Wall clock time and date at job start Sun Mar 29 2020 23:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.30838 * 125.96327 * 265.02740 * 4 2 1 6 6 C 1.33242 * 109.82990 * 179.97438 * 5 4 2 7 7 C 1.50697 * 125.52398 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.46794 * 90.00675 * 7 6 5 9 9 C 1.46893 * 111.00256 * 66.04272 * 8 7 6 10 10 C 1.46896 * 111.00006 * 190.00097 * 8 7 6 11 11 H 1.09002 * 109.46975 * 299.99427 * 10 8 7 12 12 C 1.53004 * 109.47286 * 59.99264 * 10 8 7 13 13 C 1.50697 * 109.47310 * 179.97438 * 10 8 7 14 14 H 1.08002 * 120.00022 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99983 * 180.02562 * 13 10 8 16 16 N 1.31512 * 120.00257 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99741 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47258 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47060 * 119.99692 * 17 15 13 20 20 H 1.48501 * 109.46849 * 239.99780 * 17 15 13 21 21 N 1.30715 * 108.94519 * 0.02562 * 6 5 4 22 22 N 1.34431 * 125.96057 * 84.71748 * 4 2 1 23 23 H 0.97000 * 126.82321 * 0.02562 * 22 4 2 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09000 * 109.47453 * 209.99681 * 7 6 5 32 32 H 1.08995 * 109.47755 * 330.00494 * 7 6 5 33 33 H 1.09000 * 109.47162 * 59.99953 * 9 8 7 34 34 H 1.09004 * 109.47399 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47104 * 300.00081 * 9 8 7 36 36 H 1.08995 * 109.47015 * 299.99797 * 12 10 8 37 37 H 1.08994 * 109.47093 * 60.00515 * 12 10 8 38 38 H 1.09006 * 109.46932 * 180.02562 * 12 10 8 39 39 H 0.96999 * 120.00144 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.3750 -1.9710 -1.3038 6 6 2.7708 -2.2604 -2.5427 7 6 3.2415 -3.6105 -3.0186 8 7 2.0935 -4.3838 -3.5109 9 6 1.5219 -3.7681 -4.7159 10 6 2.4688 -5.7817 -3.7613 11 1 3.2605 -5.8169 -4.5097 12 6 2.9670 -6.4168 -2.4615 13 6 1.2683 -6.5419 -4.2634 14 1 0.3212 -6.0371 -4.3840 15 6 1.3789 -7.8821 -4.5678 16 7 2.5321 -8.4970 -4.4205 17 14 -0.1093 -8.8246 -5.1894 18 1 -1.2774 -7.9109 -5.2656 19 1 0.1800 -9.3724 -6.5390 20 1 -0.4138 -9.9398 -4.2573 21 7 2.6857 -1.1830 -3.2780 22 7 2.2010 -0.1609 -2.4457 23 1 2.0252 0.7593 -2.6971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.9640 -3.4803 -3.8243 32 1 3.7112 -4.1438 -2.1921 33 1 2.2794 -3.7303 -5.4988 34 1 0.6735 -4.3603 -5.0590 35 1 1.1884 -2.7566 -4.4839 36 1 3.8352 -5.8671 -2.0981 37 1 2.1753 -6.3816 -1.7132 38 1 3.2459 -7.4540 -2.6475 39 1 2.6098 -9.4399 -4.6343 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292636682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:12 Heat of formation + Delta-G solvation = 83.477014 kcal Electronic energy + Delta-G solvation = -18792.971117 eV Core-core repulsion = 15965.436304 eV Total energy + Delta-G solvation = -2827.534813 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.97597 -37.06883 -35.77373 -32.99121 -32.15519 -30.51865 -28.95895 -27.62912 -27.30551 -24.72083 -23.68603 -23.35698 -20.30984 -20.27505 -19.13325 -17.63206 -16.24369 -15.66671 -15.50940 -14.91927 -14.56624 -13.92094 -13.86117 -13.72229 -13.20942 -12.59166 -12.49683 -12.24473 -12.14971 -11.83811 -11.63353 -11.53941 -11.18501 -11.04019 -10.98120 -10.67686 -10.60238 -10.12127 -9.99351 -9.90931 -9.73266 -9.70074 -9.26127 -8.80896 -8.37288 -7.14794 -5.96651 -4.00487 1.78168 2.77387 3.14224 3.33440 3.41060 3.46084 3.96909 4.45770 4.49016 4.72833 4.78883 5.05167 5.17423 5.25402 5.28076 5.38520 5.41255 5.50201 5.65080 5.82265 5.97680 6.07564 6.14500 6.32399 6.48921 6.50639 6.68216 6.87910 6.93932 7.14030 7.18271 7.20512 7.57062 7.75821 7.87952 8.24202 8.36343 8.40327 8.62426 9.05552 9.63962 11.10350 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036389 B = 0.004547 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.287459 B = 6156.925197 C = 6302.932964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.152 4.152 4 C 0.280 3.720 5 N -0.521 5.521 6 C 0.258 3.742 7 C 0.137 3.863 8 N -0.528 5.528 9 C 0.038 3.962 10 C 0.213 3.787 11 H 0.001 0.999 12 C -0.134 4.134 13 C -0.500 4.500 14 H 0.064 0.936 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.284 1.284 21 N -0.319 5.319 22 N -0.488 5.488 23 H 0.433 0.567 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.013 0.987 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.010 0.990 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 18.223 7.657 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 C -0.210 4.210 4 C 0.001 3.999 5 N -0.249 5.249 6 C -0.025 4.025 7 C 0.006 3.994 8 N -0.254 5.254 9 C -0.111 4.111 10 C 0.108 3.892 11 H 0.019 0.981 12 C -0.192 4.192 13 C -0.539 4.539 14 H 0.082 0.918 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.210 1.210 21 N -0.148 5.148 22 N -0.206 5.206 23 H 0.278 0.722 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.031 0.969 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.966 17.734 7.488 19.274 hybrid contribution -0.343 0.185 -1.081 1.149 sum -1.309 17.919 6.407 19.075 Atomic orbital electron populations 1.21845 0.92764 1.03464 1.02271 1.19759 0.96608 0.94869 0.92482 1.21916 1.01769 0.94566 1.02757 1.24285 0.96702 0.90145 0.88801 1.70388 1.20773 1.11774 1.22010 1.24395 0.95497 0.95619 0.86998 1.20438 0.93188 0.85573 1.00165 1.62075 1.27838 1.03944 1.31537 1.22235 0.99907 0.97934 0.90985 1.19290 0.95539 0.80999 0.93405 0.98135 1.21866 0.97062 1.02800 0.97467 1.21172 0.96055 0.94122 1.42558 0.91809 1.24917 0.95987 0.97541 0.95767 1.69902 1.23683 1.10585 1.49077 0.86462 0.82950 0.79846 0.78276 1.19799 1.21184 1.21023 1.78048 1.23298 0.96959 1.16498 1.47935 1.52213 1.12636 1.07819 0.72245 0.92641 0.91170 0.91248 0.87355 0.90763 0.91922 0.92667 0.93617 0.87976 0.96876 0.90448 0.93940 0.97147 0.94396 0.89568 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.18 37.16 0.34 -0.86 16 2 C -0.02 -0.14 3.39 -91.78 -0.31 -0.46 16 3 C -0.15 -0.93 8.95 37.15 0.33 -0.60 16 4 C 0.28 3.84 6.94 -155.69 -1.08 2.76 16 5 N -0.52 -9.44 11.19 -8.16 -0.09 -9.53 16 6 C 0.26 4.95 6.77 -156.85 -1.06 3.89 16 7 C 0.14 2.81 5.41 -4.97 -0.03 2.79 16 8 N -0.53 -12.27 4.61 -237.73 -1.10 -13.37 16 9 C 0.04 0.83 9.08 60.06 0.55 1.38 16 10 C 0.21 5.55 2.06 -68.87 -0.14 5.41 16 11 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 12 C -0.13 -3.35 8.76 37.16 0.33 -3.03 16 13 C -0.50 -14.00 7.88 -34.44 -0.27 -14.27 16 14 H 0.06 1.80 6.41 -52.49 -0.34 1.46 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -25.68 11.32 55.43 0.63 -25.06 16 17 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 N -0.32 -5.62 12.05 32.42 0.39 -5.23 16 22 N -0.49 -6.48 7.21 32.62 0.24 -6.25 16 23 H 0.43 4.03 8.21 -182.33 -1.50 2.53 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.28 7.46 -51.93 -0.39 -0.10 16 31 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 32 H 0.10 2.08 5.83 -51.93 -0.30 1.78 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 1.77 6.10 -51.93 -0.32 1.45 16 35 H 0.04 0.88 6.72 -51.93 -0.35 0.53 16 36 H 0.01 0.22 6.20 -51.93 -0.32 -0.10 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -32.09 313.68 -8.86 -40.95 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.19 Total: -1.43 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.44 Total: -1.44 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.07 Total: -59.42 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.09 -8.86 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292636682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.429 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds