Wall clock time and date at job start Sun Mar 29 2020 23:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46803 * 2 1 4 4 C 1.50700 * 109.47087 * 240.00444 * 2 1 3 5 5 H 1.08005 * 119.99521 * 245.60119 * 4 2 1 6 6 C 1.37874 * 120.00091 * 65.59828 * 4 2 1 7 7 N 1.31521 * 119.99716 * 197.92766 * 6 4 2 8 8 Si 1.86795 * 120.00261 * 18.20169 * 6 4 2 9 9 H 1.48496 * 109.47398 * 179.72393 * 8 6 4 10 10 H 1.48501 * 109.47275 * 299.72648 * 8 6 4 11 11 H 1.48498 * 109.46928 * 59.72276 * 8 6 4 12 12 N 1.46897 * 109.47054 * 119.99772 * 2 1 3 13 13 C 1.46893 * 111.00122 * 274.99754 * 12 2 1 14 14 C 1.50703 * 109.47019 * 181.87885 * 13 12 2 15 15 N 1.30836 * 125.96330 * 81.47506 * 14 13 12 16 16 C 1.33239 * 109.83102 * 180.02562 * 15 14 13 17 17 N 1.30716 * 108.94497 * 359.97438 * 16 15 14 18 18 N 1.34434 * 125.96344 * 261.16701 * 14 13 12 19 19 C 1.46500 * 126.81990 * 0.02562 * 18 14 13 20 20 C 1.53001 * 109.47351 * 54.18174 * 19 18 14 21 21 C 1.53001 * 109.47120 * 174.18598 * 19 18 14 22 22 C 1.53007 * 109.47027 * 294.18250 * 19 18 14 23 23 H 1.09000 * 109.46927 * 295.28817 * 1 2 3 24 24 H 1.08996 * 109.47047 * 55.28809 * 1 2 3 25 25 H 1.08993 * 109.46991 * 175.29037 * 1 2 3 26 26 H 0.96997 * 120.00196 * 355.23668 * 7 6 4 27 27 H 1.00896 * 111.00027 * 38.95757 * 12 2 1 28 28 H 1.08998 * 109.47601 * 301.87949 * 13 12 2 29 29 H 1.09004 * 109.47067 * 61.88720 * 13 12 2 30 30 H 1.07996 * 125.52767 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.46816 * 52.37600 * 20 19 18 32 32 H 1.09002 * 109.47229 * 172.36820 * 20 19 18 33 33 H 1.08996 * 109.47237 * 292.37587 * 20 19 18 34 34 H 1.08998 * 109.47458 * 59.99702 * 21 19 18 35 35 H 1.09000 * 109.47275 * 179.97438 * 21 19 18 36 36 H 1.09002 * 109.47126 * 299.99980 * 21 19 18 37 37 H 1.09001 * 109.46878 * 62.62353 * 22 19 18 38 38 H 1.09004 * 109.46725 * 182.62440 * 22 19 18 39 39 H 1.08997 * 109.47281 * 302.62122 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5767 -1.6382 -1.1340 6 6 1.7971 -0.1757 -2.4794 7 7 1.9078 -0.9319 -3.5498 8 14 1.3287 1.6243 -2.6519 9 1 1.1379 1.9508 -4.0879 10 1 0.0655 1.8800 -1.9140 11 1 2.4102 2.4731 -2.0906 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.6315 -0.5098 3.5440 15 7 3.8959 -0.7357 3.7933 16 6 4.0179 -1.4098 4.9360 17 7 2.8275 -1.6228 5.4323 18 7 1.9078 -1.0401 4.5452 19 6 0.4493 -1.0184 4.6814 20 6 -0.1897 -1.5956 3.4168 21 6 0.0375 -1.8601 5.8909 22 6 -0.0230 0.4235 4.8790 23 1 -0.3633 0.4390 0.9292 24 1 -0.3633 0.5852 -0.8447 25 1 -0.3633 -1.0241 -0.0844 26 1 2.2215 -1.8460 -3.4676 27 1 1.4496 -1.4979 1.4100 28 1 2.7328 1.0635 2.1058 29 1 1.0818 0.5904 2.5735 30 1 4.9493 -1.7279 5.3806 31 1 0.2480 -2.5702 3.2009 32 1 -1.2633 -1.7055 3.5699 33 1 -0.0092 -0.9225 2.5787 34 1 0.4927 -1.4489 6.7918 35 1 -1.0477 -1.8436 5.9925 36 1 0.3740 -2.8873 5.7502 37 1 0.2294 1.0125 3.9972 38 1 -1.1029 0.4350 5.0269 39 1 0.4681 0.8501 5.7536 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309514196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:41 Heat of formation + Delta-G solvation = 89.709191 kcal Electronic energy + Delta-G solvation = -19479.655442 eV Core-core repulsion = 16652.390877 eV Total energy + Delta-G solvation = -2827.264565 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.04023 -37.49385 -36.35147 -32.94121 -31.39014 -31.05762 -29.03550 -27.73160 -27.64191 -25.41349 -24.47403 -22.74696 -20.93582 -20.06688 -19.38112 -17.56929 -16.58482 -15.84759 -15.37538 -14.88241 -14.54684 -14.14706 -14.05296 -13.57516 -13.34994 -12.74898 -12.69323 -12.64159 -12.44353 -12.18407 -12.10779 -11.93795 -11.91488 -11.53812 -11.47585 -11.13948 -10.80162 -10.53534 -9.96874 -9.79926 -9.68790 -9.55905 -9.33311 -9.01056 -8.20277 -7.60459 -6.43173 -4.01641 1.77093 2.32374 3.18152 3.32378 3.42332 3.57874 4.21255 4.32298 4.47842 4.49212 4.60814 4.84085 4.88556 5.17133 5.22665 5.26997 5.31087 5.42865 5.45953 5.48962 5.54021 5.61459 5.81870 5.89051 5.94741 6.00690 6.16184 6.29341 6.46977 6.51452 6.65552 6.72336 6.99034 7.09237 7.63712 8.10484 8.21331 8.36775 8.46337 9.02527 9.65865 10.96901 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.005987 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.078926 B = 4675.708483 C = 5062.188101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.190 3.810 3 H 0.030 0.970 4 C -0.582 4.582 5 H 0.063 0.937 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 1.044 2.956 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.282 1.282 12 N -0.661 5.661 13 C 0.127 3.873 14 C 0.296 3.704 15 N -0.527 5.527 16 C 0.190 3.810 17 N -0.328 5.328 18 N -0.370 5.370 19 C 0.177 3.823 20 C -0.174 4.174 21 C -0.139 4.139 22 C -0.165 4.165 23 H 0.019 0.981 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.268 0.732 27 H 0.330 0.670 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.213 0.787 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.929 2.133 17.829 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.082 3.918 3 H 0.048 0.952 4 C -0.621 4.621 5 H 0.082 0.918 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.873 3.127 9 H -0.211 1.211 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.293 5.293 13 C -0.005 4.005 14 C 0.019 3.981 15 N -0.254 5.254 16 C -0.112 4.112 17 N -0.156 5.156 18 N -0.162 5.162 19 C 0.093 3.907 20 C -0.232 4.232 21 C -0.197 4.197 22 C -0.223 4.223 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.635 3.080 17.028 18.199 hybrid contribution -0.497 -1.143 1.288 1.792 sum -6.132 1.937 18.316 19.412 Atomic orbital electron populations 1.22988 1.01037 1.01283 0.99319 1.19574 0.89048 0.94720 0.88496 0.95210 1.21917 1.39702 1.10452 0.90021 0.91835 1.25683 0.94970 1.04952 0.92076 1.70850 1.42229 1.09658 1.31451 0.84074 0.76802 0.75701 0.76139 1.21096 1.20324 1.20868 1.60700 1.58507 1.08295 1.01770 1.20683 0.98526 0.95292 0.86027 1.24410 0.87191 0.94862 0.91608 1.70529 1.17167 1.21041 1.16712 1.25933 0.96716 0.96898 0.91703 1.77898 0.99413 1.21677 1.16581 1.50686 1.07009 1.41606 1.16917 1.20792 0.74395 0.97398 0.98076 1.22542 1.01693 1.02579 0.96399 1.21883 1.01325 1.00210 0.96264 1.22374 1.02459 0.94163 1.03308 0.96158 0.91861 0.93159 0.92191 0.85152 0.88036 0.93617 0.77090 0.91206 0.89865 0.90508 0.91352 0.90954 0.91450 0.91109 0.89983 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.73 8.39 37.16 0.31 -3.42 16 2 C 0.19 4.30 2.16 -68.86 -0.15 4.15 16 3 H 0.03 0.68 6.41 -51.93 -0.33 0.35 16 4 C -0.58 -16.15 9.10 -34.44 -0.31 -16.46 16 5 H 0.06 1.96 8.06 -52.48 -0.42 1.54 16 6 C 0.03 0.80 5.34 -17.82 -0.10 0.70 16 7 N -0.91 -27.62 13.70 55.43 0.76 -26.86 16 8 Si 1.04 24.44 26.44 -169.99 -4.49 19.94 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -5.83 5.53 56.52 0.31 -5.52 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.66 -13.43 6.07 -109.22 -0.66 -14.09 16 13 C 0.13 2.14 4.87 -4.98 -0.02 2.12 16 14 C 0.30 5.01 7.06 -155.69 -1.10 3.91 16 15 N -0.53 -9.56 11.19 -11.97 -0.13 -9.70 16 16 C 0.19 2.91 13.03 -91.81 -1.20 1.72 16 17 N -0.33 -5.06 11.82 29.29 0.35 -4.72 16 18 N -0.37 -5.49 3.47 -45.70 -0.16 -5.64 16 19 C 0.18 2.04 1.06 -131.81 -0.14 1.90 16 20 C -0.17 -1.99 7.57 37.16 0.28 -1.71 16 21 C -0.14 -1.37 8.04 37.16 0.30 -1.07 16 22 C -0.16 -1.60 8.52 37.16 0.32 -1.28 16 23 H 0.02 0.33 6.66 -51.93 -0.35 -0.02 16 24 H 0.06 1.33 4.85 -51.93 -0.25 1.07 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 27 H 0.33 6.43 6.71 -39.29 -0.26 6.17 16 28 H 0.10 1.76 8.01 -51.93 -0.42 1.34 16 29 H 0.05 0.67 3.40 -51.93 -0.18 0.49 16 30 H 0.21 2.36 8.06 -52.49 -0.42 1.94 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.74 8.13 -51.93 -0.42 0.31 16 33 H 0.08 0.99 3.28 -51.93 -0.17 0.82 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.73 5.68 -51.93 -0.29 0.44 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 302.53 15.07 4.56 4.56 Total: -1.00 -32.08 302.53 -7.31 -39.39 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.72 Total: 6.57 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.81 Total: -9.45 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.15 Total: -61.02 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.49 Total: 19.94 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.08 -7.31 -39.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309514196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.099 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds