Wall clock time and date at job start Sun Mar 29 2020 23:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99770 * 2 1 4 4 C 1.53003 * 109.46962 * 199.54369 * 3 2 1 5 5 H 1.09004 * 109.47328 * 304.93376 * 4 3 2 6 6 C 1.47206 * 109.46969 * 64.93339 * 4 3 2 7 7 N 3.66392 * 124.22986 * 281.16944 * 2 1 3 8 8 C 1.52999 * 109.47564 * 184.92783 * 4 3 2 9 9 C 1.50702 * 109.47317 * 174.99960 * 8 4 3 10 10 H 1.07999 * 120.00065 * 0.02562 * 9 8 4 11 11 C 1.37874 * 119.99681 * 179.72823 * 9 8 4 12 12 N 1.31513 * 120.00201 * 0.27940 * 11 9 8 13 13 Si 1.86806 * 119.99794 * 180.27896 * 11 9 8 14 14 H 1.48499 * 109.47270 * 59.99849 * 13 11 9 15 15 H 1.48497 * 109.47004 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46862 * 299.99820 * 13 11 9 17 17 C 1.46903 * 110.99754 * 123.95404 * 2 1 3 18 18 C 1.52997 * 109.47038 * 66.04430 * 17 2 1 19 19 H 1.08994 * 109.47277 * 304.99982 * 18 17 2 20 20 O 1.42898 * 109.46851 * 64.99917 * 18 17 2 21 21 C 1.52994 * 109.47042 * 184.99856 * 18 17 2 22 22 C 1.53007 * 117.50115 * 248.75071 * 21 18 17 23 23 C 1.52998 * 117.50089 * 180.08775 * 21 18 17 24 24 H 1.09004 * 109.46877 * 63.73965 * 1 2 3 25 25 H 1.08997 * 109.47622 * 183.73837 * 1 2 3 26 26 H 1.09000 * 109.47270 * 303.74774 * 1 2 3 27 27 H 1.08999 * 109.47514 * 79.54784 * 3 2 1 28 28 H 1.08999 * 109.47540 * 319.54386 * 3 2 1 29 29 H 1.09006 * 109.46594 * 55.00565 * 8 4 3 30 30 H 1.09000 * 109.47475 * 295.00604 * 8 4 3 31 31 H 0.97002 * 120.00027 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.46927 * 186.04604 * 17 2 1 33 33 H 1.08999 * 109.46942 * 306.04599 * 17 2 1 34 34 H 0.96704 * 114.00320 * 60.00419 * 20 18 17 35 35 H 1.09005 * 115.55225 * 34.41747 * 21 18 17 36 36 H 1.09001 * 117.49414 * 359.97438 * 22 21 18 37 37 H 1.08997 * 117.49663 * 145.02054 * 22 21 18 38 38 H 1.09003 * 117.50356 * 214.97779 * 23 21 18 39 39 H 1.08998 * 117.49863 * 0.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4473 1.3604 -0.4826 5 1 4.0290 0.6725 0.1312 6 6 3.4940 0.9238 -1.8876 7 7 3.5300 0.5868 -2.9719 8 6 4.0341 2.7686 -0.3664 9 6 5.4975 2.7341 -0.7247 10 1 5.9624 1.8012 -1.0074 11 6 6.2414 3.8947 -0.6975 12 7 5.6751 5.0307 -0.3536 13 14 8.0535 3.8533 -1.1492 14 1 8.2054 3.3624 -2.5424 15 1 8.6219 5.2209 -1.0409 16 1 8.7739 2.9436 -0.2225 17 6 1.9954 -0.7660 1.1376 18 6 1.6313 -2.2426 0.9704 19 1 0.5531 -2.3388 0.8433 20 8 2.2955 -2.7695 -0.1800 21 6 2.0698 -3.0199 2.2131 22 6 3.2245 -4.0112 2.0554 23 6 1.7941 -4.5246 2.2390 24 1 -0.3633 0.4547 -0.9217 25 1 -0.3634 -1.0254 0.0670 26 1 -0.3634 0.5709 0.8545 27 1 1.9515 1.7775 1.0106 28 1 1.3956 1.9909 -0.6668 29 1 3.9189 3.1269 0.6566 30 1 3.5090 3.4384 -1.0474 31 1 6.1984 5.8473 -0.3348 32 1 3.0797 -0.6611 1.1757 33 1 1.5610 -0.3872 2.0628 34 1 3.2601 -2.7167 -0.1359 35 1 1.9966 -2.4785 3.1564 36 1 3.6715 -4.1099 1.0662 37 1 3.9106 -4.1223 2.8951 38 1 1.5399 -4.9733 3.1993 39 1 1.3007 -4.9609 1.3705 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304792598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:08 Heat of formation + Delta-G solvation = -5.256951 kcal Electronic energy + Delta-G solvation = -18616.768677 eV Core-core repulsion = 15753.093320 eV Total energy + Delta-G solvation = -2863.675357 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.29411 -37.57022 -35.63888 -34.80643 -33.55049 -31.73083 -29.42065 -27.43688 -25.40663 -23.68528 -22.59276 -21.72246 -21.01618 -20.53282 -17.05699 -16.62072 -16.51748 -15.96511 -15.65076 -14.95322 -14.73576 -14.22036 -14.01065 -13.60822 -13.08077 -12.75277 -12.63182 -12.33690 -11.91811 -11.73699 -11.69858 -11.63289 -11.41014 -11.31328 -11.14223 -11.01311 -10.65096 -10.64878 -10.54206 -10.28682 -10.09836 -9.83448 -9.50286 -9.22407 -8.44895 -8.13912 -6.09087 -4.12232 3.31312 3.35699 3.39525 3.55112 3.78925 3.87057 3.95370 4.40594 4.47861 4.59660 4.73330 4.76466 4.95156 5.06515 5.12140 5.28970 5.29268 5.33296 5.47139 5.47690 5.60123 5.71687 5.76074 5.81173 5.92713 5.96572 5.97539 6.01403 6.07220 6.37385 6.51817 7.16261 7.17482 7.42721 7.53984 7.72407 7.86048 8.24023 8.66193 8.92413 9.53192 11.01824 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.004958 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.446008 B = 5645.833620 C = 6089.048577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.536 5.536 3 C 0.061 3.939 4 C 0.014 3.986 5 H 0.097 0.903 6 C 0.257 3.743 7 N -0.479 5.479 8 C 0.031 3.969 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.022 3.978 18 C 0.141 3.859 19 H 0.100 0.900 20 O -0.547 6.547 21 C -0.192 4.192 22 C -0.176 4.176 23 C -0.172 4.172 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.373 0.627 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.218 -13.281 8.750 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.068 4.068 4 C -0.008 4.008 5 H 0.114 0.886 6 C -0.060 4.060 7 N -0.156 5.156 8 C -0.008 4.008 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.106 4.106 18 C 0.081 3.919 19 H 0.117 0.883 20 O -0.352 6.352 21 C -0.211 4.211 22 C -0.213 4.213 23 C -0.209 4.209 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.221 0.779 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.589 -13.931 6.509 18.121 hybrid contribution 1.327 0.808 1.256 1.998 sum -8.261 -13.123 7.765 17.342 Atomic orbital electron populations 1.22411 0.87747 1.01493 1.00782 1.61921 1.07441 1.14130 1.42493 1.22264 0.95394 0.88327 1.00770 1.19184 0.95395 1.02034 0.84185 0.88569 1.28803 0.91255 0.91256 0.94706 1.80979 1.10357 1.11241 1.13013 1.19174 0.95810 0.87184 0.98616 1.21100 0.94237 0.94397 1.46647 0.92566 1.24946 0.98543 0.95442 0.94976 1.69928 1.36451 0.98872 1.47853 0.86660 0.85108 0.77102 0.79252 1.20187 1.21200 1.20076 1.22878 1.01648 0.94032 0.92033 1.21407 0.97241 0.90042 0.83209 0.88274 1.86600 1.23603 1.83922 1.41114 1.23161 1.04764 0.92453 1.00745 1.22962 0.91448 1.03503 1.03420 1.22898 0.99296 0.95768 1.02916 0.91403 0.91559 0.95753 0.92773 0.90319 0.94577 0.95605 0.92756 0.89664 0.93928 0.77908 0.87334 0.88101 0.88846 0.89130 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.36 60.07 0.56 0.84 16 2 N -0.54 -7.28 4.34 -242.92 -1.05 -8.33 16 3 C 0.06 0.92 4.36 -3.83 -0.02 0.90 16 4 C 0.01 0.26 2.26 -93.40 -0.21 0.05 16 5 H 0.10 1.67 6.65 -51.93 -0.35 1.32 16 6 C 0.26 5.47 13.67 -20.76 -0.28 5.19 16 7 N -0.48 -11.14 18.54 42.15 0.78 -10.36 16 8 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 9 C -0.53 -13.98 8.60 -34.44 -0.30 -14.28 16 10 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 13 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.02 0.26 4.41 -3.82 -0.02 0.24 16 18 C 0.14 1.50 3.30 -26.74 -0.09 1.41 16 19 H 0.10 1.07 6.20 -51.93 -0.32 0.74 16 20 O -0.55 -6.98 12.44 -35.23 -0.44 -7.42 16 21 C -0.19 -1.73 5.70 -90.62 -0.52 -2.25 16 22 C -0.18 -1.53 9.74 -26.69 -0.26 -1.79 16 23 C -0.17 -1.47 10.19 -26.69 -0.27 -1.75 16 24 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 25 H 0.07 0.70 6.07 -51.93 -0.32 0.38 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.75 8.00 -51.93 -0.42 0.33 16 28 H 0.08 1.21 7.93 -51.93 -0.41 0.79 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.09 1.02 6.56 -51.93 -0.34 0.68 16 33 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.37 4.09 7.56 45.56 0.34 4.43 16 35 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 36 H 0.10 0.89 6.37 -51.93 -0.33 0.56 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -30.85 325.41 -7.18 -38.03 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.47 Total: 0.92 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.62 Total: -9.21 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.46 Total: -43.48 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.44 Total: -7.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.85 -7.18 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304792598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.775 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds