Wall clock time and date at job start Sun Mar 29 2020 23:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47147 * 283.68690 * 3 2 1 5 5 C 1.36939 * 120.00305 * 269.71591 * 4 3 2 6 6 H 1.07996 * 120.00686 * 189.40126 * 5 4 3 7 7 C 1.38818 * 119.99403 * 9.40282 * 5 4 3 8 8 N 1.31614 * 120.00285 * 24.57162 * 7 5 4 9 9 Si 1.86804 * 119.99693 * 204.56477 * 7 5 4 10 10 H 1.48503 * 109.46996 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46898 * 119.99918 * 9 7 5 12 12 H 1.48500 * 109.47302 * 240.00086 * 9 7 5 13 13 C 1.46497 * 119.99910 * 89.72003 * 4 3 2 14 14 C 1.52996 * 109.47148 * 269.99554 * 13 4 3 15 15 H 1.08997 * 109.47350 * 305.00245 * 14 13 4 16 16 O 1.42903 * 109.46801 * 65.00289 * 14 13 4 17 17 C 1.53005 * 109.47265 * 185.00033 * 14 13 4 18 18 N 1.46892 * 109.47186 * 180.02562 * 17 14 13 19 19 C 1.46901 * 110.99864 * 293.95425 * 18 17 14 20 20 C 1.46904 * 111.00259 * 170.00105 * 18 17 14 21 21 C 1.52998 * 117.49904 * 248.74467 * 20 18 17 22 22 C 1.52998 * 117.49727 * 180.08414 * 20 18 17 23 23 H 4.40638 * 5.51425 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.46982 * 163.68509 * 3 2 1 25 25 H 1.08999 * 109.47263 * 43.68683 * 3 2 1 26 26 H 0.97008 * 120.00105 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.47093 * 149.99655 * 13 4 3 28 28 H 1.08997 * 109.47165 * 30.00269 * 13 4 3 29 29 H 0.96706 * 114.00086 * 59.99828 * 16 14 13 30 30 H 1.08995 * 109.46696 * 60.00126 * 17 14 13 31 31 H 1.09009 * 109.47037 * 299.99959 * 17 14 13 32 32 H 1.09000 * 109.47491 * 59.99735 * 19 18 17 33 33 H 1.09007 * 109.47309 * 180.02562 * 19 18 17 34 34 H 1.09008 * 109.47199 * 299.99870 * 19 18 17 35 35 H 1.08997 * 115.54766 * 34.41216 * 20 18 17 36 36 H 1.09004 * 117.49988 * 359.97438 * 21 20 18 37 37 H 1.08994 * 117.49903 * 145.02015 * 21 20 18 38 38 H 1.09002 * 117.49220 * 214.97759 * 22 20 18 39 39 H 1.08995 * 117.50279 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.3259 1.3420 5 6 3.3678 0.6741 2.2479 6 1 3.8683 0.4533 3.1791 7 6 2.9609 1.9717 1.9693 8 7 1.9700 2.1848 1.1297 9 14 3.8196 3.4155 2.7864 10 1 4.8930 2.9116 3.6804 11 1 4.4140 4.2916 1.7451 12 1 2.8349 4.1910 3.5828 13 6 3.3734 -1.7224 1.7148 14 6 2.0967 -2.3160 2.3135 15 1 1.7625 -1.6954 3.1448 16 8 1.0775 -2.3610 1.3127 17 6 2.3802 -3.7329 2.8166 18 7 1.1543 -4.3031 3.3909 19 6 0.7528 -3.5758 4.6024 20 6 1.3197 -5.7363 3.6677 21 6 0.5205 -6.7185 2.8090 22 6 0.1267 -6.4818 4.2692 23 1 -1.0500 0.0002 0.0001 24 1 3.0088 0.9871 -0.2887 25 1 3.0096 -0.7423 -0.7098 26 1 1.6859 3.0916 0.9348 27 1 4.1760 -1.7697 2.4508 28 1 3.6582 -2.2911 0.8296 29 1 1.3071 -2.8971 0.5413 30 1 3.1576 -3.6986 3.5798 31 1 2.7144 -4.3537 1.9852 32 1 0.5693 -2.5303 4.3546 33 1 -0.1572 -4.0187 5.0074 34 1 1.5487 -3.6389 5.3447 35 1 2.3164 -6.0416 3.9860 36 1 -0.1283 -6.3013 2.0389 37 1 0.9913 -7.6701 2.5627 38 1 0.3387 -7.2780 4.9829 39 1 -0.7808 -5.9089 4.4598 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289374614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:42 Heat of formation + Delta-G solvation = 56.365082 kcal Electronic energy + Delta-G solvation = -19191.005425 eV Core-core repulsion = 16330.002199 eV Total energy + Delta-G solvation = -2861.003225 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.84353 -38.47335 -36.79811 -34.79583 -33.27767 -33.03785 -30.42928 -28.02724 -27.67479 -25.97566 -23.36548 -23.06437 -21.93835 -21.22283 -19.30583 -18.12681 -17.67853 -17.12231 -16.56357 -16.36015 -15.95759 -15.55967 -15.35780 -14.85496 -14.75945 -14.40677 -13.99973 -13.60097 -13.31449 -13.11793 -12.73776 -12.73040 -12.49833 -12.22842 -12.19257 -12.14867 -11.87218 -11.68896 -11.42665 -11.06171 -10.94139 -10.50040 -10.38564 -10.04670 -9.17948 -8.85713 -7.78543 -5.13866 1.46594 1.50243 1.58948 2.47908 2.69757 2.81755 2.90347 2.92759 3.30892 3.80473 3.87128 4.04663 4.10965 4.15662 4.26548 4.28694 4.32522 4.43498 4.52224 4.65673 4.72776 4.77868 4.82161 4.88320 4.97321 4.99685 5.10402 5.13012 5.35206 5.38615 5.44953 5.67439 5.85683 6.06743 6.25973 6.31410 7.15000 7.20777 7.68242 7.90627 8.29726 9.21779 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.005607 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.483809 B = 4992.720656 C = 5394.033150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.096 4.096 3 C 0.274 3.726 4 N -0.595 5.595 5 C -0.265 4.265 6 H 0.075 0.925 7 C -0.049 4.049 8 N -0.911 5.911 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.291 1.291 12 H -0.303 1.303 13 C 0.118 3.882 14 C 0.101 3.899 15 H 0.051 0.949 16 O -0.544 6.544 17 C 0.041 3.959 18 N -0.516 5.516 19 C 0.032 3.968 20 C -0.011 4.011 21 C -0.158 4.158 22 C -0.169 4.169 23 H 0.200 0.800 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.244 0.756 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.364 0.636 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.027 0.973 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -16.625 2.841 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.099 4.099 3 C 0.149 3.851 4 N -0.314 5.314 5 C -0.394 4.394 6 H 0.093 0.907 7 C -0.245 4.245 8 N -0.556 5.556 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.218 1.218 12 H -0.231 1.231 13 C -0.009 4.009 14 C 0.039 3.961 15 H 0.069 0.931 16 O -0.348 6.348 17 C -0.088 4.088 18 N -0.240 5.240 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.195 4.195 22 C -0.207 4.207 23 H 0.217 0.783 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.210 0.790 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.318 -16.024 2.900 16.288 hybrid contribution 0.640 0.980 0.856 1.450 sum 0.958 -15.044 3.756 15.535 Atomic orbital electron populations 1.24451 0.95893 1.07502 1.04753 1.24149 0.95416 0.94147 0.96166 1.17772 0.83132 0.98645 0.85530 1.44343 1.74983 1.01723 1.10383 1.19508 1.31034 0.87953 1.00943 0.90707 1.25442 0.97966 1.00030 1.01038 1.70369 1.25695 1.19138 1.40437 0.85404 0.78311 0.80324 0.77548 1.19273 1.21786 1.23104 1.21729 0.95417 0.84586 0.99135 1.22449 0.90068 0.93150 0.90430 0.93055 1.86778 1.42802 1.73842 1.31390 1.22739 0.90265 0.96212 0.99571 1.61677 1.33289 1.01121 1.27919 1.22292 1.00303 0.98307 0.90737 1.22548 0.96041 0.86847 1.06529 1.23087 1.02865 0.99648 0.93945 1.23097 0.98013 1.02458 0.97087 0.78287 0.91978 0.91883 0.94650 0.92198 0.91018 0.78987 0.94080 0.89225 0.93527 0.90717 0.95418 0.88831 0.89503 0.87023 0.86936 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.89 18.51 74.32 1.38 -13.52 16 2 C -0.10 -4.78 9.32 31.13 0.29 -4.49 16 3 C 0.27 13.05 5.43 84.57 0.46 13.50 16 4 N -0.59 -28.28 2.48 -712.57 -1.76 -30.04 16 5 C -0.26 -14.14 9.70 84.03 0.82 -13.32 16 6 H 0.08 3.91 7.92 -2.91 -0.02 3.88 16 7 C -0.05 -2.70 4.89 84.86 0.42 -2.29 16 8 N -0.91 -53.36 9.16 21.65 0.20 -53.16 16 9 Si 0.95 44.97 29.62 68.60 2.03 47.00 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 13 C 0.12 4.35 5.37 86.38 0.46 4.81 16 14 C 0.10 3.64 3.08 30.59 0.09 3.73 16 15 H 0.05 2.29 6.55 -2.39 -0.02 2.27 16 16 O -0.54 -20.95 10.01 -148.98 -1.49 -22.45 16 17 C 0.04 1.13 4.58 86.31 0.40 1.52 16 18 N -0.52 -14.19 4.78 -897.02 -4.28 -18.48 16 19 C 0.03 0.89 9.18 127.69 1.17 2.06 16 20 C -0.01 -0.24 5.27 44.91 0.24 0.00 16 21 C -0.16 -2.96 10.46 30.62 0.32 -2.64 16 22 C -0.17 -3.09 9.73 30.62 0.30 -2.79 16 23 H 0.20 8.51 7.80 -4.42 -0.03 8.47 16 24 H 0.06 3.32 6.33 -2.39 -0.02 3.31 16 25 H 0.06 2.52 7.90 -2.39 -0.02 2.51 16 26 H 0.24 14.15 8.31 -92.70 -0.77 13.38 16 27 H 0.06 2.12 8.03 -2.38 -0.02 2.10 16 28 H 0.07 2.23 7.90 -2.39 -0.02 2.21 16 29 H 0.36 11.62 9.05 -74.05 -0.67 10.95 16 30 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 31 H 0.09 2.14 8.08 -2.38 -0.02 2.13 16 32 H 0.05 1.59 6.47 -2.39 -0.02 1.57 16 33 H 0.07 1.88 6.76 -2.38 -0.02 1.86 16 34 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.56 16 39 H 0.09 1.79 7.26 -2.39 -0.02 1.78 16 Total: -1.00 -65.06 320.01 1.38 -63.69 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.35 Total: 26.85 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 6.34 Total: -13.41 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -5.85 Total: -101.68 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.49 Total: -22.45 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.06 1.38 -63.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289374614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.053 kcal (2) G-P(sol) polarization free energy of solvation -65.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds