Wall clock time and date at job start Sun Mar 29 2020 23:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21285 * 120.00000 * 2 1 4 4 N 1.34774 * 120.00249 * 179.97438 * 2 1 3 5 5 C 1.47171 * 125.64756 * 359.97438 * 4 2 1 6 6 C 1.55346 * 106.96717 * 180.99811 * 5 4 2 7 7 H 1.09000 * 112.90644 * 214.96919 * 6 5 4 8 8 C 1.52997 * 106.41811 * 91.60121 * 6 5 4 9 9 C 1.52587 * 111.05571 * 197.20711 * 8 6 5 10 10 C 1.53333 * 108.40688 * 62.35467 * 9 8 6 11 11 C 1.52826 * 108.09789 * 295.87961 * 10 9 8 12 12 H 1.09000 * 109.02254 * 298.33116 * 11 10 9 13 13 N 1.46497 * 109.02482 * 179.49958 * 11 10 9 14 14 C 1.36930 * 120.00359 * 82.76366 * 13 11 10 15 15 H 1.08005 * 120.00090 * 359.97438 * 14 13 11 16 16 C 1.38807 * 120.00415 * 179.97438 * 14 13 11 17 17 N 1.31628 * 119.99570 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00480 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46857 * 90.00172 * 18 16 14 20 20 H 1.48498 * 109.47284 * 210.00279 * 18 16 14 21 21 H 1.48496 * 109.46947 * 330.00454 * 18 16 14 22 22 C 1.50729 * 111.74309 * 58.91320 * 11 10 9 23 23 H 1.08999 * 109.26946 * 186.24049 * 22 11 10 24 24 C 1.47818 * 125.65016 * 180.02562 * 4 2 1 25 25 H 1.09003 * 109.47135 * 270.00326 * 1 2 3 26 26 H 1.09007 * 109.47389 * 29.99936 * 1 2 3 27 27 H 1.08993 * 109.47290 * 150.00088 * 1 2 3 28 28 H 1.08998 * 109.96144 * 61.61652 * 5 4 2 29 29 H 1.09000 * 109.96564 * 300.37477 * 5 4 2 30 30 H 1.08998 * 109.17049 * 317.61643 * 8 6 5 31 31 H 1.09008 * 109.16462 * 76.80511 * 8 6 5 32 32 H 1.08996 * 109.68685 * 182.08741 * 9 8 6 33 33 H 1.09005 * 109.67567 * 302.62996 * 9 8 6 34 34 H 1.08999 * 109.73608 * 55.52823 * 10 9 8 35 35 H 1.09002 * 109.73876 * 176.18187 * 10 9 8 36 36 H 0.97003 * 119.99579 * 262.76088 * 13 11 10 37 37 H 0.97001 * 119.99455 * 179.97438 * 17 16 14 38 38 H 1.08997 * 110.51475 * 84.67387 * 24 4 2 39 39 H 1.09001 * 110.51260 * 321.95361 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5741 -2.5079 0.0017 6 6 2.7406 -3.5335 0.0278 7 1 2.5249 -4.4360 -0.5440 8 6 3.0156 -3.8382 1.5017 9 6 4.3848 -4.4874 1.6811 10 6 5.4560 -3.4952 1.2130 11 6 5.2614 -3.2577 -0.2841 12 1 5.3960 -4.2008 -0.8139 13 7 6.2687 -2.3019 -0.7509 14 6 7.5288 -2.7348 -1.0671 15 1 7.7802 -3.7808 -0.9719 16 6 8.4831 -1.8292 -1.5099 17 7 8.1768 -0.5543 -1.6253 18 14 10.2022 -2.4196 -1.9405 19 1 10.2516 -2.7944 -3.3766 20 1 11.1791 -1.3322 -1.6788 21 1 10.5426 -3.6015 -1.1085 22 6 3.8892 -2.7140 -0.5895 23 1 3.7541 -2.6645 -1.6699 24 6 3.6519 -1.3126 0.0011 25 1 -0.3633 0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 0.9766 -2.6467 -0.8994 29 1 0.9490 -2.6328 0.8858 30 1 2.9825 -2.9096 2.0714 31 1 2.2472 -4.5144 1.8767 32 1 4.5420 -4.7283 2.7324 33 1 4.4408 -5.3971 1.0833 34 1 5.3470 -2.5542 1.7522 35 1 6.4472 -3.9108 1.3947 36 1 6.0430 -1.3623 -0.8360 37 1 8.8438 0.0786 -1.9344 38 1 4.0409 -1.2557 1.0177 39 1 4.1113 -0.5503 -0.6280 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309411047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:27 Heat of formation + Delta-G solvation = -33.910096 kcal Electronic energy + Delta-G solvation = -19528.977835 eV Core-core repulsion = 16664.059984 eV Total energy + Delta-G solvation = -2864.917851 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48221 -38.44045 -35.42081 -33.83383 -31.60944 -31.08609 -29.58303 -28.52396 -26.51941 -24.31340 -23.38077 -21.69893 -20.76375 -19.25084 -18.40534 -17.19607 -16.62069 -16.05687 -15.31898 -14.94021 -14.55449 -13.96688 -13.85469 -13.55760 -13.47361 -13.02988 -12.67149 -12.55869 -12.42904 -12.17771 -11.81403 -11.68677 -11.28449 -11.05876 -10.98508 -10.84292 -10.69848 -10.20839 -10.15840 -9.96893 -9.70193 -9.66960 -9.50505 -8.85169 -8.44308 -6.93639 -5.73223 -3.02857 2.77428 3.15629 3.45202 3.50036 3.52266 4.49248 4.53950 4.64643 4.83100 4.93528 5.15418 5.27527 5.32321 5.34913 5.43111 5.44817 5.59826 5.64780 5.73688 5.78087 5.79380 5.86222 5.92431 6.04973 6.09226 6.27172 6.30771 6.36983 6.43538 6.53800 6.60955 6.75662 6.92691 7.12934 7.69494 7.72251 8.31340 8.44643 9.55680 10.12707 10.46975 11.49171 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.006367 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.400423 B = 4396.801942 C = 5277.132990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.520 3.480 3 O -0.546 6.546 4 N -0.619 5.619 5 C 0.103 3.897 6 C -0.090 4.090 7 H 0.096 0.904 8 C -0.111 4.111 9 C -0.118 4.118 10 C -0.135 4.135 11 C 0.191 3.809 12 H 0.049 0.951 13 N -0.727 5.727 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.095 4.095 23 H 0.076 0.924 24 C 0.114 3.886 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.071 0.929 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.537 -7.288 5.189 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.308 3.692 3 O -0.424 6.424 4 N -0.354 5.354 5 C -0.020 4.020 6 C -0.109 4.109 7 H 0.114 0.886 8 C -0.148 4.148 9 C -0.156 4.156 10 C -0.176 4.176 11 C 0.081 3.919 12 H 0.067 0.933 13 N -0.368 5.368 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.115 4.115 23 H 0.094 0.906 24 C -0.007 4.007 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.097 -6.707 5.134 18.179 hybrid contribution 0.889 -0.002 -0.269 0.929 sum -15.208 -6.709 4.865 17.320 Atomic orbital electron populations 1.21871 0.91979 1.04550 1.04354 1.20436 0.90169 0.82324 0.76222 1.90752 1.70731 1.30655 1.50236 1.48752 1.08225 1.05426 1.72970 1.22381 0.96200 0.82359 1.01103 1.22244 0.94156 0.97290 0.97236 0.88586 1.21548 0.97578 1.00669 0.95036 1.21533 0.94858 0.98927 1.00326 1.22310 0.97948 0.98207 0.99113 1.19562 0.86221 0.93675 0.92446 0.93332 1.42527 1.08760 1.06662 1.78850 1.19214 0.87908 0.93319 1.36626 0.91179 1.24748 0.98322 0.95450 1.02371 1.69672 1.34075 1.01197 1.52983 0.86218 0.84636 0.77356 0.78133 1.21790 1.21833 1.20798 1.21751 0.95602 0.93705 1.00409 0.90570 1.22192 0.78897 0.97901 1.01722 0.89172 0.89120 0.90406 0.91723 0.91402 0.92050 0.92482 0.92722 0.92180 0.92507 0.91786 0.78166 0.93479 0.91087 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.90 36.00 0.36 -1.27 16 2 C 0.52 7.98 7.96 -10.99 -0.09 7.89 16 3 O -0.55 -11.15 17.38 5.55 0.10 -11.05 16 4 N -0.62 -8.99 3.34 -170.06 -0.57 -9.56 16 5 C 0.10 1.09 5.41 -2.43 -0.01 1.08 16 6 C -0.09 -1.04 3.61 -88.85 -0.32 -1.37 16 7 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 8 C -0.11 -1.25 4.62 -26.94 -0.12 -1.38 16 9 C -0.12 -1.53 5.93 -26.77 -0.16 -1.68 16 10 C -0.14 -2.32 5.33 -26.65 -0.14 -2.46 16 11 C 0.19 3.61 2.46 -69.16 -0.17 3.44 16 12 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 13 N -0.73 -17.89 5.03 -54.63 -0.27 -18.16 16 14 C -0.24 -6.57 9.89 -15.06 -0.15 -6.72 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 18 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.09 -1.51 2.49 -90.76 -0.23 -1.73 16 23 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 24 C 0.11 1.99 5.08 -2.84 -0.01 1.97 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.58 7.13 -51.93 -0.37 0.21 16 28 H 0.06 0.58 7.86 -51.93 -0.41 0.17 16 29 H 0.07 0.59 7.74 -51.93 -0.40 0.19 16 30 H 0.06 0.76 7.15 -51.93 -0.37 0.39 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.03 6.80 -51.93 -0.35 0.68 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.38 10.22 6.44 -40.82 -0.26 9.96 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.07 1.29 6.15 -51.93 -0.32 0.97 16 39 H 0.08 1.73 7.42 -51.93 -0.39 1.35 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -32.83 303.89 -7.83 -40.66 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.22 Total: 6.58 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.15 Total: -2.70 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.12 Total: -55.53 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.10 Total: -11.05 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.83 -7.83 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309411047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.754 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds