Wall clock time and date at job start Sun Mar 29 2020 23:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47571 * 2 1 4 4 N 1.46499 * 109.47414 * 185.19055 * 3 2 1 5 5 C 1.36936 * 120.00401 * 96.05470 * 4 3 2 6 6 H 1.08001 * 120.00218 * 170.51851 * 5 4 3 7 7 C 1.38813 * 119.99706 * 350.52084 * 5 4 3 8 8 N 1.31619 * 120.00189 * 333.29352 * 7 5 4 9 9 Si 1.86809 * 119.99917 * 153.29468 * 7 5 4 10 10 H 1.48494 * 109.47085 * 94.99408 * 9 7 5 11 11 H 1.48498 * 109.46877 * 214.99773 * 9 7 5 12 12 H 1.48498 * 109.47030 * 334.99449 * 9 7 5 13 13 C 1.46500 * 120.00049 * 276.06294 * 4 3 2 14 14 C 1.50709 * 109.46926 * 274.44298 * 13 4 3 15 15 N 1.31376 * 127.04704 * 275.59755 * 14 13 4 16 16 N 1.28605 * 108.71411 * 179.97438 * 15 14 13 17 17 C 1.46504 * 124.61685 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.46857 * 269.98473 * 17 16 15 19 19 N 1.28596 * 110.76604 * 359.97438 * 16 15 14 20 20 C 1.31383 * 108.71610 * 0.02562 * 19 16 15 21 21 C 1.50699 * 127.04901 * 180.02562 * 20 19 16 22 22 H 1.08998 * 109.47674 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47011 * 300.00374 * 1 2 3 24 24 H 1.09001 * 109.47025 * 59.99929 * 1 2 3 25 25 H 1.09003 * 109.47011 * 239.99626 * 2 1 3 26 26 H 1.09001 * 109.47025 * 120.00071 * 2 1 3 27 27 H 1.08997 * 109.47181 * 65.18882 * 3 2 1 28 28 H 1.09001 * 109.46923 * 305.18493 * 3 2 1 29 29 H 0.96998 * 119.99701 * 180.02562 * 8 7 5 30 30 H 1.08991 * 109.47599 * 154.44272 * 13 4 3 31 31 H 1.09002 * 109.47210 * 34.43593 * 13 4 3 32 32 H 1.09004 * 109.46881 * 29.97856 * 17 16 15 33 33 H 1.08997 * 109.47037 * 149.98221 * 17 16 15 34 34 H 1.08997 * 109.47503 * 60.00033 * 18 17 16 35 35 H 1.09003 * 109.46478 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.46871 * 299.99389 * 18 17 16 37 37 H 1.09007 * 109.46924 * 85.05816 * 21 20 19 38 38 H 1.08997 * 109.47273 * 205.05733 * 21 20 19 39 39 H 1.09000 * 109.47408 * 325.05928 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4997 1.4443 -0.1250 5 6 4.0815 1.6057 -1.3540 6 1 5.1476 1.7606 -1.4306 7 6 3.3011 1.5704 -2.5014 8 7 2.1721 0.8938 -2.5088 9 14 3.8531 2.4831 -4.0350 10 1 4.5835 1.5503 -4.9302 11 1 2.6652 3.0222 -4.7446 12 1 4.7493 3.6025 -3.6491 13 6 4.3370 1.2732 1.0650 14 6 4.5483 2.6105 1.7269 15 7 5.4570 3.5094 1.4229 16 7 5.3201 4.5171 2.2102 17 6 6.1551 5.7203 2.1747 18 6 7.3601 5.5323 3.0986 19 7 4.3499 4.3251 3.0321 20 6 3.8178 3.1487 2.7888 21 6 2.6566 2.5113 3.5074 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7546 1.9287 0.9328 28 1 1.6029 1.9824 -0.8399 29 1 1.6270 0.8689 -3.3107 30 1 5.3007 0.8554 0.7742 31 1 3.8432 0.5966 1.7625 32 1 6.5019 5.8919 1.1556 33 1 5.5712 6.5778 2.5091 34 1 7.9441 4.6748 2.7642 35 1 7.9811 6.4278 3.0724 36 1 7.0133 5.3607 4.1176 37 1 1.7219 2.8595 3.0678 38 1 2.7213 1.4274 3.4124 39 1 2.6868 2.7860 4.5618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294804084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:05 Heat of formation + Delta-G solvation = 122.425626 kcal Electronic energy + Delta-G solvation = -19329.293180 eV Core-core repulsion = 16503.447306 eV Total energy + Delta-G solvation = -2825.845874 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.88850 -36.36185 -34.72842 -32.42386 -31.92972 -31.71608 -30.22294 -27.64364 -26.33342 -25.39913 -23.16886 -21.92348 -20.61376 -20.38177 -19.41310 -16.98107 -16.44084 -16.00347 -14.95151 -14.53759 -13.78171 -13.70184 -13.39880 -13.37658 -13.11645 -12.92974 -12.66580 -12.33041 -12.18201 -12.04091 -11.43903 -11.42117 -11.16511 -10.88349 -10.69186 -10.55836 -10.30017 -10.11570 -10.03150 -9.88703 -9.75478 -9.39887 -9.12780 -8.37516 -8.26790 -6.85102 -5.71711 -2.99630 2.40234 2.77602 3.08474 3.43351 3.51519 3.56959 4.51143 4.60037 4.88191 5.01580 5.13145 5.33928 5.39337 5.45913 5.63370 5.66705 5.83129 5.86738 5.93749 5.94985 6.20668 6.27810 6.28166 6.45040 6.60408 6.64785 6.78151 6.88737 6.92090 6.98806 7.22772 7.30649 7.34674 7.75459 7.85040 8.16802 8.40521 9.01418 9.30770 9.92197 10.37016 11.32402 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.007831 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.880239 B = 3574.835600 C = 4766.804385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.173 3.827 4 N -0.583 5.583 5 C -0.245 4.245 6 H 0.073 0.927 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.887 3.113 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.229 3.771 14 C 0.012 3.988 15 N -0.281 5.281 16 N -0.172 5.172 17 C 0.142 3.858 18 C -0.167 4.167 19 N -0.307 5.307 20 C -0.004 4.004 21 C -0.056 4.056 22 H 0.032 0.968 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.099 0.901 26 H 0.017 0.983 27 H 0.006 0.994 28 H 0.080 0.920 29 H 0.250 0.750 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 4.840 10.828 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.048 3.952 4 N -0.303 5.303 5 C -0.374 4.374 6 H 0.091 0.909 7 C -0.196 4.196 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.209 1.209 13 C 0.098 3.902 14 C -0.155 4.155 15 N -0.122 5.122 16 N -0.072 5.072 17 C 0.022 3.978 18 C -0.226 4.226 19 N -0.149 5.149 20 C -0.167 4.167 21 C -0.115 4.115 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.117 0.883 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.942 5.987 10.624 12.816 hybrid contribution -0.285 0.007 -0.924 0.967 sum 3.658 5.994 9.700 11.975 Atomic orbital electron populations 1.21596 0.98459 0.99186 1.00048 1.22047 0.93015 1.00321 1.01047 1.20784 0.82274 0.94650 0.97450 1.44103 1.01316 1.83153 1.01725 1.19249 0.93167 1.42174 0.82828 0.90879 1.24644 0.97620 1.00277 0.97082 1.70195 1.15730 1.39931 1.27697 0.86501 0.77471 0.80714 0.83638 1.21785 1.21766 1.20869 1.19022 0.96079 0.86356 0.88758 1.24863 0.93445 1.00836 0.96349 1.74082 1.24686 0.96695 1.16729 1.47916 1.22880 1.14940 1.21444 1.21733 0.90849 0.82385 1.02872 1.22153 0.97167 1.03314 0.99921 1.73774 1.03833 1.19402 1.17909 1.22986 1.01509 0.92274 0.99929 1.19976 0.93145 0.99945 0.98450 0.94902 0.95155 0.92917 0.88291 0.96460 0.97601 0.90145 0.93958 0.91709 0.92211 0.87914 0.88286 0.91502 0.90237 0.91788 0.90894 0.90393 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.91 37.15 0.37 -2.19 16 2 C -0.12 -2.73 5.66 -26.74 -0.15 -2.89 16 3 C 0.17 4.09 4.90 -4.04 -0.02 4.07 16 4 N -0.58 -14.35 2.52 -174.61 -0.44 -14.79 16 5 C -0.25 -6.71 9.65 -15.06 -0.15 -6.85 16 6 H 0.07 2.03 7.96 -52.49 -0.42 1.61 16 7 C 0.00 0.02 4.83 -17.43 -0.08 -0.06 16 8 N -0.89 -24.52 8.74 55.49 0.48 -24.04 16 9 Si 0.89 22.00 29.63 -169.99 -5.04 16.97 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 13 C 0.23 4.81 6.17 -5.19 -0.03 4.78 16 14 C 0.01 0.25 6.93 -82.25 -0.57 -0.32 16 15 N -0.28 -5.88 12.05 33.72 0.41 -5.47 16 16 N -0.17 -3.11 3.95 -10.61 -0.04 -3.15 16 17 C 0.14 1.79 7.26 -4.04 -0.03 1.76 16 18 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 19 N -0.31 -5.71 12.05 33.71 0.41 -5.31 16 20 C 0.00 -0.07 7.35 -82.25 -0.60 -0.67 16 21 C -0.06 -0.83 9.91 36.01 0.36 -0.47 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.10 2.52 6.37 -51.93 -0.33 2.19 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.01 0.13 7.43 -51.93 -0.39 -0.26 16 28 H 0.08 2.16 5.99 -51.93 -0.31 1.85 16 29 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.06 1.37 8.00 -51.93 -0.42 0.96 16 31 H 0.06 1.12 7.22 -51.93 -0.38 0.75 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.07 7.92 -51.92 -0.41 0.66 16 38 H 0.08 1.06 7.26 -51.93 -0.38 0.68 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -30.98 320.97 -6.30 -37.28 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.39 Total: -2.16 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.53 Total: -4.16 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.82 Total: -52.76 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.04 Total: 16.97 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.98 -6.30 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294804084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.704 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds