Wall clock time and date at job start Sun Mar 29 2020 23:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46853 * 2 1 4 4 H 1.09000 * 109.47318 * 55.10154 * 3 2 1 5 5 C 1.50700 * 109.46649 * 175.09911 * 3 2 1 6 6 H 1.08008 * 119.99822 * 119.99930 * 5 3 2 7 7 C 1.37872 * 120.00255 * 299.99917 * 5 3 2 8 8 N 1.31510 * 119.99951 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00078 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47039 * 90.00051 * 9 7 5 11 11 H 1.48499 * 109.46911 * 210.00080 * 9 7 5 12 12 H 1.48500 * 109.46843 * 330.00141 * 9 7 5 13 13 N 1.46894 * 109.47079 * 295.09881 * 3 2 1 14 14 C 1.46900 * 111.00346 * 154.21395 * 13 3 2 15 15 C 1.50687 * 109.47780 * 185.21072 * 14 13 3 16 16 C 1.35360 * 126.75092 * 94.71143 * 15 14 13 17 17 N 1.35320 * 106.17265 * 179.85633 * 16 15 14 18 18 C 1.46496 * 125.86739 * 180.18809 * 17 16 15 19 19 C 1.52997 * 109.46968 * 275.29684 * 18 17 16 20 20 C 1.53009 * 109.47036 * 35.29340 * 18 17 16 21 21 N 1.28720 * 108.26149 * 0.41714 * 17 16 15 22 22 N 1.28624 * 110.17983 * 359.73541 * 21 17 16 23 23 H 1.08998 * 109.47026 * 300.27185 * 1 2 3 24 24 H 1.08993 * 109.47083 * 60.27188 * 1 2 3 25 25 H 1.08995 * 109.47142 * 180.27454 * 1 2 3 26 26 H 1.08998 * 109.46595 * 240.00340 * 2 1 3 27 27 H 1.08996 * 109.47152 * 119.99777 * 2 1 3 28 28 H 0.97002 * 120.00272 * 180.02562 * 8 7 5 29 29 H 1.00903 * 111.00213 * 278.17452 * 13 3 2 30 30 H 1.09007 * 109.46592 * 65.20684 * 14 13 3 31 31 H 1.09003 * 109.46585 * 305.21645 * 14 13 3 32 32 H 1.07995 * 126.91004 * 0.02562 * 16 15 14 33 33 H 1.08991 * 109.47558 * 155.29333 * 18 17 16 34 34 H 1.09001 * 109.47115 * 299.99641 * 19 18 17 35 35 H 1.08994 * 109.47618 * 59.99848 * 19 18 17 36 36 H 1.09003 * 109.47057 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47358 * 60.00172 * 20 18 17 38 38 H 1.08996 * 109.46885 * 180.02562 * 20 18 17 39 39 H 1.09003 * 109.46855 * 299.99967 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6068 1.9811 0.8428 5 6 3.5421 1.4443 0.1214 6 1 4.1462 1.8893 -0.6556 7 6 4.1453 0.8777 1.2242 8 7 3.4098 0.3354 2.1699 9 14 6.0072 0.8805 1.3749 10 1 6.4451 2.1130 2.0780 11 1 6.4431 -0.3110 2.1466 12 1 6.6136 0.8417 0.0199 13 7 1.6493 2.1000 -1.2542 14 6 1.5526 3.5552 -1.0779 15 6 1.0279 4.1809 -2.3443 16 6 -0.2610 4.4864 -2.6231 17 7 -0.2601 5.0290 -3.8628 18 6 -1.4362 5.5175 -4.5867 19 6 -2.1134 4.3497 -5.3067 20 6 -2.4196 6.1458 -3.5971 21 7 0.9511 5.0375 -4.2985 22 7 1.7434 4.5384 -3.4166 23 1 -0.3633 0.5180 0.8875 24 1 -0.3633 0.5096 -0.8924 25 1 -0.3633 -1.0276 0.0049 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8341 -0.0628 2.9460 29 1 2.2893 1.8677 -1.9989 30 1 2.5395 3.9604 -0.8542 31 1 0.8735 3.7770 -0.2546 32 1 -1.1173 4.3311 -1.9836 33 1 -1.1285 6.2655 -5.3173 34 1 -1.4129 3.9021 -6.0117 35 1 -2.4213 3.6017 -4.5761 36 1 -2.9883 4.7133 -5.8457 37 1 -1.9373 6.9778 -3.0841 38 1 -3.2949 6.5089 -4.1357 39 1 -2.7275 5.3978 -2.8664 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289890732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:47 Heat of formation + Delta-G solvation = 83.789680 kcal Electronic energy + Delta-G solvation = -18625.652848 eV Core-core repulsion = 15798.131593 eV Total energy + Delta-G solvation = -2827.521254 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.98422 -36.73777 -36.03943 -33.03294 -31.54733 -31.09362 -30.10148 -27.77716 -26.71519 -24.56460 -23.73362 -22.47310 -20.94412 -20.35804 -19.44260 -17.13889 -16.60674 -16.16317 -14.96354 -14.78142 -14.62592 -14.18482 -13.83273 -13.42362 -13.34908 -12.85989 -12.69634 -12.43775 -12.21923 -11.93821 -11.81139 -11.57081 -11.34182 -11.14480 -10.98450 -10.81258 -10.65466 -10.43113 -10.11226 -9.83398 -9.57080 -9.53595 -9.03186 -8.81269 -8.33576 -7.22428 -5.95485 -4.07720 1.85826 2.43704 2.91038 3.32025 3.38863 3.43761 4.12698 4.42310 4.45024 4.59771 4.68807 5.06131 5.15888 5.17896 5.26071 5.30090 5.35897 5.46944 5.60688 5.73982 5.74738 5.89146 6.27178 6.40956 6.52914 6.55838 6.63819 6.72671 6.82740 7.15102 7.19035 7.46498 7.61738 7.82362 8.12398 8.18796 8.35906 8.68616 8.84159 9.04809 9.60056 11.04733 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031030 B = 0.004725 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.133577 B = 5924.165020 C = 6475.528911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.148 3.852 15 C 0.003 3.997 16 C -0.041 4.041 17 N -0.294 5.294 18 C 0.139 3.861 19 C -0.165 4.165 20 C -0.165 4.165 21 N -0.099 5.099 22 N -0.266 5.266 23 H 0.036 0.964 24 H 0.047 0.953 25 H 0.024 0.976 26 H 0.030 0.970 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.184 0.816 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.636 9.081 -9.802 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.314 5.314 14 C 0.016 3.984 15 C -0.136 4.136 16 C -0.192 4.192 17 N -0.089 5.089 18 C 0.038 3.962 19 C -0.223 4.223 20 C -0.223 4.223 21 N -0.078 5.078 22 N -0.133 5.133 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.202 0.798 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.382 9.263 -10.708 19.482 hybrid contribution 1.153 -0.054 1.025 1.544 sum -12.229 9.209 -9.683 18.114 Atomic orbital electron populations 1.21698 0.99102 0.98306 1.00294 1.21495 0.92022 0.99205 1.01716 1.19158 0.92935 0.91211 0.85914 0.94892 1.21908 0.92765 1.38055 1.05649 0.92637 1.24913 0.97927 0.94932 0.95675 1.69874 1.34820 1.38374 1.09446 0.86654 0.86111 0.77456 0.78155 1.20749 1.21236 1.19917 1.60919 1.55460 1.04757 1.10305 1.20002 0.99440 0.90009 0.88952 1.22296 0.90241 1.03044 0.97975 1.23228 1.00879 1.05804 0.89299 1.47494 1.08100 1.40823 1.12478 1.21589 0.82395 0.97581 0.94662 1.22220 1.01226 0.97637 1.01240 1.22204 0.98845 1.01779 0.99480 1.78221 0.87099 1.20193 1.22242 1.75055 1.25537 1.12861 0.99852 0.94485 0.93402 0.95732 0.95105 0.89087 0.92943 0.85079 0.93445 0.90476 0.79849 0.87257 0.91308 0.91257 0.90029 0.91274 0.89702 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.16 0.36 -2.41 16 2 C -0.11 -2.53 5.45 -26.72 -0.15 -2.68 16 3 C 0.22 5.31 1.98 -68.86 -0.14 5.17 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.54 -14.84 8.47 -34.44 -0.29 -15.13 16 6 H 0.06 1.53 7.73 -52.48 -0.41 1.13 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -25.01 11.29 55.43 0.63 -24.38 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -14.69 5.66 -109.22 -0.62 -15.31 16 14 C 0.15 2.86 6.07 -4.98 -0.03 2.83 16 15 C 0.00 0.05 6.80 -82.78 -0.56 -0.52 16 16 C -0.04 -0.58 10.62 -17.04 -0.18 -0.77 16 17 N -0.29 -3.91 3.25 -54.76 -0.18 -4.09 16 18 C 0.14 1.17 3.85 -67.93 -0.26 0.91 16 19 C -0.16 -1.20 9.52 37.16 0.35 -0.85 16 20 C -0.16 -0.98 8.84 37.16 0.33 -0.65 16 21 N -0.10 -1.69 13.16 60.35 0.79 -0.90 16 22 N -0.27 -5.15 12.41 33.29 0.41 -4.74 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.93 7.76 -51.93 -0.40 0.53 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 7.51 8.45 -39.29 -0.33 7.18 16 30 H 0.05 1.01 8.11 -51.93 -0.42 0.58 16 31 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 32 H 0.18 2.01 7.31 -52.49 -0.38 1.63 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.43 7.18 -51.93 -0.37 0.05 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -30.74 323.02 -6.15 -36.89 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.38 Total: 3.54 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.66 Total: -12.33 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 1.04 Total: -49.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.74 -6.15 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289890732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.679 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds