Wall clock time and date at job start Sun Mar 29 2020 23:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46917 * 2 1 4 4 H 1.09001 * 109.47240 * 179.82299 * 3 2 1 5 5 C 1.50697 * 109.47192 * 299.82921 * 3 2 1 6 6 H 1.08000 * 120.00174 * 119.99810 * 5 3 2 7 7 C 1.37878 * 119.99800 * 299.99592 * 5 3 2 8 8 N 1.31505 * 120.00074 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99991 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46956 * 89.99970 * 9 7 5 11 11 H 1.48497 * 109.47124 * 210.00351 * 9 7 5 12 12 H 1.48499 * 109.47204 * 330.00577 * 9 7 5 13 13 N 1.46909 * 109.46956 * 59.82696 * 3 2 1 14 14 C 1.46899 * 110.99562 * 85.92806 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54549 * 14 13 3 16 16 N 1.31385 * 127.04852 * 90.02673 * 15 14 13 17 17 N 1.28601 * 108.71708 * 179.97438 * 16 15 14 18 18 C 1.46494 * 124.61486 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47503 * 90.00240 * 18 17 16 20 20 N 1.28601 * 110.76301 * 359.97438 * 17 16 15 21 21 C 1.31377 * 108.71911 * 359.71931 * 20 17 16 22 22 C 1.50703 * 127.05300 * 180.26461 * 21 20 17 23 23 H 1.09001 * 109.46678 * 175.59250 * 1 2 3 24 24 H 1.08994 * 109.47180 * 55.59380 * 1 2 3 25 25 H 1.08996 * 109.47457 * 295.58631 * 1 2 3 26 26 H 1.08996 * 109.47469 * 120.00047 * 2 1 3 27 27 H 1.08999 * 109.47419 * 240.00308 * 2 1 3 28 28 H 0.97002 * 120.00388 * 179.97438 * 8 7 5 29 29 H 1.00896 * 110.99633 * 209.88529 * 13 3 2 30 30 H 1.08995 * 109.47219 * 295.54380 * 14 13 3 31 31 H 1.08999 * 109.47280 * 55.55056 * 14 13 3 32 32 H 1.09003 * 109.46703 * 209.99980 * 18 17 16 33 33 H 1.08995 * 109.47691 * 329.99447 * 18 17 16 34 34 H 1.08999 * 109.47097 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.46508 * 299.99425 * 19 18 17 36 36 H 1.09004 * 109.47120 * 59.99175 * 19 18 17 37 37 H 1.08998 * 109.47110 * 270.19759 * 22 21 20 38 38 H 1.09002 * 109.46664 * 30.19086 * 22 21 20 39 39 H 1.08998 * 109.46846 * 150.19233 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4426 0.0032 5 6 1.5411 2.1517 -1.2325 6 1 0.9199 3.0299 -1.1361 7 6 1.8778 1.6795 -2.4834 8 7 2.6339 0.6099 -2.6008 9 14 1.2589 2.5581 -4.0112 10 1 2.2376 3.5998 -4.4139 11 1 1.0973 1.5776 -5.1148 12 1 -0.0503 3.1954 -3.7196 13 7 1.5468 2.1363 1.1974 14 6 2.4392 1.9095 2.3421 15 6 1.9630 2.7218 3.5187 16 7 1.1121 2.3470 4.4470 17 7 0.9585 3.3140 5.2808 18 6 0.0839 3.2692 6.4551 19 6 0.8706 2.7430 7.6573 20 7 1.6781 4.3251 4.9438 21 6 2.3415 4.0248 3.8503 22 6 3.3090 4.9069 3.1040 23 1 -0.3633 -1.0247 -0.0790 24 1 -0.3633 0.5807 -0.8478 25 1 -0.3634 0.4438 0.9268 26 1 1.8934 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.8705 0.2774 -3.4808 29 1 1.4285 3.1226 1.0209 30 1 2.4322 0.8516 2.6042 31 1 3.4526 2.2118 2.0782 32 1 -0.2841 4.2720 6.6724 33 1 -0.7594 2.6082 6.2552 34 1 0.2199 2.7101 8.5311 35 1 1.2384 1.7402 7.4399 36 1 1.7139 3.4040 7.8572 37 1 2.7687 5.4883 2.3569 38 1 3.7996 5.5825 3.8049 39 1 4.0585 4.2881 2.6107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294981446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:54 Heat of formation + Delta-G solvation = 94.443324 kcal Electronic energy + Delta-G solvation = -18773.820151 eV Core-core repulsion = 15946.760874 eV Total energy + Delta-G solvation = -2827.059278 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.27142 -36.49251 -35.04761 -32.98315 -32.45940 -31.30624 -30.13841 -27.88594 -26.83710 -24.83586 -23.12740 -22.88480 -20.85105 -20.58899 -18.96867 -17.12505 -16.49278 -16.19037 -14.92996 -14.70599 -14.28190 -13.79957 -13.64344 -13.47923 -13.21046 -12.87930 -12.75509 -12.49095 -12.27280 -12.11361 -11.75504 -11.58055 -11.54196 -10.93034 -10.86159 -10.59087 -10.46966 -10.35590 -10.05125 -9.79268 -9.67899 -9.33067 -8.80825 -8.65540 -8.43468 -7.19916 -5.99431 -4.04667 2.06157 2.46109 2.68648 3.31009 3.38289 3.42076 4.21746 4.42981 4.67363 4.75333 4.93084 5.01858 5.22062 5.31669 5.40501 5.45716 5.56054 5.69824 5.76567 5.77479 6.00878 6.12096 6.26459 6.53273 6.56933 6.62658 6.75492 6.91853 6.97655 7.30638 7.34588 7.53707 7.79231 7.82358 7.87779 8.30197 8.42049 8.63807 8.69417 9.04295 9.59965 11.06436 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.004884 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.674182 B = 5732.085900 C = 6131.796033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.003 0.997 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.146 3.854 15 C 0.023 3.977 16 N -0.275 5.275 17 N -0.166 5.166 18 C 0.141 3.859 19 C -0.169 4.169 20 N -0.299 5.299 21 C 0.002 3.998 22 C -0.063 4.063 23 H 0.012 0.988 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.010 0.990 27 H 0.087 0.913 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.165 5.058 15.393 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.021 0.979 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.309 5.309 14 C 0.015 3.985 15 C -0.141 4.141 16 N -0.117 5.117 17 N -0.066 5.066 18 C 0.021 3.979 19 C -0.228 4.228 20 N -0.141 5.141 21 C -0.161 4.161 22 C -0.122 4.122 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.029 0.971 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.373 4.376 16.560 17.292 hybrid contribution 0.861 0.960 -1.739 2.165 sum -1.512 5.336 14.822 15.825 Atomic orbital electron populations 1.21443 0.97563 0.97347 1.01334 1.21435 0.95043 0.98199 0.99467 1.19172 0.93047 0.91502 0.85330 0.97930 1.21168 1.31602 1.11944 0.90271 0.92329 1.24864 0.95061 0.94976 0.98848 1.69879 1.36716 1.22645 1.23473 0.86589 0.79251 0.79337 0.82783 1.20805 1.21278 1.19909 1.60733 1.48498 1.16014 1.05657 1.20147 0.93925 0.97857 0.86570 1.23236 0.97871 0.94781 0.98162 1.74041 1.18359 1.16966 1.02305 1.47905 1.32177 1.05958 1.20560 1.21829 0.91218 1.04510 0.80369 1.22172 1.01300 1.02491 0.96797 1.73869 1.08453 1.15673 1.16139 1.23076 1.02125 0.95929 0.95006 1.20049 0.95955 0.97652 0.98520 0.96850 0.92587 0.93928 0.97091 0.89500 0.92970 0.85169 0.90343 0.93957 0.87883 0.87633 0.89940 0.91435 0.91653 0.90341 0.91155 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.52 37.16 0.35 -2.41 16 2 C -0.10 -2.52 5.59 -26.73 -0.15 -2.66 16 3 C 0.22 5.33 2.30 -68.86 -0.16 5.17 16 4 H 0.00 0.08 7.71 -51.93 -0.40 -0.32 16 5 C -0.51 -13.56 7.26 -34.44 -0.25 -13.81 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.85 11.32 55.43 0.63 -24.23 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -14.47 5.64 -109.21 -0.62 -15.09 16 14 C 0.15 2.74 5.99 -4.97 -0.03 2.71 16 15 C 0.02 0.41 6.82 -82.25 -0.56 -0.15 16 16 N -0.28 -4.88 12.05 33.72 0.41 -4.47 16 17 N -0.17 -2.52 3.95 -10.62 -0.04 -2.56 16 18 C 0.14 1.40 7.26 -4.04 -0.03 1.37 16 19 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 20 N -0.30 -4.80 12.05 33.72 0.41 -4.39 16 21 C 0.00 0.03 7.35 -82.25 -0.60 -0.57 16 22 C -0.06 -0.81 10.34 36.01 0.37 -0.44 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.06 1.38 7.07 -51.93 -0.37 1.01 16 25 H 0.04 0.96 7.74 -51.93 -0.40 0.56 16 26 H 0.01 0.24 7.60 -51.93 -0.39 -0.15 16 27 H 0.09 2.34 6.06 -51.93 -0.31 2.02 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.33 7.02 8.13 -39.29 -0.32 6.70 16 30 H 0.08 1.52 7.61 -51.93 -0.40 1.12 16 31 H 0.04 0.75 7.30 -51.93 -0.38 0.38 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.98 7.49 -51.93 -0.39 0.59 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -30.42 321.61 -6.44 -36.86 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.28 Total: 3.19 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -0.77 Total: -10.14 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.78 Total: -50.74 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.42 -6.44 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294981446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.300 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds