Wall clock time and date at job start Sun Mar 29 2020 23:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47147 * 283.68690 * 3 2 1 5 5 C 1.36939 * 120.00305 * 269.71591 * 4 3 2 6 6 H 1.07996 * 120.00686 * 189.40126 * 5 4 3 7 7 C 1.38818 * 119.99403 * 9.40282 * 5 4 3 8 8 N 1.31614 * 120.00285 * 24.57162 * 7 5 4 9 9 Si 1.86804 * 119.99693 * 204.56477 * 7 5 4 10 10 H 1.48503 * 109.46996 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46898 * 119.99918 * 9 7 5 12 12 H 1.48500 * 109.47302 * 240.00086 * 9 7 5 13 13 C 1.46497 * 119.99910 * 89.72003 * 4 3 2 14 14 C 1.52996 * 109.47148 * 269.99554 * 13 4 3 15 15 H 1.08997 * 109.47350 * 305.00245 * 14 13 4 16 16 O 1.42903 * 109.46801 * 65.00289 * 14 13 4 17 17 C 1.53005 * 109.47265 * 185.00033 * 14 13 4 18 18 N 1.46892 * 109.47186 * 180.02562 * 17 14 13 19 19 C 1.46901 * 110.99864 * 293.95425 * 18 17 14 20 20 C 1.46904 * 111.00259 * 170.00105 * 18 17 14 21 21 C 1.52998 * 117.49904 * 248.74467 * 20 18 17 22 22 C 1.52998 * 117.49727 * 180.08414 * 20 18 17 23 23 H 4.40638 * 5.51425 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.46982 * 163.68509 * 3 2 1 25 25 H 1.08999 * 109.47263 * 43.68683 * 3 2 1 26 26 H 0.97008 * 120.00105 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.47093 * 149.99655 * 13 4 3 28 28 H 1.08997 * 109.47165 * 30.00269 * 13 4 3 29 29 H 0.96706 * 114.00086 * 59.99828 * 16 14 13 30 30 H 1.08995 * 109.46696 * 60.00126 * 17 14 13 31 31 H 1.09009 * 109.47037 * 299.99959 * 17 14 13 32 32 H 1.09000 * 109.47491 * 59.99735 * 19 18 17 33 33 H 1.09007 * 109.47309 * 180.02562 * 19 18 17 34 34 H 1.09008 * 109.47199 * 299.99870 * 19 18 17 35 35 H 1.08997 * 115.54766 * 34.41216 * 20 18 17 36 36 H 1.09004 * 117.49988 * 359.97438 * 21 20 18 37 37 H 1.08994 * 117.49903 * 145.02015 * 21 20 18 38 38 H 1.09002 * 117.49220 * 214.97759 * 22 20 18 39 39 H 1.08995 * 117.50279 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.3259 1.3420 5 6 3.3678 0.6741 2.2479 6 1 3.8683 0.4533 3.1791 7 6 2.9609 1.9717 1.9693 8 7 1.9700 2.1848 1.1297 9 14 3.8196 3.4155 2.7864 10 1 4.8930 2.9116 3.6804 11 1 4.4140 4.2916 1.7451 12 1 2.8349 4.1910 3.5828 13 6 3.3734 -1.7224 1.7148 14 6 2.0967 -2.3160 2.3135 15 1 1.7625 -1.6954 3.1448 16 8 1.0775 -2.3610 1.3127 17 6 2.3802 -3.7329 2.8166 18 7 1.1543 -4.3031 3.3909 19 6 0.7528 -3.5758 4.6024 20 6 1.3197 -5.7363 3.6677 21 6 0.5205 -6.7185 2.8090 22 6 0.1267 -6.4818 4.2692 23 1 -1.0500 0.0002 0.0001 24 1 3.0088 0.9871 -0.2887 25 1 3.0096 -0.7423 -0.7098 26 1 1.6859 3.0916 0.9348 27 1 4.1760 -1.7697 2.4508 28 1 3.6582 -2.2911 0.8296 29 1 1.3071 -2.8971 0.5413 30 1 3.1576 -3.6986 3.5798 31 1 2.7144 -4.3537 1.9852 32 1 0.5693 -2.5303 4.3546 33 1 -0.1572 -4.0187 5.0074 34 1 1.5487 -3.6389 5.3447 35 1 2.3164 -6.0416 3.9860 36 1 -0.1283 -6.3013 2.0389 37 1 0.9913 -7.6701 2.5627 38 1 0.3387 -7.2780 4.9829 39 1 -0.7808 -5.9089 4.4598 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289374614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:42 Heat of formation + Delta-G solvation = 76.654699 kcal Electronic energy + Delta-G solvation = -19190.125601 eV Core-core repulsion = 16330.002199 eV Total energy + Delta-G solvation = -2860.123401 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.67028 -37.05767 -35.13715 -33.63831 -31.31573 -31.21470 -28.89582 -26.59202 -25.83562 -24.52490 -22.29686 -21.68777 -20.42436 -20.20015 -17.36966 -16.61957 -16.17237 -15.64551 -15.07796 -14.98831 -14.51736 -14.11325 -13.72807 -13.35793 -13.26503 -12.94191 -12.61328 -12.25807 -11.72581 -11.42155 -11.29378 -11.27035 -11.17906 -10.82229 -10.59941 -10.54757 -10.26025 -10.20469 -10.02202 -9.95856 -9.33709 -8.59837 -8.50058 -8.11643 -8.07995 -6.94436 -5.72028 -3.08049 3.39267 3.47831 3.49514 3.76076 3.89165 4.41729 4.64396 4.84074 4.89614 4.94883 5.09326 5.21549 5.32914 5.37072 5.47726 5.57656 5.58652 5.71906 5.78996 5.85904 5.93229 5.98225 6.06983 6.13387 6.16912 6.20409 6.25896 6.55525 6.81281 6.89076 7.21083 7.30286 7.40965 7.69053 7.79585 8.31002 8.56917 9.17464 9.59914 9.84415 10.28338 11.29796 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.005607 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.483809 B = 4992.720656 C = 5394.033150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.080 4.080 3 C 0.273 3.727 4 N -0.581 5.581 5 C -0.264 4.264 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.882 5.882 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.293 1.293 13 C 0.121 3.879 14 C 0.088 3.912 15 H 0.093 0.907 16 O -0.525 6.525 17 C 0.027 3.973 18 N -0.501 5.501 19 C 0.026 3.974 20 C 0.004 3.996 21 C -0.164 4.164 22 C -0.178 4.178 23 H 0.181 0.819 24 H 0.091 0.909 25 H 0.030 0.970 26 H 0.252 0.748 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.351 0.649 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -14.492 2.455 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.083 4.083 3 C 0.148 3.852 4 N -0.300 5.300 5 C -0.393 4.393 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.525 5.525 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.220 1.220 13 C -0.007 4.007 14 C 0.025 3.975 15 H 0.111 0.889 16 O -0.326 6.326 17 C -0.102 4.102 18 N -0.225 5.225 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.202 4.202 22 C -0.215 4.215 23 H 0.198 0.802 24 H 0.109 0.891 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.195 0.805 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.485 -13.848 2.505 14.081 hybrid contribution 0.906 0.410 0.970 1.389 sum 0.421 -13.437 3.475 13.886 Atomic orbital electron populations 1.23843 0.94987 1.07742 1.04928 1.23760 0.94733 0.93902 0.95931 1.17819 0.83520 0.99095 0.84766 1.44184 1.75000 1.00163 1.10701 1.19221 1.32213 0.87018 1.00810 0.90726 1.24805 0.97164 0.97921 0.99712 1.70214 1.24242 1.19597 1.38491 0.86346 0.79425 0.83231 0.78552 1.20468 1.21566 1.22040 1.21529 0.94922 0.86649 0.97608 1.22818 0.91358 0.91459 0.91851 0.88928 1.86819 1.42100 1.73162 1.30528 1.22990 0.89945 0.98461 0.98818 1.61752 1.33351 0.99568 1.27798 1.22390 0.99431 0.99927 0.90382 1.22464 0.94868 0.88394 1.04761 1.23050 1.03572 0.99360 0.94192 1.23032 0.99249 1.02585 0.96677 0.80190 0.89090 0.95192 0.93685 0.92923 0.93916 0.80460 0.94705 0.91121 0.90444 0.91869 0.96132 0.89896 0.88084 0.89192 0.89103 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.18 18.51 29.55 0.55 -6.63 16 2 C -0.08 -2.00 9.32 -37.12 -0.35 -2.35 16 3 C 0.27 6.53 5.43 -6.83 -0.04 6.49 16 4 N -0.58 -13.96 2.48 -176.58 -0.44 -14.40 16 5 C -0.26 -7.04 9.70 -15.06 -0.15 -7.19 16 6 H 0.07 1.96 7.92 -52.49 -0.42 1.54 16 7 C 0.00 0.08 4.89 -17.43 -0.09 0.00 16 8 N -0.88 -25.34 9.16 55.49 0.51 -24.84 16 9 Si 0.89 21.55 29.62 -169.99 -5.03 16.52 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 C 0.12 2.33 5.37 -4.05 -0.02 2.31 16 14 C 0.09 1.61 3.08 -26.73 -0.08 1.53 16 15 H 0.09 2.02 6.55 -51.93 -0.34 1.68 16 16 O -0.52 -10.29 10.01 -35.23 -0.35 -10.64 16 17 C 0.03 0.39 4.58 -3.83 -0.02 0.38 16 18 N -0.50 -7.28 4.78 -234.88 -1.12 -8.40 16 19 C 0.03 0.38 9.18 60.07 0.55 0.93 16 20 C 0.00 0.05 5.27 -67.71 -0.36 -0.31 16 21 C -0.16 -1.76 10.46 -26.69 -0.28 -2.04 16 22 C -0.18 -1.86 9.73 -26.69 -0.26 -2.12 16 23 H 0.18 3.88 7.80 -54.09 -0.42 3.46 16 24 H 0.09 2.40 6.33 -51.93 -0.33 2.07 16 25 H 0.03 0.63 7.90 -51.93 -0.41 0.22 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.05 0.98 8.03 -51.93 -0.42 0.56 16 28 H 0.04 0.73 7.90 -51.93 -0.41 0.32 16 29 H 0.35 5.89 9.05 45.56 0.41 6.30 16 30 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.07 0.96 8.08 -51.92 -0.42 0.54 16 32 H 0.08 1.28 6.47 -51.93 -0.34 0.95 16 33 H 0.06 0.82 6.76 -51.93 -0.35 0.47 16 34 H 0.02 0.28 8.14 -51.92 -0.42 -0.15 16 35 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.08 7.26 -51.93 -0.38 0.70 16 LS Contribution 320.01 15.07 4.82 4.82 Total: -1.00 -30.29 320.01 -7.63 -37.92 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.48 Total: 8.03 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.53 Total: -9.01 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -1.05 Total: -47.63 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.35 Total: -10.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.29 -7.63 -37.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289374614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.577 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds