Wall clock time and date at job start Sun Mar 29 2020 23:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21275 * 119.99689 * 2 1 4 4 N 1.34771 * 119.99961 * 179.97438 * 2 1 3 5 5 C 1.47681 * 125.79883 * 0.02562 * 4 2 1 6 6 C 1.55674 * 104.33431 * 205.44072 * 5 4 2 7 7 H 1.08996 * 112.69436 * 200.87802 * 6 5 4 8 8 C 1.52919 * 107.11915 * 76.79491 * 6 5 4 9 9 C 1.52658 * 109.93774 * 193.89144 * 8 6 5 10 10 C 1.51792 * 111.16048 * 60.33802 * 9 8 6 11 11 C 1.50788 * 113.10331 * 307.58069 * 10 9 8 12 12 H 1.09003 * 108.16983 * 164.60027 * 11 10 9 13 13 N 1.46503 * 108.16376 * 281.18363 * 11 10 9 14 14 C 1.36936 * 120.00149 * 281.44759 * 13 11 10 15 15 H 1.08002 * 119.99621 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00035 * 180.02562 * 14 13 11 17 17 N 1.31618 * 120.00011 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99919 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46968 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47181 * 119.99966 * 18 16 14 21 21 H 1.48496 * 109.47281 * 239.99839 * 18 16 14 22 22 C 1.49868 * 116.05175 * 42.89137 * 11 10 9 23 23 H 1.09003 * 108.77826 * 197.11879 * 22 11 10 24 24 C 1.47489 * 125.79644 * 179.72382 * 4 2 1 25 25 H 1.09001 * 109.46953 * 90.00217 * 1 2 3 26 26 H 1.09000 * 109.47318 * 209.99815 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.00445 * 1 2 3 28 28 H 1.08998 * 110.46112 * 324.15960 * 5 4 2 29 29 H 1.09004 * 110.45786 * 86.72862 * 5 4 2 30 30 H 1.09006 * 109.35706 * 313.38014 * 8 6 5 31 31 H 1.08998 * 109.36253 * 72.96941 * 8 6 5 32 32 H 1.09003 * 108.72796 * 300.02653 * 9 8 6 33 33 H 1.09006 * 109.15748 * 180.92805 * 9 8 6 34 34 H 1.09008 * 108.75889 * 186.64245 * 10 9 8 35 35 H 1.09004 * 108.76109 * 68.51560 * 10 9 8 36 36 H 0.97002 * 119.99640 * 101.45349 * 13 11 10 37 37 H 0.96997 * 119.99891 * 179.97438 * 17 16 14 38 38 H 1.09004 * 110.03621 * 298.07735 * 24 4 2 39 39 H 1.08998 * 110.04065 * 59.52049 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5755 -2.5142 0.0006 6 6 2.6596 -3.4239 0.6491 7 1 2.5282 -4.4771 0.4008 8 6 2.6157 -3.1717 2.1567 9 6 3.8606 -3.7567 2.8188 10 6 5.1240 -3.1186 2.2704 11 6 5.2010 -3.1575 0.7650 12 1 5.9719 -2.4560 0.4458 13 7 5.6228 -4.5019 0.3638 14 6 6.9416 -4.8602 0.4507 15 1 7.6708 -4.1515 0.8146 16 6 7.3412 -6.1339 0.0701 17 7 6.4525 -6.9973 -0.3739 18 14 9.1403 -6.6224 0.1879 19 1 9.9300 -5.4801 0.7141 20 1 9.2791 -7.7831 1.1039 21 1 9.6421 -6.9927 -1.1598 22 6 3.9361 -2.8266 0.0325 23 1 4.0241 -3.1772 -0.9959 24 6 3.6482 -1.3161 -0.0052 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 0.6640 -2.5222 0.5982 29 1 1.3665 -2.8380 -1.0190 30 1 2.5888 -2.0980 2.3428 31 1 1.7198 -3.6312 2.5741 32 1 3.8874 -4.8294 2.6276 33 1 3.8084 -3.5845 3.8939 34 1 5.9877 -3.6433 2.6792 35 1 5.1619 -2.0792 2.5965 36 1 4.9678 -5.1382 0.0365 37 1 6.7319 -7.8872 -0.6402 38 1 4.0647 -0.8769 -0.9117 39 1 4.0760 -0.8346 0.8741 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309411039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:14 Heat of formation + Delta-G solvation = -31.902446 kcal Electronic energy + Delta-G solvation = -19511.319834 eV Core-core repulsion = 16646.489041 eV Total energy + Delta-G solvation = -2864.830792 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51350 -38.50516 -35.61342 -33.51078 -31.69570 -31.16520 -29.75695 -28.74658 -26.54177 -24.56695 -22.89352 -21.93763 -21.08436 -19.28309 -17.95776 -17.18465 -16.75539 -16.14472 -15.36224 -14.99312 -14.52994 -14.12680 -13.96034 -13.58903 -13.42444 -13.01588 -12.73229 -12.48116 -12.45421 -12.17995 -11.83786 -11.69213 -11.30547 -11.22421 -10.93720 -10.85402 -10.73585 -10.13550 -10.04332 -9.88249 -9.77820 -9.60315 -9.52470 -8.86596 -8.57341 -6.94449 -5.77191 -3.04873 2.65445 3.04591 3.42745 3.49286 3.50748 4.46530 4.59248 4.60672 4.86805 4.94659 5.11513 5.24776 5.29598 5.37334 5.42691 5.56384 5.60326 5.66127 5.67174 5.78925 5.82581 5.92069 5.96272 6.06396 6.18585 6.23314 6.29023 6.40532 6.42719 6.52365 6.81380 6.82026 7.00006 7.15507 7.57878 7.71019 8.18147 8.41795 9.53493 10.10587 10.46224 11.45708 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038191 B = 0.005256 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.972376 B = 5326.206031 C = 5428.953978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.522 3.478 3 O -0.555 6.555 4 N -0.615 5.615 5 C 0.098 3.902 6 C -0.089 4.089 7 H 0.101 0.899 8 C -0.107 4.107 9 C -0.108 4.108 10 C -0.126 4.126 11 C 0.188 3.812 12 H 0.042 0.958 13 N -0.725 5.725 14 C -0.234 4.234 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.934 5.934 18 Si 0.903 3.097 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.090 4.090 23 H 0.082 0.918 24 C 0.115 3.885 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.382 0.618 37 H 0.253 0.747 38 H 0.066 0.934 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 8.281 2.526 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.311 3.689 3 O -0.433 6.433 4 N -0.349 5.349 5 C -0.025 4.025 6 C -0.108 4.108 7 H 0.120 0.880 8 C -0.145 4.145 9 C -0.146 4.146 10 C -0.166 4.166 11 C 0.079 3.921 12 H 0.060 0.940 13 N -0.368 5.368 14 C -0.365 4.365 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.582 5.582 18 Si 0.735 3.265 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.110 4.110 23 H 0.100 0.900 24 C -0.008 4.008 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.216 0.784 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.521 8.928 2.537 15.586 hybrid contribution 0.800 -0.681 -0.093 1.055 sum -11.721 8.247 2.444 14.538 Atomic orbital electron populations 1.21888 0.91828 1.04639 1.04548 1.20438 0.90239 0.82159 0.76025 1.90711 1.70851 1.30810 1.50947 1.48749 1.07853 1.05816 1.72500 1.22743 0.97004 0.81917 1.00829 1.22276 0.93657 0.99343 0.95526 0.88041 1.21428 0.98180 1.00731 0.94149 1.21020 0.94187 1.01274 0.98099 1.21425 0.98129 0.98586 0.98445 1.18972 0.92250 0.89401 0.91485 0.94017 1.42539 1.06737 1.09548 1.77930 1.19269 0.84998 0.96484 1.35777 0.91211 1.24690 0.97419 0.96598 1.02195 1.69661 1.32243 1.06083 1.50257 0.86170 0.85076 0.78121 0.77162 1.20606 1.21974 1.21966 1.21469 0.95436 0.92697 1.01374 0.89978 1.22018 0.79764 0.97082 1.01926 0.89035 0.90173 0.89141 0.90540 0.91212 0.92502 0.92449 0.91547 0.93313 0.91080 0.94505 0.78408 0.93661 0.91547 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.91 36.01 0.36 -1.12 16 2 C 0.52 7.16 7.97 -10.98 -0.09 7.07 16 3 O -0.55 -10.01 17.44 5.56 0.10 -9.91 16 4 N -0.61 -8.11 2.91 -169.77 -0.49 -8.60 16 5 C 0.10 1.06 6.01 -1.97 -0.01 1.04 16 6 C -0.09 -1.17 3.59 -88.80 -0.32 -1.49 16 7 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 8 C -0.11 -1.40 4.97 -26.95 -0.13 -1.53 16 9 C -0.11 -1.67 5.87 -27.52 -0.16 -1.83 16 10 C -0.13 -2.20 5.36 -28.45 -0.15 -2.36 16 11 C 0.19 3.54 2.24 -70.59 -0.16 3.38 16 12 H 0.04 0.84 7.97 -51.93 -0.41 0.42 16 13 N -0.73 -17.06 5.00 -56.04 -0.28 -17.34 16 14 C -0.23 -6.26 9.41 -15.06 -0.14 -6.40 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 18 Si 0.90 22.08 29.55 -169.99 -5.02 17.05 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 C -0.09 -1.41 2.04 -91.32 -0.19 -1.59 16 23 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 24 C 0.11 1.71 5.87 -3.08 -0.02 1.69 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.55 6.51 -51.93 -0.34 0.21 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.65 6.59 -51.93 -0.34 0.31 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.76 7.22 -51.93 -0.37 0.39 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.42 7.62 -51.92 -0.40 1.02 16 35 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.38 9.51 7.73 -40.82 -0.32 9.20 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.08 7.86 -51.93 -0.41 0.67 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -31.24 306.98 -7.82 -39.06 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.36 Total: 5.39 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.11 Total: -3.60 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.05 Total: -52.62 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.10 Total: -9.91 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.24 -7.82 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309411039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.155 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds