Wall clock time and date at job start Sun Mar 29 2020 23:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47459 * 2 1 4 4 C 1.36937 * 119.99880 * 95.52494 * 3 2 1 5 5 H 1.07999 * 119.99870 * 39.14926 * 4 3 2 6 6 C 1.38809 * 120.00007 * 218.86521 * 4 3 2 7 7 N 1.31623 * 119.99946 * 210.79114 * 6 4 3 8 8 Si 1.86795 * 120.00232 * 30.79244 * 6 4 3 9 9 H 1.48505 * 109.46949 * 94.61025 * 8 6 4 10 10 H 1.48496 * 109.47216 * 214.61349 * 8 6 4 11 11 H 1.48497 * 109.46924 * 334.61012 * 8 6 4 12 12 C 1.46504 * 120.00045 * 275.53614 * 3 2 1 13 13 C 1.50705 * 109.46517 * 275.96321 * 12 3 2 14 14 N 1.30711 * 125.52529 * 269.68721 * 13 12 3 15 15 N 1.40438 * 106.79279 * 179.86397 * 14 13 12 16 16 H 0.97000 * 126.82720 * 180.16165 * 15 14 13 17 17 C 1.34430 * 106.35163 * 0.40132 * 15 14 13 18 18 C 1.50707 * 125.95985 * 179.77646 * 17 15 14 19 19 C 1.52994 * 109.47312 * 75.00416 * 18 17 15 20 20 C 1.53002 * 109.46851 * 195.00331 * 18 17 15 21 21 C 1.53003 * 109.47081 * 315.00177 * 18 17 15 22 22 N 1.30832 * 108.07984 * 359.76139 * 17 15 14 23 23 H 1.08994 * 109.46996 * 181.07221 * 1 2 3 24 24 H 1.08995 * 109.46973 * 301.07662 * 1 2 3 25 25 H 1.09003 * 109.46608 * 61.07626 * 1 2 3 26 26 H 1.09001 * 109.47546 * 240.00060 * 2 1 3 27 27 H 1.09004 * 109.47184 * 119.99822 * 2 1 3 28 28 H 0.96999 * 120.00305 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46697 * 35.96203 * 12 3 2 30 30 H 1.08997 * 109.47032 * 155.96365 * 12 3 2 31 31 H 1.09004 * 109.47124 * 59.99469 * 19 18 17 32 32 H 1.08997 * 109.47359 * 179.97438 * 19 18 17 33 33 H 1.09001 * 109.46750 * 299.99789 * 19 18 17 34 34 H 1.08995 * 109.47355 * 59.99733 * 20 18 17 35 35 H 1.08997 * 109.46839 * 180.02562 * 20 18 17 36 36 H 1.08996 * 109.47437 * 299.99817 * 20 18 17 37 37 H 1.08997 * 109.46997 * 60.00402 * 21 18 17 38 38 H 1.09005 * 109.46565 * 180.02562 * 21 18 17 39 39 H 1.09001 * 109.46867 * 299.99724 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3543 1.9886 1.1804 5 1 2.8644 1.4283 1.9500 6 6 2.0445 3.3261 1.3855 7 7 2.8166 4.0711 2.1479 8 14 0.5318 4.0686 0.5796 9 1 -0.6100 4.0167 1.5277 10 1 0.8084 5.4812 0.2146 11 1 0.1944 3.2982 -0.6443 12 6 2.1472 2.1126 -1.2628 13 6 3.4682 1.7763 -1.9055 14 7 4.5900 2.4204 -1.7180 15 7 5.5631 1.7767 -2.4995 16 1 6.5002 2.0159 -2.5747 17 6 4.9368 0.7662 -3.1271 18 6 5.5712 -0.2099 -4.0843 19 6 6.4160 -1.2165 -3.3009 20 6 4.4775 -0.9523 -4.8549 21 6 6.4638 0.5483 -5.0688 22 7 3.6806 0.7777 -2.7617 23 1 -0.3633 -1.0274 0.0192 24 1 -0.3633 0.5304 0.8801 25 1 -0.3633 0.4971 -0.8995 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.5999 5.0056 2.2916 29 1 1.3349 1.8285 -1.9317 30 1 2.1001 3.1841 -1.0685 31 1 5.7801 -1.7566 -2.5994 32 1 6.8744 -1.9227 -3.9932 33 1 7.1951 -0.6876 -2.7520 34 1 3.8756 -0.2351 -5.4129 35 1 4.9363 -1.6585 -5.5468 36 1 3.8416 -1.4924 -4.1535 37 1 7.2429 1.0771 -4.5198 38 1 6.9222 -0.1577 -5.7614 39 1 5.8618 1.2654 -5.6270 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292594905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:21 Heat of formation + Delta-G solvation = 93.818559 kcal Electronic energy + Delta-G solvation = -19317.809396 eV Core-core repulsion = 16490.723026 eV Total energy + Delta-G solvation = -2827.086369 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.60840 -36.97834 -35.98934 -32.17263 -31.85017 -30.55038 -29.12066 -27.50729 -27.32324 -26.22711 -23.66341 -22.92102 -20.77504 -19.47386 -19.22618 -17.37519 -16.60570 -15.30077 -15.22956 -14.76458 -14.31231 -14.16816 -13.73284 -13.51402 -13.21443 -12.52837 -12.42375 -12.29049 -12.08286 -11.93211 -11.81523 -11.63037 -11.28689 -11.18550 -11.12599 -10.89410 -10.65621 -10.52062 -10.17472 -9.94238 -9.61422 -9.36939 -9.34263 -8.82143 -8.42906 -6.82590 -6.00857 -3.34444 2.20519 3.14610 3.39687 3.51716 3.54651 3.57757 4.21414 4.59495 4.60954 4.77781 4.97171 5.14232 5.34749 5.37380 5.43150 5.46793 5.54044 5.58002 5.71637 5.80677 5.85760 5.92753 6.05189 6.12908 6.29020 6.34079 6.37651 6.44998 6.63992 6.68197 6.89119 6.96312 7.13970 7.17559 7.56041 8.07165 8.45407 8.80689 9.01861 9.75278 10.18548 11.14676 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.006603 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.104414 B = 4239.435905 C = 4669.787683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.143 3.857 3 N -0.586 5.586 4 C -0.277 4.277 5 H 0.073 0.927 6 C 0.050 3.950 7 N -0.878 5.878 8 Si 0.852 3.148 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.259 1.259 12 C 0.233 3.767 13 C 0.223 3.777 14 N -0.293 5.293 15 N -0.494 5.494 16 H 0.429 0.571 17 C 0.271 3.729 18 C 0.014 3.986 19 C -0.140 4.140 20 C -0.127 4.127 21 C -0.145 4.145 22 N -0.532 5.532 23 H 0.040 0.960 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 -9.096 -14.527 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 N -0.307 5.307 4 C -0.405 4.405 5 H 0.090 0.910 6 C -0.153 4.153 7 N -0.517 5.517 8 Si 0.679 3.321 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.184 1.184 12 C 0.104 3.896 13 C -0.062 4.062 14 N -0.121 5.121 15 N -0.211 5.211 16 H 0.273 0.727 17 C -0.008 4.008 18 C 0.011 3.989 19 C -0.199 4.199 20 C -0.184 4.184 21 C -0.203 4.203 22 N -0.261 5.261 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.310 -8.521 -14.006 17.233 hybrid contribution 0.034 0.715 -0.335 0.790 sum 5.345 -7.806 -14.341 17.181 Atomic orbital electron populations 1.22300 0.99563 0.99414 1.01450 1.20915 0.91677 0.86220 0.99412 1.44027 1.73826 1.11433 1.01397 1.18626 1.33397 0.94587 0.93877 0.90964 1.25472 0.97201 0.96372 0.96255 1.70036 1.34790 1.06523 1.40345 0.87265 0.86476 0.78026 0.80357 1.21564 1.22031 1.18386 1.19806 0.85904 0.97030 0.86909 1.26171 0.97826 0.89713 0.92510 1.78284 0.98031 1.20564 1.15217 1.48096 1.12203 1.24822 1.35953 0.72744 1.24048 0.89577 0.91348 0.95841 1.19129 0.95540 0.92154 0.92110 1.21902 0.99339 0.98402 1.00230 1.21683 0.97231 0.99839 0.99684 1.21950 0.98986 1.00533 0.98811 1.70339 1.14315 1.23856 1.17629 0.94108 0.92727 0.93847 0.93823 0.93062 0.92736 0.91820 0.90630 0.91628 0.91310 0.92625 0.92085 0.92363 0.91098 0.92687 0.91068 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.23 37.16 0.38 -2.78 16 2 C 0.14 3.04 6.41 -4.04 -0.03 3.01 16 3 N -0.59 -14.53 2.01 -174.60 -0.35 -14.88 16 4 C -0.28 -7.92 9.77 -15.06 -0.15 -8.07 16 5 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 6 C 0.05 1.45 5.05 -17.43 -0.09 1.36 16 7 N -0.88 -27.14 13.97 55.49 0.78 -26.37 16 8 Si 0.85 21.81 26.30 -169.99 -4.47 17.34 16 9 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 10 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 11 H -0.26 -6.24 5.72 56.52 0.32 -5.92 16 12 C 0.23 5.51 4.45 -5.19 -0.02 5.49 16 13 C 0.22 5.04 7.71 -156.86 -1.21 3.83 16 14 N -0.29 -6.66 12.80 32.42 0.41 -6.24 16 15 N -0.49 -8.43 7.28 32.62 0.24 -8.19 16 16 H 0.43 5.68 8.54 -182.34 -1.56 4.13 16 17 C 0.27 4.39 6.49 -155.69 -1.01 3.38 16 18 C 0.01 0.15 0.99 -155.66 -0.15 0.00 16 19 C -0.14 -1.39 8.46 37.15 0.31 -1.07 16 20 C -0.13 -1.35 8.03 37.16 0.30 -1.05 16 21 C -0.14 -1.24 8.35 37.16 0.31 -0.93 16 22 N -0.53 -10.49 10.51 -8.16 -0.09 -10.57 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 26 H 0.04 0.89 8.11 -51.93 -0.42 0.46 16 27 H 0.05 1.09 8.00 -51.93 -0.42 0.68 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 30 H 0.08 1.91 4.64 -51.93 -0.24 1.67 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.05 0.43 7.70 -51.93 -0.40 0.03 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -33.43 319.62 -7.75 -41.18 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.73 Total: -0.25 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.36 Total: 3.16 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: 0.99 Total: -66.26 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.47 Total: 17.34 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.43 -7.75 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292594905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.003 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds