Wall clock time and date at job start Sun Mar 29 2020 23:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99813 * 2 1 4 4 C 1.52999 * 109.46916 * 79.48367 * 3 2 1 5 5 H 1.08998 * 109.47779 * 52.47383 * 4 3 2 6 6 C 1.47208 * 109.47064 * 292.46767 * 4 3 2 7 7 N 3.70224 * 56.76631 * 43.13631 * 2 1 3 8 8 C 1.53007 * 109.47207 * 172.47091 * 4 3 2 9 9 C 1.50694 * 109.47454 * 184.99498 * 8 4 3 10 10 H 1.08002 * 120.00042 * 0.02562 * 9 8 4 11 11 C 1.37874 * 120.00216 * 179.97438 * 9 8 4 12 12 N 1.31514 * 119.99795 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00106 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47070 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46883 * 120.00104 * 13 11 9 16 16 H 1.48496 * 109.47350 * 240.00416 * 13 11 9 17 17 C 1.46898 * 110.99730 * 236.04847 * 2 1 3 18 18 C 1.53005 * 109.47141 * 286.41855 * 17 2 1 19 19 H 1.09000 * 109.47207 * 304.72320 * 18 17 2 20 20 O 1.42902 * 109.46915 * 64.72103 * 18 17 2 21 21 C 1.52998 * 109.47157 * 184.71997 * 18 17 2 22 22 C 1.53004 * 117.49918 * 248.74953 * 21 18 17 23 23 C 1.53004 * 117.49749 * 180.08897 * 21 18 17 24 24 H 1.08998 * 109.47514 * 60.78726 * 1 2 3 25 25 H 1.09005 * 109.47408 * 180.79270 * 1 2 3 26 26 H 1.09004 * 109.47284 * 300.78485 * 1 2 3 27 27 H 1.08993 * 109.47351 * 319.48073 * 3 2 1 28 28 H 1.09000 * 109.46973 * 199.47599 * 3 2 1 29 29 H 1.08996 * 109.47154 * 305.00263 * 8 4 3 30 30 H 1.09009 * 109.46612 * 64.99739 * 8 4 3 31 31 H 0.97002 * 120.00046 * 179.97438 * 12 11 9 32 32 H 1.08991 * 109.47499 * 46.42111 * 17 2 1 33 33 H 1.08995 * 109.47309 * 166.42143 * 17 2 1 34 34 H 0.96705 * 114.00136 * 59.99952 * 20 18 17 35 35 H 1.09002 * 115.55149 * 34.42044 * 21 18 17 36 36 H 1.08998 * 117.49845 * 0.02562 * 22 21 18 37 37 H 1.08996 * 117.49532 * 145.02323 * 22 21 18 38 38 H 1.08996 * 117.49548 * 214.98066 * 23 21 18 39 39 H 1.09003 * 117.50052 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9323 1.9418 1.4183 5 1 2.4184 1.2529 2.1090 6 6 0.5255 2.1213 1.8129 7 7 -0.5600 2.2598 2.1173 8 6 2.6492 3.2930 1.4569 9 6 2.6944 3.7974 2.8763 10 1 2.2561 3.2125 3.6714 11 6 3.2962 5.0049 3.1600 12 7 3.8304 5.7169 2.1918 13 14 3.3516 5.6304 4.9193 14 1 2.6852 4.6505 5.8142 15 1 4.7656 5.8017 5.3394 16 1 2.6487 6.9357 5.0030 17 6 1.9954 -0.7659 -1.1376 18 6 1.7975 -2.2613 -0.8810 19 1 2.2576 -2.5308 0.0696 20 8 0.3999 -2.5556 -0.8341 21 6 2.4499 -3.0630 -2.0090 22 6 1.5249 -3.8200 -2.9642 23 6 2.3585 -4.5886 -1.9357 24 1 -0.3634 0.5015 -0.8969 25 1 -0.3634 -1.0276 0.0142 26 1 -0.3634 0.5260 0.8829 27 1 1.3963 1.9906 -0.6676 28 1 3.0301 1.3634 -0.3426 29 1 3.6653 3.1762 1.0803 30 1 2.1109 4.0078 0.8343 31 1 4.2535 6.5667 2.3913 32 1 1.4643 -0.4797 -2.0453 33 1 3.0581 -0.5554 -1.2568 34 1 -0.0750 -2.3405 -1.6486 35 1 3.3606 -2.6329 -2.4257 36 1 0.4516 -3.7465 -2.7892 37 1 1.8274 -3.8882 -4.0091 38 1 3.2090 -5.1619 -2.3045 39 1 1.8339 -5.0210 -1.0836 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304792597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:05 Heat of formation + Delta-G solvation = 2.661484 kcal Electronic energy + Delta-G solvation = -18411.796486 eV Core-core repulsion = 15548.464498 eV Total energy + Delta-G solvation = -2863.331988 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.45344 -37.75154 -35.73530 -34.84565 -33.64634 -31.73561 -29.59718 -27.16253 -25.52606 -23.53840 -22.67642 -21.68809 -21.15354 -20.62611 -17.05860 -16.86469 -16.42768 -16.11392 -15.64531 -15.28824 -14.62459 -14.23377 -14.10436 -13.49506 -13.10139 -12.85228 -12.66773 -12.38227 -12.12981 -11.98950 -11.77809 -11.69747 -11.32849 -11.30157 -10.97296 -10.83297 -10.72754 -10.65510 -10.54809 -10.30640 -10.22728 -9.88868 -9.39310 -9.15610 -8.44614 -8.16003 -6.08549 -4.11287 3.29588 3.37701 3.42858 3.47706 3.63559 3.70772 3.89736 4.24143 4.42506 4.58187 4.66093 4.70514 4.84219 5.08647 5.10657 5.16814 5.29641 5.38285 5.49638 5.52520 5.62995 5.63770 5.78944 5.83964 5.88874 5.90293 6.02805 6.11632 6.39547 6.42340 6.58198 7.18907 7.23018 7.44589 7.46323 7.55237 7.87248 8.25101 8.46573 8.93710 9.54206 11.02441 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038946 B = 0.003964 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.777015 B = 7061.957403 C = 7385.927125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.535 5.535 3 C 0.060 3.940 4 C 0.010 3.990 5 H 0.110 0.890 6 C 0.254 3.746 7 N -0.483 5.483 8 C 0.031 3.969 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.284 1.284 17 C 0.027 3.973 18 C 0.141 3.859 19 H 0.112 0.888 20 O -0.552 6.552 21 C -0.189 4.189 22 C -0.181 4.181 23 C -0.169 4.169 24 H 0.015 0.985 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.039 0.961 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.368 0.632 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -17.036 -11.401 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.259 5.259 3 C -0.069 4.069 4 C -0.012 4.012 5 H 0.128 0.872 6 C -0.062 4.062 7 N -0.161 5.161 8 C -0.007 4.007 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.719 3.281 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.210 1.210 17 C -0.102 4.102 18 C 0.082 3.918 19 H 0.130 0.870 20 O -0.358 6.358 21 C -0.208 4.208 22 C -0.218 4.218 23 C -0.206 4.206 24 H 0.034 0.966 25 H 0.115 0.885 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.216 0.784 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.116 -17.080 -9.939 19.875 hybrid contribution 0.218 1.139 -0.537 1.277 sum -1.898 -15.942 -10.475 19.170 Atomic orbital electron populations 1.23154 0.87146 1.04351 1.00954 1.61964 1.08413 1.13870 1.41634 1.22323 1.00788 0.87478 0.96261 1.19317 0.83959 1.02270 0.95675 0.87228 1.29138 0.94670 0.90461 0.91882 1.81018 1.13679 1.11287 1.10085 1.19178 0.95595 0.87756 0.98185 1.21194 1.37189 1.04824 0.93037 0.92416 1.24956 0.95167 0.96660 0.97234 1.69949 1.37881 1.13683 1.31619 0.86536 0.77741 0.78885 0.84938 1.19639 1.20834 1.21018 1.22805 1.01035 0.94177 0.92163 1.21501 0.80860 0.91597 0.97821 0.86989 1.86617 1.20384 1.87461 1.41339 1.23145 1.02094 0.94621 1.00956 1.22950 0.98178 1.04820 0.95831 1.22906 1.02456 0.93527 1.01762 0.96646 0.88548 0.90642 0.94158 0.89249 0.94298 0.95822 0.92886 0.94620 0.89711 0.78371 0.87152 0.88387 0.88996 0.89015 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 8.80 60.06 0.53 0.41 16 2 N -0.54 -7.38 4.61 -242.93 -1.12 -8.50 16 3 C 0.06 0.92 4.68 -3.83 -0.02 0.90 16 4 C 0.01 0.19 2.40 -93.40 -0.22 -0.04 16 5 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 6 C 0.25 5.34 11.23 -20.76 -0.23 5.11 16 7 N -0.48 -10.84 17.57 42.15 0.74 -10.10 16 8 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 9 C -0.52 -14.11 8.60 -34.44 -0.30 -14.40 16 10 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 13 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C 0.03 0.28 4.78 -3.82 -0.02 0.26 16 18 C 0.14 1.37 3.55 -26.73 -0.09 1.27 16 19 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 20 O -0.55 -5.60 9.39 -35.23 -0.33 -5.93 16 21 C -0.19 -1.49 5.71 -90.62 -0.52 -2.01 16 22 C -0.18 -1.28 9.74 -26.69 -0.26 -1.54 16 23 C -0.17 -1.30 10.19 -26.69 -0.27 -1.57 16 24 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 25 H 0.10 1.30 5.12 -51.93 -0.27 1.03 16 26 H 0.08 1.30 4.29 -51.93 -0.22 1.07 16 27 H 0.04 0.63 7.88 -51.93 -0.41 0.22 16 28 H 0.09 1.22 7.54 -51.93 -0.39 0.83 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 32 H 0.04 0.36 8.03 -51.93 -0.42 -0.06 16 33 H 0.08 0.82 7.61 -51.93 -0.40 0.42 16 34 H 0.37 2.77 7.55 45.56 0.34 3.12 16 35 H 0.11 0.81 8.11 -51.93 -0.42 0.38 16 36 H 0.10 0.66 6.37 -51.93 -0.33 0.33 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 318.76 15.07 4.80 4.80 Total: -1.00 -30.26 318.76 -7.24 -37.50 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.42 Total: 0.08 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.63 Total: -9.39 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.36 Total: -43.51 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.33 Total: -5.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.26 -7.24 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304792597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.162 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds