Wall clock time and date at job start Sun Mar 29 2020 23:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46847 * 110.99957 * 2 1 4 4 C 1.50138 * 110.27607 * 287.54174 * 3 2 1 5 5 C 1.29824 * 123.28394 * 342.94601 * 4 3 2 6 6 C 1.50699 * 118.55067 * 180.65798 * 5 4 3 7 7 N 1.46501 * 109.47247 * 94.73162 * 6 5 4 8 8 C 1.34773 * 119.99760 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00584 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99979 * 179.97438 * 8 7 6 11 11 C 1.52998 * 109.47330 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47458 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99575 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00362 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00012 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99865 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47162 * 90.00257 * 16 14 12 18 18 H 1.48508 * 109.46954 * 209.99925 * 16 14 12 19 19 H 1.48495 * 109.47262 * 330.00226 * 16 14 12 20 20 C 1.50306 * 122.89234 * 0.37239 * 5 4 3 21 21 C 1.47245 * 111.00146 * 237.07446 * 2 1 3 22 22 H 1.09008 * 109.46949 * 182.92859 * 1 2 3 23 23 H 1.09002 * 109.47556 * 302.92631 * 1 2 3 24 24 H 1.08999 * 109.47399 * 62.93238 * 1 2 3 25 25 H 1.08999 * 109.33341 * 47.78794 * 3 2 1 26 26 H 1.09000 * 109.33955 * 167.45407 * 3 2 1 27 27 H 1.08000 * 118.35721 * 162.96624 * 4 3 2 28 28 H 1.09009 * 109.47121 * 214.73129 * 6 5 4 29 29 H 1.09000 * 109.47246 * 334.72694 * 6 5 4 30 30 H 0.96997 * 120.00013 * 359.97438 * 7 6 5 31 31 H 1.08997 * 109.47127 * 300.00231 * 10 8 7 32 32 H 1.08997 * 109.46507 * 60.00283 * 10 8 7 33 33 H 1.09003 * 109.47246 * 300.00726 * 11 10 8 34 34 H 1.09000 * 109.46885 * 60.00223 * 11 10 8 35 35 H 0.97000 * 119.99659 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.42717 * 103.57879 * 20 5 4 37 37 H 1.08999 * 109.42986 * 223.47543 * 20 5 4 38 38 H 1.09001 * 109.63105 * 294.88217 * 21 2 1 39 39 H 1.08997 * 109.80426 * 174.37462 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 1.7853 2.0088 -1.3429 5 6 1.5191 1.3329 -2.4189 6 6 1.3432 2.0818 -3.7147 7 7 2.6138 2.1015 -4.4438 8 6 2.6956 2.7197 -5.6385 9 8 1.7176 3.2602 -6.1100 10 6 4.0027 2.7405 -6.3883 11 6 3.8237 3.4996 -7.7046 12 6 5.1307 3.5199 -8.4546 13 1 6.0017 3.0390 -8.0346 14 6 5.2144 4.1522 -9.6769 15 7 6.3549 4.1694 -10.3316 16 14 3.7079 4.9846 -10.4029 17 1 3.6592 6.3992 -9.9536 18 1 3.7831 4.9384 -11.8854 19 1 2.4840 4.2780 -9.9470 20 6 1.3849 -0.1641 -2.4302 21 6 1.9966 -0.7472 -1.1538 22 1 -0.3633 -1.0264 0.0525 23 1 -0.3634 0.5586 0.8626 24 1 -0.3634 0.4676 -0.9151 25 1 1.4793 1.9555 0.7618 26 1 3.0618 1.3482 0.2234 27 1 1.8599 3.0836 -1.4175 28 1 0.5843 1.5864 -4.3205 29 1 1.0294 3.1041 -3.5039 30 1 3.3961 1.6695 -4.0666 31 1 4.7612 3.2365 -5.7826 32 1 4.3171 1.7183 -6.5987 33 1 3.0653 3.0032 -8.3100 34 1 3.5091 4.5219 -7.4945 35 1 6.4136 4.6140 -11.1917 36 1 0.3298 -0.4331 -2.4823 37 1 1.9054 -0.5683 -3.2984 38 1 1.7246 -1.7989 -1.0645 39 1 3.0818 -0.6514 -1.1909 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291880965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:24 Heat of formation + Delta-G solvation = -27.526354 kcal Electronic energy + Delta-G solvation = -18167.560247 eV Core-core repulsion = 15302.919217 eV Total energy + Delta-G solvation = -2864.641031 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16833 -39.06978 -35.42713 -33.47562 -32.63298 -31.30553 -31.22636 -28.40368 -26.64688 -25.07607 -23.88768 -22.09923 -21.16258 -19.77474 -17.96762 -17.25202 -16.44899 -15.96354 -15.88472 -15.36898 -15.19197 -14.78904 -14.36086 -14.08925 -13.75077 -13.23109 -13.07779 -12.82290 -12.64288 -12.55079 -12.23876 -12.00897 -11.85653 -11.54326 -11.41538 -11.02868 -10.95431 -10.16629 -10.04890 -9.80217 -9.56358 -9.19205 -9.02124 -8.89560 -8.68743 -8.50662 -6.03093 -4.01824 1.67743 3.11652 3.37878 3.44329 3.55545 3.58691 3.67415 4.38407 4.42347 4.50988 4.64792 4.77859 4.90303 5.09934 5.15981 5.24377 5.32091 5.32404 5.40521 5.41125 5.48040 5.54330 5.60667 5.64388 5.76177 6.07803 6.09526 6.11123 6.50983 6.59285 6.60392 6.69230 6.71171 7.36434 7.43499 7.75625 7.80382 8.50045 8.64816 8.99974 9.60013 11.09768 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.052763 B = 0.003480 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.543301 B = 8043.724621 C = 8233.320865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.079 3.921 4 C -0.169 4.169 5 C -0.135 4.135 6 C 0.155 3.845 7 N -0.737 5.737 8 C 0.509 3.491 9 O -0.542 6.542 10 C -0.122 4.122 11 C 0.002 3.998 12 C -0.525 4.525 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.904 5.904 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.121 4.121 21 C 0.051 3.949 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.399 0.601 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.023 0.977 34 H 0.019 0.981 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 -9.314 22.136 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.255 5.255 3 C -0.049 4.049 4 C -0.190 4.190 5 C -0.135 4.135 6 C 0.031 3.969 7 N -0.391 5.391 8 C 0.298 3.702 9 O -0.418 6.418 10 C -0.161 4.161 11 C -0.036 4.036 12 C -0.563 4.563 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.543 5.543 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.160 4.160 21 C -0.077 4.077 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.719 -9.095 22.060 26.158 hybrid contribution -0.624 0.773 -1.089 1.474 sum -11.343 -8.322 20.971 25.253 Atomic orbital electron populations 1.22463 0.87502 1.02160 1.01111 1.62746 1.08359 1.13270 1.41160 1.21156 1.01430 0.88262 0.94088 1.22931 0.99762 1.00676 0.95614 1.21028 1.02184 0.95569 0.94758 1.20232 0.87365 0.99407 0.89889 1.46201 1.12520 1.59008 1.21373 1.21582 0.92002 0.76572 0.80074 1.90652 1.39107 1.44526 1.67507 1.21667 0.92386 1.03309 0.98781 1.19367 0.97737 0.95458 0.91069 1.21115 0.95606 1.35837 1.03723 0.90935 1.24975 0.95863 0.95676 0.96753 1.69916 1.25020 1.44291 1.15049 0.86790 0.84381 0.80421 0.77929 1.20240 1.21424 1.18549 1.21061 1.02326 0.92323 1.00260 1.22291 1.00135 0.98043 0.87259 0.91429 0.91505 0.94549 0.89702 0.89163 0.86965 0.91453 0.91495 0.76731 0.89633 0.89605 0.95845 0.96300 0.92713 0.90403 0.89983 0.90097 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 8.91 60.06 0.53 0.65 16 2 N -0.53 -4.18 5.29 -244.42 -1.29 -5.48 16 3 C 0.08 0.58 5.94 -5.28 -0.03 0.55 16 4 C -0.17 -1.45 9.06 -35.97 -0.33 -1.77 16 5 C -0.13 -1.25 4.63 -100.93 -0.47 -1.72 16 6 C 0.15 1.89 5.72 -5.19 -0.03 1.86 16 7 N -0.74 -10.00 5.55 -61.47 -0.34 -10.34 16 8 C 0.51 9.40 7.83 -10.98 -0.09 9.32 16 9 O -0.54 -12.25 15.98 5.56 0.09 -12.16 16 10 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 11 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 12 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 16 Si 0.88 22.78 27.47 -169.99 -4.67 18.11 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 20 C -0.12 -0.98 5.24 -28.03 -0.15 -1.12 16 21 C 0.05 0.37 6.06 -3.59 -0.02 0.35 16 22 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 23 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 24 H 0.04 0.28 5.68 -51.93 -0.29 -0.01 16 25 H 0.08 0.55 7.98 -51.93 -0.41 0.14 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.11 0.98 7.81 -52.49 -0.41 0.57 16 28 H 0.07 0.88 8.13 -51.92 -0.42 0.46 16 29 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 30 H 0.40 4.39 8.46 -40.82 -0.35 4.04 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 34 H 0.02 0.49 7.52 -51.93 -0.39 0.10 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.08 0.62 6.94 -51.93 -0.36 0.26 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 LS Contribution 315.30 15.07 4.75 4.75 Total: -1.00 -33.83 315.30 -8.32 -42.15 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.38 Total: -1.59 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.25 Total: -8.03 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.86 Total: -43.24 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.83 -8.32 -42.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291880965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.626 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds