03 1.13 6.46 -2.39 -0.02 1.12 16 36 H 0.04 1.74 6.42 -2.39 -0.02 1.73 16 37 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 38 H 0.03 1.29 6.91 -2.39 -0.02 1.28 16 39 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -71.61 311.65 3.27 -68.34 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.03 Total: 5.56 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.41 Total: -14.65 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -5.19 Total: -105.95 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -71.61 3.27 -68.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289295789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.166 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds