Wall clock time and date at job start Sun Mar 29 2020 23:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47150 * 286.42596 * 3 2 1 5 5 C 1.36941 * 119.99934 * 89.54691 * 4 3 2 6 6 H 1.07997 * 119.99826 * 158.21986 * 5 4 3 7 7 C 1.38815 * 119.99913 * 338.21763 * 5 4 3 8 8 N 1.31613 * 120.00182 * 5.89921 * 7 5 4 9 9 Si 1.86803 * 119.99932 * 185.89682 * 7 5 4 10 10 H 1.48497 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46879 * 119.99787 * 9 7 5 12 12 H 1.48499 * 109.47148 * 240.00055 * 9 7 5 13 13 C 1.46498 * 120.00269 * 269.27078 * 4 3 2 14 14 C 1.52999 * 109.47177 * 89.99812 * 13 4 3 15 15 H 1.09004 * 109.46908 * 60.00353 * 14 13 4 16 16 O 1.42892 * 109.47265 * 300.00509 * 14 13 4 17 17 C 1.52999 * 109.47192 * 180.02562 * 14 13 4 18 18 N 1.46903 * 109.47299 * 181.10191 * 17 14 13 19 19 C 1.46895 * 110.99844 * 199.88252 * 18 17 14 20 20 C 1.46904 * 110.99756 * 75.92752 * 18 17 14 21 21 C 1.52995 * 117.49774 * 248.62098 * 20 18 17 22 22 C 1.52996 * 117.49585 * 179.97438 * 20 18 17 23 23 H 4.40641 * 5.51436 * 179.97438 * 4 1 2 24 24 H 1.09002 * 109.47190 * 166.42649 * 3 2 1 25 25 H 1.08994 * 109.47125 * 46.42658 * 3 2 1 26 26 H 0.96994 * 120.00287 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47512 * 210.00162 * 13 4 3 28 28 H 1.09004 * 109.46914 * 330.00168 * 13 4 3 29 29 H 0.96702 * 113.99893 * 299.99474 * 16 14 13 30 30 H 1.09005 * 109.47250 * 301.10167 * 17 14 13 31 31 H 1.08998 * 109.47203 * 61.09714 * 17 14 13 32 32 H 1.08999 * 109.47213 * 64.50784 * 19 18 17 33 33 H 1.09004 * 109.46788 * 184.50667 * 19 18 17 34 34 H 1.09005 * 109.47366 * 304.50198 * 19 18 17 35 35 H 1.09007 * 115.54933 * 34.33527 * 20 18 17 36 36 H 1.08993 * 117.50086 * 0.02562 * 21 20 18 37 37 H 1.09005 * 117.49841 * 145.02166 * 21 20 18 38 38 H 1.09000 * 117.49923 * 214.97931 * 22 20 18 39 39 H 1.08995 * 117.50075 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3897 1.3248 5 6 3.3545 -1.7105 1.6117 6 1 4.0223 -1.9847 2.4149 7 6 2.7192 -2.6970 0.8699 8 7 1.9979 -2.3685 -0.1808 9 14 2.8879 -4.4908 1.3631 10 1 3.7451 -4.5934 2.5714 11 1 1.5451 -5.0508 1.6605 12 1 3.5072 -5.2541 0.2500 13 6 3.3935 0.6334 2.3409 14 6 2.1238 0.8707 3.1609 15 1 1.8271 -0.0582 3.6481 16 8 1.0744 1.3119 2.2972 17 6 2.3941 1.9397 4.2216 18 7 1.1828 2.1486 5.0261 19 6 1.2259 3.4450 5.7155 20 6 0.9898 1.0500 5.9820 21 6 -0.1946 0.1102 5.7484 22 6 -0.2329 1.1184 6.8992 23 1 -1.0499 0.0001 0.0002 24 1 3.0090 0.9998 -0.2412 25 1 3.0097 -0.7075 -0.7445 26 1 1.5536 -3.0577 -0.6988 27 1 4.1940 0.2969 2.9997 28 1 3.6902 1.5623 1.8537 29 1 1.2700 2.1354 1.8295 30 1 3.2079 1.6121 4.8686 31 1 2.6717 2.8739 3.7335 32 1 1.2183 4.2486 4.9791 33 1 0.3561 3.5398 6.3657 34 1 2.1351 3.5086 6.3134 35 1 1.9027 0.6177 6.3920 36 1 -0.8304 0.3067 4.8852 37 1 -0.0612 -0.9410 6.0044 38 1 -0.1246 0.7303 7.9120 39 1 -0.8938 1.9786 6.7936 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289374613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:39 Heat of formation + Delta-G solvation = 57.772361 kcal Electronic energy + Delta-G solvation = -19452.977209 eV Core-core repulsion = 16592.035008 eV Total energy + Delta-G solvation = -2860.942201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.83657 -38.42190 -36.68276 -34.81456 -33.21312 -33.06070 -30.61931 -27.94162 -27.53355 -25.51457 -23.59659 -23.12921 -22.12355 -21.15710 -19.26568 -18.17387 -17.63728 -16.92965 -16.71151 -16.32543 -15.78017 -15.63273 -15.42554 -14.82138 -14.71517 -14.23665 -13.82507 -13.49976 -13.21641 -13.01420 -12.87049 -12.70393 -12.69912 -12.25093 -12.21338 -12.19632 -11.85223 -11.67693 -11.24625 -11.11303 -11.02800 -10.67000 -10.26130 -9.94132 -9.14072 -8.70827 -7.75606 -5.23230 1.43894 1.47196 1.54707 2.47004 2.71342 2.85602 2.88902 2.95188 3.37765 3.81198 3.93217 4.02919 4.09203 4.15788 4.24479 4.36246 4.43792 4.44961 4.64298 4.70193 4.75453 4.76791 4.78597 4.85955 5.00239 5.02617 5.10699 5.14418 5.29815 5.44881 5.57728 5.68339 5.91893 6.17789 6.22693 6.39654 7.20225 7.25413 7.71480 7.92072 8.32086 9.21584 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.006981 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.715425 B = 4010.075595 C = 4471.914485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.082 4.082 3 C 0.275 3.725 4 N -0.597 5.597 5 C -0.261 4.261 6 H 0.074 0.926 7 C -0.046 4.046 8 N -0.915 5.915 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.303 1.303 12 H -0.290 1.290 13 C 0.118 3.882 14 C 0.107 3.893 15 H 0.050 0.950 16 O -0.542 6.542 17 C 0.039 3.961 18 N -0.520 5.520 19 C 0.029 3.971 20 C -0.001 4.001 21 C -0.179 4.179 22 C -0.150 4.150 23 H 0.197 0.803 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.243 0.757 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.361 0.639 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 11.280 11.117 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.342 4.342 2 C -0.085 4.085 3 C 0.151 3.849 4 N -0.317 5.317 5 C -0.390 4.390 6 H 0.091 0.909 7 C -0.241 4.241 8 N -0.561 5.561 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.231 1.231 12 H -0.217 1.217 13 C -0.009 4.009 14 C 0.044 3.956 15 H 0.068 0.932 16 O -0.345 6.345 17 C -0.090 4.090 18 N -0.244 5.244 19 C -0.119 4.119 20 C -0.110 4.110 21 C -0.217 4.217 22 C -0.187 4.187 23 H 0.214 0.786 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.180 10.632 10.931 15.250 hybrid contribution 0.414 -1.062 0.366 1.197 sum 0.234 9.569 11.297 14.807 Atomic orbital electron populations 1.24383 0.95832 1.09241 1.04718 1.24165 0.95361 0.92934 0.96010 1.17811 0.83075 0.96210 0.87854 1.44063 1.75658 1.02728 1.09282 1.19511 1.20784 0.83168 1.15586 0.90870 1.25687 0.98302 1.01454 0.98656 1.70167 1.36186 1.31220 1.18494 0.85343 0.76433 0.81689 0.77833 1.19247 1.23055 1.21744 1.21737 0.95514 0.92325 0.91345 1.22316 0.89214 0.94830 0.89201 0.93220 1.86808 1.42313 1.44262 1.61118 1.22786 0.90277 1.00119 0.95813 1.61650 1.38279 1.01741 1.22730 1.22409 1.00994 0.90014 0.98453 1.22496 0.92994 0.97159 0.98307 1.22943 1.02198 0.96046 1.00482 1.23107 0.99107 1.01304 0.95229 0.78554 0.92934 0.90702 0.94664 0.92570 0.91385 0.79399 0.93741 0.89148 0.90798 0.90853 0.95173 0.89693 0.90617 0.89280 0.86883 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -15.76 18.39 74.32 1.37 -14.39 16 2 C -0.08 -4.09 9.04 31.12 0.28 -3.81 16 3 C 0.28 13.24 5.42 84.57 0.46 13.70 16 4 N -0.60 -28.66 2.46 -712.56 -1.75 -30.41 16 5 C -0.26 -14.00 9.70 84.03 0.82 -13.18 16 6 H 0.07 3.82 7.82 -2.91 -0.02 3.80 16 7 C -0.05 -2.54 5.39 84.86 0.46 -2.09 16 8 N -0.91 -53.40 8.33 21.65 0.18 -53.22 16 9 Si 0.96 45.80 29.56 68.60 2.03 47.83 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 13 C 0.12 4.39 5.41 86.38 0.47 4.86 16 14 C 0.11 3.87 3.32 30.59 0.10 3.97 16 15 H 0.05 2.23 7.71 -2.38 -0.02 2.21 16 16 O -0.54 -21.29 9.64 -148.98 -1.44 -22.73 16 17 C 0.04 1.06 4.65 86.30 0.40 1.46 16 18 N -0.52 -14.00 4.72 -897.03 -4.24 -18.24 16 19 C 0.03 0.58 9.42 127.69 1.20 1.78 16 20 C 0.00 -0.02 4.67 44.91 0.21 0.19 16 21 C -0.18 -5.27 10.46 30.61 0.32 -4.95 16 22 C -0.15 -3.31 9.67 30.61 0.30 -3.01 16 23 H 0.20 8.51 7.80 -4.42 -0.03 8.48 16 24 H 0.05 2.15 7.88 -2.39 -0.02 2.13 16 25 H 0.08 4.07 6.31 -2.39 -0.02 4.05 16 26 H 0.24 14.18 8.31 -92.71 -0.77 13.40 16 27 H 0.06 2.02 8.03 -2.39 -0.02 2.00 16 28 H 0.07 2.15 7.89 -2.38 -0.02 2.13 16 29 H 0.36 11.97 9.04 -74.06 -0.67 11.30 16 30 H 0.04 1.15 7.83 -2.38 -0.02 1.13 16 31 H 0.09 2.07 7.94 -2.39 -0.02 2.06 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.35 6.61 -2.38 -0.02 1.34 16 34 H 0.03 0.55 8.13 -2.38 -0.02 0.53 16 35 H 0.09 2.26 7.89 -2.38 -0.02 2.24 16 36 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 38 H 0.11 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.10 2.12 7.25 -2.39 -0.02 2.10 16 Total: -1.00 -65.12 320.58 1.50 -63.61 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.35 Total: 28.64 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 6.38 Total: -15.48 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -5.81 Total: -101.88 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.44 Total: -22.73 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -65.12 1.50 -63.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289374613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.384 kcal (2) G-P(sol) polarization free energy of solvation -65.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds