Wall clock time and date at job start Sun Mar 29 2020 23:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.30838 * 125.96327 * 265.02740 * 4 2 1 6 6 C 1.33242 * 109.82990 * 179.97438 * 5 4 2 7 7 C 1.50699 * 125.52402 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.46703 * 90.00514 * 7 6 5 9 9 C 1.46906 * 110.99903 * 293.94896 * 8 7 6 10 10 C 1.46903 * 110.99856 * 169.99961 * 8 7 6 11 11 H 1.08996 * 109.47283 * 59.99668 * 10 8 7 12 12 C 1.53000 * 109.46954 * 299.99231 * 10 8 7 13 13 C 1.50701 * 109.46999 * 179.97438 * 10 8 7 14 14 H 1.08003 * 120.00155 * 0.02562 * 13 10 8 15 15 C 1.37879 * 119.99972 * 179.97438 * 13 10 8 16 16 N 1.31512 * 120.00146 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00000 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.47583 * 60.00090 * 17 15 13 19 19 H 1.48501 * 109.47180 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46965 * 300.00186 * 17 15 13 21 21 N 1.30715 * 108.94519 * 0.02562 * 6 5 4 22 22 N 1.34431 * 125.96057 * 84.71748 * 4 2 1 23 23 H 0.97000 * 126.82321 * 0.02562 * 22 4 2 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47244 * 210.00155 * 7 6 5 32 32 H 1.08999 * 109.47491 * 330.00118 * 7 6 5 33 33 H 1.08995 * 109.46763 * 60.00146 * 9 8 7 34 34 H 1.09005 * 109.47100 * 179.97438 * 9 8 7 35 35 H 1.08994 * 109.46950 * 300.00410 * 9 8 7 36 36 H 1.08996 * 109.47482 * 300.00315 * 12 10 8 37 37 H 1.09007 * 109.46754 * 60.00904 * 12 10 8 38 38 H 1.09000 * 109.47279 * 179.97438 * 12 10 8 39 39 H 0.96995 * 120.00281 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.3750 -1.9710 -1.3038 6 6 2.7708 -2.2604 -2.5427 7 6 3.2405 -3.6108 -3.0189 8 7 2.0920 -4.3829 -3.5115 9 6 1.1637 -4.7013 -2.4183 10 6 2.5341 -5.6036 -4.1990 11 1 3.1020 -6.2250 -3.5067 12 6 3.4185 -5.2266 -5.3892 13 6 1.3312 -6.3680 -4.6887 14 1 0.3377 -5.9851 -4.5078 15 6 1.4991 -7.5556 -5.3687 16 7 2.7089 -8.0211 -5.5903 17 14 0.0081 -8.5028 -5.9763 18 1 -0.7659 -7.6560 -6.9192 19 1 0.4550 -9.7368 -6.6711 20 1 -0.8502 -8.8690 -4.8211 21 7 2.6857 -1.1830 -3.2780 22 7 2.2010 -0.1609 -2.4457 23 1 2.0252 0.7593 -2.6971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 3.9633 -3.4809 -3.8244 32 1 3.7096 -4.1446 -2.1924 33 1 0.7977 -3.7768 -1.9717 34 1 0.3225 -5.2727 -2.8108 35 1 1.6820 -5.2900 -1.6616 36 1 2.8507 -4.6051 -6.0815 37 1 4.2887 -4.6740 -5.0346 38 1 3.7470 -6.1323 -5.8990 39 1 2.8270 -8.8568 -6.0683 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292636679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:09 Heat of formation + Delta-G solvation = 83.118376 kcal Electronic energy + Delta-G solvation = -18799.363759 eV Core-core repulsion = 15971.813394 eV Total energy + Delta-G solvation = -2827.550364 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97976 -37.04552 -35.79958 -33.01856 -32.09016 -30.53032 -29.04965 -27.60859 -27.22206 -24.70398 -23.86144 -23.23785 -20.30887 -20.28671 -19.09595 -17.65636 -16.22438 -15.75178 -15.35849 -15.09187 -14.49168 -13.91111 -13.83709 -13.71761 -13.22665 -12.60429 -12.45715 -12.38576 -12.05995 -11.73899 -11.72830 -11.57944 -11.19868 -11.02729 -10.94993 -10.71024 -10.57359 -10.12874 -9.99782 -9.86451 -9.77838 -9.73236 -9.25639 -8.81668 -8.36546 -7.13967 -5.96189 -4.00198 1.80382 2.78777 3.11841 3.36385 3.40154 3.43707 3.94574 4.45828 4.46785 4.70195 4.78683 5.06080 5.13177 5.21905 5.31120 5.39207 5.40021 5.47188 5.63062 5.80075 5.93157 6.09472 6.12913 6.38916 6.50259 6.57507 6.69018 6.91672 6.92203 7.12455 7.19309 7.20327 7.56944 7.75791 7.87827 8.23938 8.36129 8.39910 8.62957 9.05383 9.64123 11.10765 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039452 B = 0.004567 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.545495 B = 6130.025206 C = 6521.886396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.152 4.152 4 C 0.279 3.721 5 N -0.534 5.534 6 C 0.254 3.746 7 C 0.137 3.863 8 N -0.530 5.530 9 C 0.041 3.959 10 C 0.213 3.787 11 H 0.002 0.998 12 C -0.135 4.135 13 C -0.502 4.502 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 N -0.302 5.302 22 N -0.488 5.488 23 H 0.434 0.566 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.014 0.986 36 H 0.036 0.964 37 H 0.009 0.991 38 H 0.086 0.914 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 16.978 10.755 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 C -0.210 4.210 4 C 0.000 4.000 5 N -0.263 5.263 6 C -0.029 4.029 7 C 0.007 3.993 8 N -0.256 5.256 9 C -0.108 4.108 10 C 0.108 3.892 11 H 0.019 0.981 12 C -0.193 4.193 13 C -0.540 4.540 14 H 0.081 0.919 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 N -0.130 5.130 22 N -0.206 5.206 23 H 0.278 0.722 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.032 0.968 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.105 0.895 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.312 16.799 9.805 19.495 hybrid contribution -0.543 -0.294 0.125 0.630 sum -1.855 16.505 9.931 19.351 Atomic orbital electron populations 1.21844 0.92795 1.03336 1.02356 1.19753 0.96568 0.94935 0.92443 1.21915 1.01792 0.94532 1.02793 1.24223 0.96771 0.90163 0.88862 1.70392 1.21580 1.12176 1.22106 1.24394 0.95869 0.96021 0.86622 1.20412 0.94469 0.85492 0.98971 1.62107 1.13552 1.24220 1.25756 1.22209 0.97439 0.98934 0.92212 1.19275 0.94907 0.83785 0.91248 0.98063 1.21876 0.96398 1.01277 0.99706 1.21096 0.92573 1.04801 1.35571 0.91915 1.24913 0.95899 0.97343 0.96014 1.69879 1.20535 1.21044 1.41834 0.86575 0.82872 0.79066 0.78962 1.20270 1.21369 1.20353 1.78101 1.22231 0.96808 1.15892 1.47983 1.52089 1.12756 1.07743 0.72179 0.92548 0.91171 0.91401 0.87468 0.92598 0.90778 0.91905 0.88501 0.93108 0.93635 0.90706 0.96754 0.94525 0.97217 0.89520 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 2 C -0.02 -0.14 3.39 -91.78 -0.31 -0.45 16 3 C -0.15 -0.91 8.95 37.15 0.33 -0.58 16 4 C 0.28 3.74 6.94 -155.69 -1.08 2.66 16 5 N -0.53 -9.28 10.45 -8.16 -0.09 -9.36 16 6 C 0.25 4.86 6.76 -156.85 -1.06 3.80 16 7 C 0.14 2.81 5.40 -4.98 -0.03 2.79 16 8 N -0.53 -12.32 4.61 -237.73 -1.10 -13.42 16 9 C 0.04 0.89 9.09 60.07 0.55 1.43 16 10 C 0.21 5.57 2.06 -68.86 -0.14 5.42 16 11 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 12 C -0.13 -3.38 8.76 37.16 0.33 -3.05 16 13 C -0.50 -14.06 7.88 -34.44 -0.27 -14.33 16 14 H 0.06 1.76 6.40 -52.48 -0.34 1.42 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 17 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 N -0.30 -5.49 12.80 32.42 0.41 -5.08 16 22 N -0.49 -6.55 7.21 32.62 0.24 -6.31 16 23 H 0.43 4.12 8.21 -182.33 -1.50 2.63 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.28 7.46 -51.93 -0.39 -0.10 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 1.96 5.83 -51.93 -0.30 1.66 16 32 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 33 H 0.04 0.94 6.72 -51.93 -0.35 0.59 16 34 H 0.07 1.70 6.10 -51.93 -0.32 1.39 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 38 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -32.05 313.67 -8.83 -40.88 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.19 Total: -1.43 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.44 Total: -1.53 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.09 Total: -59.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.05 -8.83 -40.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292636679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.996 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds