Wall clock time and date at job start Sun Mar 29 2020 23:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 H 1.08996 * 109.47216 * 304.24758 * 3 2 1 5 5 C 1.50700 * 109.46972 * 184.25098 * 3 2 1 6 6 H 1.08004 * 120.00168 * 240.00044 * 5 3 2 7 7 C 1.37884 * 120.00415 * 59.99709 * 5 3 2 8 8 N 1.31520 * 119.99393 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00203 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47155 * 60.00287 * 9 7 5 11 11 H 1.48501 * 109.47418 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47609 * 300.00210 * 9 7 5 13 13 N 1.46895 * 109.46964 * 64.25196 * 3 2 1 14 14 C 1.46902 * 110.99887 * 205.86877 * 13 3 2 15 15 C 1.50693 * 109.47366 * 174.80782 * 14 13 3 16 16 C 1.35348 * 126.75265 * 95.00112 * 15 14 13 17 17 N 1.35314 * 106.17830 * 180.25046 * 16 15 14 18 18 C 1.46498 * 125.87348 * 179.77453 * 17 16 15 19 19 C 1.53003 * 109.46732 * 274.99420 * 18 17 16 20 20 C 1.52995 * 109.47042 * 34.99331 * 18 17 16 21 21 N 1.28717 * 108.26041 * 359.61813 * 17 16 15 22 22 N 1.28639 * 110.17867 * 0.39453 * 21 17 16 23 23 H 1.09006 * 109.46818 * 294.89866 * 1 2 3 24 24 H 1.08993 * 109.47083 * 54.89700 * 1 2 3 25 25 H 1.08998 * 109.47293 * 174.89981 * 1 2 3 26 26 H 1.09004 * 109.46734 * 240.00307 * 2 1 3 27 27 H 1.08999 * 109.47576 * 120.00245 * 2 1 3 28 28 H 0.96998 * 119.99356 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00380 * 81.91592 * 13 3 2 30 30 H 1.08997 * 109.47206 * 54.80257 * 14 13 3 31 31 H 1.09007 * 109.47171 * 294.81064 * 14 13 3 32 32 H 1.08001 * 126.91203 * 359.97438 * 16 15 14 33 33 H 1.08998 * 109.47400 * 154.99337 * 18 17 16 34 34 H 1.09005 * 109.47139 * 60.00202 * 19 18 17 35 35 H 1.09006 * 109.46715 * 179.97438 * 19 18 17 36 36 H 1.08992 * 109.47097 * 299.99814 * 19 18 17 37 37 H 1.09006 * 109.47428 * 180.02562 * 20 18 17 38 38 H 1.09005 * 109.47391 * 300.00142 * 20 18 17 39 39 H 1.08999 * 109.47248 * 60.00552 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9778 -0.8494 5 6 3.5433 1.4438 -0.1053 6 1 4.1391 1.8918 0.6763 7 6 4.1583 0.8730 -1.1995 8 7 3.4329 0.3279 -2.1515 9 14 6.0216 0.8753 -1.3303 10 1 6.6000 0.1464 -0.1730 11 1 6.4302 0.2062 -2.5915 12 1 6.5163 2.2755 -1.3307 13 7 1.6360 2.1047 1.2474 14 6 1.5393 3.5590 1.0641 15 6 1.0016 4.1894 2.3228 16 6 1.7253 4.7275 3.3320 17 7 0.8294 5.1650 4.2468 18 6 1.1500 5.8185 5.5181 19 6 1.4213 4.7549 6.5840 20 6 2.3929 6.6933 5.3426 21 7 -0.3533 4.9114 3.8065 22 7 -0.2849 4.3269 2.6626 23 1 -0.3633 0.4327 0.9322 24 1 -0.3633 0.5909 -0.8407 25 1 -0.3634 -1.0236 -0.0914 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.8655 -0.0733 -2.9213 29 1 2.2687 1.8764 1.9994 30 1 0.8681 3.7766 0.2333 31 1 2.5278 3.9645 0.8482 32 1 2.8015 4.7906 3.3965 33 1 0.3099 6.4392 5.8297 34 1 2.2615 4.1343 6.2724 35 1 1.6604 5.2411 7.5299 36 1 0.5359 4.1317 6.7090 37 1 2.6318 7.1792 6.2887 38 1 3.2331 6.0727 5.0310 39 1 2.1996 7.4511 4.5833 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289890736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:51 Heat of formation + Delta-G solvation = 84.433077 kcal Electronic energy + Delta-G solvation = -18632.754538 eV Core-core repulsion = 15805.261183 eV Total energy + Delta-G solvation = -2827.493355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.98388 -36.73236 -36.05404 -33.05038 -31.55277 -31.10675 -30.05370 -27.78001 -26.72372 -24.60263 -23.71391 -22.44172 -20.86655 -20.47652 -19.42851 -17.19480 -16.58179 -16.16385 -14.97817 -14.82880 -14.61591 -14.04889 -13.84693 -13.49400 -13.32656 -12.95601 -12.69168 -12.61633 -12.10785 -11.86292 -11.75363 -11.56470 -11.29334 -11.16179 -11.02431 -10.91242 -10.63639 -10.41908 -10.10849 -9.81833 -9.55403 -9.50046 -9.04482 -8.82875 -8.36254 -7.21113 -5.98025 -4.11557 1.84214 2.43206 2.92148 3.27492 3.33561 3.34680 4.12359 4.39432 4.41807 4.59444 4.68088 5.05469 5.14690 5.16940 5.25307 5.27539 5.34850 5.41718 5.58247 5.73124 5.77838 5.90110 6.30489 6.45096 6.53165 6.60724 6.63355 6.81732 6.82238 7.20084 7.28694 7.48556 7.63329 7.80380 8.12269 8.16013 8.35466 8.67588 8.86145 9.01307 9.55813 11.01973 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.005124 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.594334 B = 5462.921624 C = 6239.222333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.547 4.547 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.148 3.852 15 C 0.005 3.995 16 C -0.054 4.054 17 N -0.293 5.293 18 C 0.139 3.861 19 C -0.165 4.165 20 C -0.165 4.165 21 N -0.100 5.100 22 N -0.254 5.254 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.023 0.977 26 H 0.090 0.910 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.326 0.674 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.183 0.817 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 10.557 14.467 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.586 4.586 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.310 5.310 14 C 0.016 3.984 15 C -0.133 4.133 16 C -0.205 4.205 17 N -0.088 5.088 18 C 0.038 3.962 19 C -0.223 4.223 20 C -0.223 4.223 21 N -0.079 5.079 22 N -0.121 5.121 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.200 0.800 33 H 0.128 0.872 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.716 10.465 14.461 18.056 hybrid contribution 3.294 0.178 -0.207 3.305 sum 0.578 10.643 14.254 17.799 Atomic orbital electron populations 1.21689 0.98855 0.98189 1.00654 1.21484 0.92210 0.99061 1.01550 1.19174 0.92615 0.91279 0.86088 0.94755 1.21826 0.92659 1.38301 1.05852 0.92928 1.24929 0.97871 0.94986 0.95659 1.69875 1.34952 1.37826 1.09477 0.86722 0.86141 0.78108 0.77359 1.20357 1.21239 1.20441 1.60830 1.55408 1.04884 1.09893 1.20009 0.98311 0.89818 0.90232 1.22293 0.89488 1.02320 0.99226 1.23282 0.98339 1.06764 0.92065 1.47479 1.05288 1.39926 1.16096 1.21590 1.00190 0.94500 0.79953 1.22222 1.03494 0.98743 0.97864 1.22205 0.96367 0.99896 1.03866 1.78247 1.04588 1.16834 1.08184 1.75068 1.19363 1.12993 1.04690 0.93317 0.94368 0.95786 0.89192 0.95199 0.92799 0.85776 0.90276 0.93631 0.79969 0.87216 0.91330 0.90010 0.91263 0.89696 0.90999 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.73 37.16 0.36 -2.61 16 2 C -0.10 -2.55 5.45 -26.73 -0.15 -2.70 16 3 C 0.22 5.35 1.98 -68.87 -0.14 5.21 16 4 H 0.03 0.94 7.70 -51.93 -0.40 0.54 16 5 C -0.55 -14.43 8.47 -34.44 -0.29 -14.72 16 6 H 0.05 1.35 7.73 -52.48 -0.41 0.95 16 7 C 0.07 1.84 5.29 -17.81 -0.09 1.75 16 8 N -0.88 -24.77 11.30 55.43 0.63 -24.14 16 9 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -14.62 5.72 -109.23 -0.62 -15.24 16 14 C 0.15 2.86 6.07 -4.98 -0.03 2.83 16 15 C 0.01 0.09 6.80 -82.78 -0.56 -0.47 16 16 C -0.05 -0.76 10.62 -17.05 -0.18 -0.94 16 17 N -0.29 -3.91 3.25 -54.77 -0.18 -4.08 16 18 C 0.14 1.18 3.85 -67.93 -0.26 0.92 16 19 C -0.16 -1.21 9.52 37.16 0.35 -0.86 16 20 C -0.17 -1.02 8.83 37.15 0.33 -0.69 16 21 N -0.10 -1.70 13.17 60.35 0.79 -0.91 16 22 N -0.25 -4.93 12.41 33.28 0.41 -4.52 16 23 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.33 6.85 8.45 -39.29 -0.33 6.52 16 30 H 0.08 1.61 7.92 -51.93 -0.41 1.20 16 31 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.18 2.02 7.30 -52.49 -0.38 1.64 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.45 7.17 -51.93 -0.37 0.07 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -30.59 323.15 -6.17 -36.76 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.38 Total: 3.85 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.66 Total: -12.28 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 1.03 Total: -48.90 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.59 -6.17 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289890736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.190 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds