Wall clock time and date at job start Sun Mar 29 2020 23:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47150 * 286.42596 * 3 2 1 5 5 C 1.36941 * 119.99934 * 89.54691 * 4 3 2 6 6 H 1.07997 * 119.99826 * 158.21986 * 5 4 3 7 7 C 1.38815 * 119.99913 * 338.21763 * 5 4 3 8 8 N 1.31613 * 120.00182 * 5.89921 * 7 5 4 9 9 Si 1.86803 * 119.99932 * 185.89682 * 7 5 4 10 10 H 1.48497 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46879 * 119.99787 * 9 7 5 12 12 H 1.48499 * 109.47148 * 240.00055 * 9 7 5 13 13 C 1.46498 * 120.00269 * 269.27078 * 4 3 2 14 14 C 1.52999 * 109.47177 * 89.99812 * 13 4 3 15 15 H 1.09004 * 109.46908 * 60.00353 * 14 13 4 16 16 O 1.42892 * 109.47265 * 300.00509 * 14 13 4 17 17 C 1.52999 * 109.47192 * 180.02562 * 14 13 4 18 18 N 1.46903 * 109.47299 * 181.10191 * 17 14 13 19 19 C 1.46895 * 110.99844 * 199.88252 * 18 17 14 20 20 C 1.46904 * 110.99756 * 75.92752 * 18 17 14 21 21 C 1.52995 * 117.49774 * 248.62098 * 20 18 17 22 22 C 1.52996 * 117.49585 * 179.97438 * 20 18 17 23 23 H 4.40641 * 5.51436 * 179.97438 * 4 1 2 24 24 H 1.09002 * 109.47190 * 166.42649 * 3 2 1 25 25 H 1.08994 * 109.47125 * 46.42658 * 3 2 1 26 26 H 0.96994 * 120.00287 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47512 * 210.00162 * 13 4 3 28 28 H 1.09004 * 109.46914 * 330.00168 * 13 4 3 29 29 H 0.96702 * 113.99893 * 299.99474 * 16 14 13 30 30 H 1.09005 * 109.47250 * 301.10167 * 17 14 13 31 31 H 1.08998 * 109.47203 * 61.09714 * 17 14 13 32 32 H 1.08999 * 109.47213 * 64.50784 * 19 18 17 33 33 H 1.09004 * 109.46788 * 184.50667 * 19 18 17 34 34 H 1.09005 * 109.47366 * 304.50198 * 19 18 17 35 35 H 1.09007 * 115.54933 * 34.33527 * 20 18 17 36 36 H 1.08993 * 117.50086 * 0.02562 * 21 20 18 37 37 H 1.09005 * 117.49841 * 145.02166 * 21 20 18 38 38 H 1.09000 * 117.49923 * 214.97931 * 22 20 18 39 39 H 1.08995 * 117.50075 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3897 1.3248 5 6 3.3545 -1.7105 1.6117 6 1 4.0223 -1.9847 2.4149 7 6 2.7192 -2.6970 0.8699 8 7 1.9979 -2.3685 -0.1808 9 14 2.8879 -4.4908 1.3631 10 1 3.7451 -4.5934 2.5714 11 1 1.5451 -5.0508 1.6605 12 1 3.5072 -5.2541 0.2500 13 6 3.3935 0.6334 2.3409 14 6 2.1238 0.8707 3.1609 15 1 1.8271 -0.0582 3.6481 16 8 1.0744 1.3119 2.2972 17 6 2.3941 1.9397 4.2216 18 7 1.1828 2.1486 5.0261 19 6 1.2259 3.4450 5.7155 20 6 0.9898 1.0500 5.9820 21 6 -0.1946 0.1102 5.7484 22 6 -0.2329 1.1184 6.8992 23 1 -1.0499 0.0001 0.0002 24 1 3.0090 0.9998 -0.2412 25 1 3.0097 -0.7075 -0.7445 26 1 1.5536 -3.0577 -0.6988 27 1 4.1940 0.2969 2.9997 28 1 3.6902 1.5623 1.8537 29 1 1.2700 2.1354 1.8295 30 1 3.2079 1.6121 4.8686 31 1 2.6717 2.8739 3.7335 32 1 1.2183 4.2486 4.9791 33 1 0.3561 3.5398 6.3657 34 1 2.1351 3.5086 6.3134 35 1 1.9027 0.6177 6.3920 36 1 -0.8304 0.3067 4.8852 37 1 -0.0612 -0.9410 6.0044 38 1 -0.1246 0.7303 7.9120 39 1 -0.8938 1.9786 6.7936 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289374613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:39 Heat of formation + Delta-G solvation = 77.819493 kcal Electronic energy + Delta-G solvation = -19452.107900 eV Core-core repulsion = 16592.035008 eV Total energy + Delta-G solvation = -2860.072892 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.62415 -36.90110 -34.98828 -33.64266 -31.32094 -31.15000 -29.11773 -26.37772 -25.77762 -24.20865 -22.09483 -21.96051 -20.50242 -20.03144 -17.31172 -16.54364 -16.04557 -15.57632 -15.22981 -14.71641 -14.48155 -14.22832 -13.69203 -13.32379 -13.02447 -12.89106 -12.55505 -12.13265 -11.76326 -11.52767 -11.30157 -11.16835 -11.07060 -10.88034 -10.50973 -10.31798 -10.19697 -10.05045 -10.03482 -9.95166 -9.25710 -8.86555 -8.35060 -8.04139 -7.98588 -6.79343 -5.67839 -3.16353 3.39603 3.46507 3.48505 3.91598 3.95866 4.44008 4.66232 4.89708 5.06663 5.09991 5.15993 5.22834 5.34479 5.44067 5.50177 5.63305 5.70931 5.72547 5.81148 5.89206 5.95382 6.03601 6.09066 6.19642 6.22107 6.26491 6.44357 6.59008 6.90658 6.97526 7.23311 7.30815 7.58752 7.76635 7.81720 8.41862 8.64960 9.24676 9.64789 9.86331 10.32356 11.31645 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.006981 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.715425 B = 4010.075595 C = 4471.914485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.067 4.067 3 C 0.273 3.727 4 N -0.583 5.583 5 C -0.260 4.260 6 H 0.072 0.928 7 C 0.008 3.992 8 N -0.892 5.892 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.291 1.291 13 C 0.120 3.880 14 C 0.094 3.906 15 H 0.092 0.908 16 O -0.521 6.521 17 C 0.026 3.974 18 N -0.502 5.502 19 C 0.027 3.973 20 C 0.008 3.992 21 C -0.154 4.154 22 C -0.182 4.182 23 H 0.179 0.821 24 H 0.021 0.979 25 H 0.105 0.895 26 H 0.253 0.747 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.349 0.651 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 9.739 9.479 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 C -0.071 4.071 3 C 0.149 3.851 4 N -0.303 5.303 5 C -0.389 4.389 6 H 0.090 0.910 7 C -0.191 4.191 8 N -0.536 5.536 9 Si 0.732 3.268 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.218 1.218 13 C -0.008 4.008 14 C 0.031 3.969 15 H 0.110 0.890 16 O -0.323 6.323 17 C -0.103 4.103 18 N -0.226 5.226 19 C -0.121 4.121 20 C -0.100 4.100 21 C -0.192 4.192 22 C -0.220 4.220 23 H 0.196 0.804 24 H 0.038 0.962 25 H 0.123 0.877 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.193 0.807 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.775 9.056 9.264 12.979 hybrid contribution 0.582 -0.646 0.856 1.220 sum -0.193 8.410 10.121 13.160 Atomic orbital electron populations 1.23806 0.94969 1.09416 1.04928 1.23809 0.94740 0.92749 0.95765 1.17909 0.83413 0.95478 0.88320 1.43914 1.75660 1.02633 1.08066 1.19229 1.21508 0.81644 1.16480 0.91036 1.25064 0.97603 0.98218 0.98178 1.69967 1.34937 1.31079 1.17629 0.86229 0.77221 0.85490 0.77867 1.20530 1.21679 1.21775 1.21559 0.94980 0.92422 0.91874 1.22672 0.90549 0.95083 0.88630 0.89016 1.86846 1.41577 1.43347 1.60497 1.23031 0.89861 1.00728 0.96656 1.61754 1.38393 1.00511 1.21906 1.22368 1.00067 0.91542 0.98131 1.22421 0.92692 0.97268 0.97652 1.23045 1.01176 0.95322 0.99668 1.23051 1.01019 1.02696 0.95204 0.80367 0.96152 0.87708 0.93560 0.93194 0.94260 0.80736 0.94505 0.91325 0.91657 0.91687 0.96235 0.89763 0.87722 0.89060 0.89212 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.62 18.39 29.55 0.54 -7.08 16 2 C -0.07 -1.69 9.04 -37.12 -0.34 -2.03 16 3 C 0.27 6.61 5.42 -6.83 -0.04 6.57 16 4 N -0.58 -14.14 2.46 -176.57 -0.43 -14.58 16 5 C -0.26 -6.97 9.70 -15.06 -0.15 -7.12 16 6 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 7 C 0.01 0.21 5.39 -17.43 -0.09 0.12 16 8 N -0.89 -25.54 8.33 55.49 0.46 -25.08 16 9 Si 0.90 21.96 29.56 -169.99 -5.02 16.94 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 C 0.12 2.34 5.41 -4.04 -0.02 2.32 16 14 C 0.09 1.74 3.32 -26.73 -0.09 1.65 16 15 H 0.09 2.03 7.71 -51.93 -0.40 1.63 16 16 O -0.52 -10.46 9.64 -35.23 -0.34 -10.79 16 17 C 0.03 0.39 4.65 -3.82 -0.02 0.37 16 18 N -0.50 -7.28 4.72 -234.88 -1.11 -8.39 16 19 C 0.03 0.32 9.42 60.06 0.57 0.88 16 20 C 0.01 0.12 4.67 -67.72 -0.32 -0.20 16 21 C -0.15 -2.27 10.46 -26.71 -0.28 -2.55 16 22 C -0.18 -2.21 9.67 -26.71 -0.26 -2.46 16 23 H 0.18 3.89 7.80 -54.10 -0.42 3.47 16 24 H 0.02 0.44 7.88 -51.93 -0.41 0.03 16 25 H 0.11 2.80 6.31 -51.93 -0.33 2.48 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.05 0.94 8.03 -51.93 -0.42 0.53 16 28 H 0.04 0.68 7.89 -51.93 -0.41 0.27 16 29 H 0.35 6.08 9.04 45.56 0.41 6.49 16 30 H 0.04 0.53 7.83 -51.93 -0.41 0.12 16 31 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.70 6.61 -51.93 -0.34 0.36 16 34 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 35 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 36 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.11 7.25 -51.93 -0.38 0.74 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -30.16 320.58 -7.68 -37.85 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.58 Total: 8.75 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.49 Total: -9.52 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -1.08 Total: -48.05 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.34 Total: -10.79 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.16 -7.68 -37.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289374613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.665 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds