Wall clock time and date at job start Sun Mar 29 2020 23:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46861 * 2 1 4 4 C 1.36939 * 119.99662 * 272.10816 * 3 2 1 5 5 H 1.07993 * 120.00415 * 319.91786 * 4 3 2 6 6 C 1.38818 * 119.99980 * 139.91705 * 4 3 2 7 7 N 1.31616 * 120.00544 * 161.28581 * 6 4 3 8 8 Si 1.86806 * 119.99688 * 341.28979 * 6 4 3 9 9 H 1.48499 * 109.47401 * 95.70279 * 8 6 4 10 10 H 1.48499 * 109.47112 * 215.70040 * 8 6 4 11 11 H 1.48504 * 109.47221 * 335.69899 * 8 6 4 12 12 C 1.46495 * 120.00187 * 92.11012 * 3 2 1 13 13 C 1.50703 * 109.46798 * 84.49774 * 12 3 2 14 14 N 1.30519 * 126.35013 * 82.99091 * 13 12 3 15 15 N 1.28597 * 109.67630 * 179.97438 * 14 13 12 16 16 C 1.30522 * 109.66971 * 359.97438 * 15 14 13 17 17 C 1.50703 * 126.34330 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47201 * 60.01731 * 17 16 15 19 19 C 1.53003 * 109.46707 * 300.01989 * 17 16 15 20 20 N 1.35490 * 107.30997 * 0.22549 * 16 15 14 21 21 C 1.46498 * 126.98391 * 179.77704 * 20 16 15 22 22 H 1.09007 * 109.46910 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47788 * 300.00246 * 1 2 3 24 24 H 1.09001 * 109.47190 * 60.00620 * 1 2 3 25 25 H 1.08995 * 109.47445 * 240.00167 * 2 1 3 26 26 H 1.09001 * 109.47190 * 119.99380 * 2 1 3 27 27 H 0.96988 * 120.00459 * 180.02562 * 7 6 4 28 28 H 1.08991 * 109.47335 * 324.49803 * 12 3 2 29 29 H 1.09001 * 109.47229 * 204.49559 * 12 3 2 30 30 H 1.08996 * 109.46795 * 180.02562 * 17 16 15 31 31 H 1.09000 * 109.46814 * 60.00411 * 18 17 16 32 32 H 1.08996 * 109.47399 * 299.99818 * 18 17 16 33 33 H 1.09007 * 109.47040 * 179.97438 * 18 17 16 34 34 H 1.09007 * 109.46780 * 180.02562 * 19 17 16 35 35 H 1.08998 * 109.47350 * 299.99729 * 19 17 16 36 36 H 1.08996 * 109.47551 * 60.00392 * 19 17 16 37 37 H 1.08999 * 109.47128 * 90.20607 * 21 20 16 38 38 H 1.08994 * 109.47512 * 210.21151 * 21 20 16 39 39 H 1.09006 * 109.46780 * 330.21529 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2053 2.0413 -1.1852 5 1 2.6275 1.5211 -2.0322 6 6 1.8522 3.3791 -1.2978 7 7 2.3493 4.1112 -2.2721 8 14 0.6716 4.1403 -0.0665 9 1 1.4437 4.8164 1.0069 10 1 -0.1908 5.1332 -0.7562 11 1 -0.1767 3.0766 0.5288 12 6 2.3064 2.0563 1.2678 13 6 3.7008 1.7047 1.7185 14 7 4.8078 2.2719 1.3230 15 7 5.8103 1.7223 1.9118 16 6 5.3883 0.7798 2.7101 17 6 6.2448 -0.1030 3.5808 18 6 7.0341 0.7626 4.5649 19 6 7.2174 -0.8945 2.7041 20 7 4.0380 0.7385 2.6067 21 6 3.1272 -0.1653 3.3136 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.1029 5.0459 -2.3506 28 1 1.5887 1.7344 2.0222 29 1 2.2301 3.1350 1.1307 30 1 5.6091 -0.7945 4.1338 31 1 6.3412 1.3265 5.1894 32 1 7.6698 1.4540 4.0118 33 1 7.6533 0.1240 5.1949 34 1 7.8366 -1.5334 3.3338 35 1 6.6551 -1.5113 2.0030 36 1 7.8531 -0.2032 2.1510 37 1 2.8189 0.2918 4.2539 38 1 2.2491 -0.3528 2.6957 39 1 3.6360 -1.1075 3.5174 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299615085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:15 Heat of formation + Delta-G solvation = 93.486375 kcal Electronic energy + Delta-G solvation = -19541.463530 eV Core-core repulsion = 16714.362756 eV Total energy + Delta-G solvation = -2827.100774 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.52964 -36.52120 -35.58369 -34.40014 -31.92298 -30.86559 -28.80468 -27.33703 -27.19993 -25.99766 -23.87434 -23.10767 -21.12672 -19.91009 -19.49539 -17.15634 -16.50570 -15.99991 -15.28795 -14.95710 -14.50984 -14.35047 -13.87767 -13.45780 -13.26762 -12.97586 -12.88012 -12.60150 -12.27029 -12.16027 -11.87485 -11.67151 -11.43120 -11.26904 -11.07654 -10.97759 -10.79874 -10.54561 -10.18110 -10.14920 -9.68581 -9.62760 -9.56501 -8.58164 -8.38478 -6.99096 -5.97483 -3.47071 2.33089 2.89945 3.29432 3.42160 3.45631 3.56299 4.45433 4.49552 4.68684 4.77640 4.92282 5.04362 5.11179 5.13700 5.21634 5.34242 5.38148 5.54255 5.57920 5.68743 5.77934 5.81489 5.83989 6.04167 6.13861 6.16055 6.20977 6.26478 6.36007 6.43856 6.52394 6.68559 6.80806 6.94505 7.40345 8.01096 8.38544 8.88626 9.47724 9.66507 10.00570 11.17428 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026122 B = 0.007153 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.650837 B = 3913.395898 C = 4313.510203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.145 3.855 3 N -0.586 5.586 4 C -0.270 4.270 5 H 0.079 0.921 6 C 0.047 3.953 7 N -0.890 5.890 8 Si 0.870 3.130 9 H -0.283 1.283 10 H -0.297 1.297 11 H -0.264 1.264 12 C 0.212 3.788 13 C 0.181 3.819 14 N -0.277 5.277 15 N -0.294 5.294 16 C 0.149 3.851 17 C 0.001 3.999 18 C -0.139 4.139 19 C -0.140 4.140 20 N -0.479 5.479 21 C 0.072 3.928 22 H 0.040 0.960 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.265 0.735 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -11.472 14.998 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.019 3.981 3 N -0.308 5.308 4 C -0.399 4.399 5 H 0.096 0.904 6 C -0.155 4.155 7 N -0.529 5.529 8 Si 0.699 3.301 9 H -0.210 1.210 10 H -0.224 1.224 11 H -0.189 1.189 12 C 0.082 3.918 13 C -0.089 4.089 14 N -0.116 5.116 15 N -0.135 5.135 16 C -0.118 4.118 17 C -0.020 4.020 18 C -0.197 4.197 19 C -0.198 4.198 20 N -0.172 5.172 21 C -0.072 4.072 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.420 -10.376 14.105 17.677 hybrid contribution -1.553 -0.354 1.274 2.039 sum 0.867 -10.730 15.379 18.772 Atomic orbital electron populations 1.22301 0.98909 0.99402 1.02095 1.20937 0.92205 0.86047 0.98862 1.44136 1.73274 1.11681 1.01673 1.18670 1.37553 0.94336 0.89346 0.90394 1.25463 0.97192 0.96745 0.96105 1.69825 1.42532 1.07224 1.33342 0.87014 0.82539 0.79115 0.81422 1.21038 1.22430 1.18857 1.19944 0.83931 0.99164 0.88717 1.26889 1.01430 0.89450 0.91081 1.74383 0.94551 1.22900 1.19792 1.74180 1.23676 1.07605 1.07993 1.24581 0.81970 1.01839 1.03399 1.19434 0.94681 0.94100 0.93790 1.21777 0.99984 0.99778 0.98172 1.21790 0.98813 0.99810 0.99425 1.46154 1.07208 1.29174 1.34669 1.22043 0.94288 0.93296 0.97573 0.94063 0.93918 0.91975 0.92855 0.94995 0.92505 0.92729 0.89230 0.90427 0.92848 0.91209 0.91957 0.91966 0.92741 0.91187 0.90600 0.88965 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 10.23 37.16 0.38 -2.47 16 2 C 0.14 2.74 6.41 -4.04 -0.03 2.72 16 3 N -0.59 -13.71 2.03 -174.62 -0.36 -14.07 16 4 C -0.27 -7.61 9.93 -15.06 -0.15 -7.76 16 5 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 6 C 0.05 1.36 5.32 -17.43 -0.09 1.27 16 7 N -0.89 -27.65 13.97 55.49 0.78 -26.88 16 8 Si 0.87 21.74 24.90 -169.99 -4.23 17.51 16 9 H -0.28 -7.02 6.74 56.52 0.38 -6.64 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.26 -6.16 7.11 56.52 0.40 -5.75 16 12 C 0.21 4.64 4.52 -5.19 -0.02 4.62 16 13 C 0.18 3.92 7.61 -154.98 -1.18 2.74 16 14 N -0.28 -6.93 12.21 32.80 0.40 -6.53 16 15 N -0.29 -6.46 12.21 32.80 0.40 -6.06 16 16 C 0.15 2.58 6.54 -154.99 -1.01 1.56 16 17 C 0.00 0.01 3.27 -91.77 -0.30 -0.29 16 18 C -0.14 -1.50 9.17 37.15 0.34 -1.16 16 19 C -0.14 -1.59 9.18 37.16 0.34 -1.25 16 20 N -0.48 -8.14 3.15 -118.00 -0.37 -8.51 16 21 C 0.07 0.80 10.52 59.85 0.63 1.43 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 26 H 0.03 0.52 5.97 -51.93 -0.31 0.21 16 27 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 28 H 0.05 1.00 7.52 -51.93 -0.39 0.61 16 29 H 0.09 2.21 3.64 -51.93 -0.19 2.02 16 30 H 0.08 0.73 6.89 -51.93 -0.36 0.38 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.02 5.58 -51.93 -0.29 0.73 16 39 H 0.08 0.71 7.17 -51.93 -0.37 0.34 16 LS Contribution 314.75 15.07 4.74 4.74 Total: -1.00 -34.71 314.75 -5.87 -40.57 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -6.13 Total: -2.21 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.09 Total: 1.43 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.85 Total: -62.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.23 Total: 17.51 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.71 -5.87 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299615085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.059 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds