Wall clock time and date at job start Sun Mar 29 2020 23:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46803 * 2 1 4 4 C 1.50700 * 109.47087 * 240.00444 * 2 1 3 5 5 H 1.08005 * 119.99521 * 245.60119 * 4 2 1 6 6 C 1.37874 * 120.00091 * 65.59828 * 4 2 1 7 7 N 1.31521 * 119.99716 * 197.92766 * 6 4 2 8 8 Si 1.86795 * 120.00261 * 18.20169 * 6 4 2 9 9 H 1.48496 * 109.47398 * 179.72393 * 8 6 4 10 10 H 1.48501 * 109.47275 * 299.72648 * 8 6 4 11 11 H 1.48498 * 109.46928 * 59.72276 * 8 6 4 12 12 N 1.46897 * 109.47054 * 119.99772 * 2 1 3 13 13 C 1.46893 * 111.00122 * 274.99754 * 12 2 1 14 14 C 1.50703 * 109.47019 * 181.87885 * 13 12 2 15 15 N 1.30836 * 125.96330 * 81.47506 * 14 13 12 16 16 C 1.33239 * 109.83102 * 180.02562 * 15 14 13 17 17 N 1.30716 * 108.94497 * 359.97438 * 16 15 14 18 18 N 1.34434 * 125.96344 * 261.16701 * 14 13 12 19 19 C 1.46500 * 126.81990 * 0.02562 * 18 14 13 20 20 C 1.53001 * 109.47351 * 54.18174 * 19 18 14 21 21 C 1.53001 * 109.47120 * 174.18598 * 19 18 14 22 22 C 1.53007 * 109.47027 * 294.18250 * 19 18 14 23 23 H 1.09000 * 109.46927 * 295.28817 * 1 2 3 24 24 H 1.08996 * 109.47047 * 55.28809 * 1 2 3 25 25 H 1.08993 * 109.46991 * 175.29037 * 1 2 3 26 26 H 0.96997 * 120.00196 * 355.23668 * 7 6 4 27 27 H 1.00896 * 111.00027 * 38.95757 * 12 2 1 28 28 H 1.08998 * 109.47601 * 301.87949 * 13 12 2 29 29 H 1.09004 * 109.47067 * 61.88720 * 13 12 2 30 30 H 1.07996 * 125.52767 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.46816 * 52.37600 * 20 19 18 32 32 H 1.09002 * 109.47229 * 172.36820 * 20 19 18 33 33 H 1.08996 * 109.47237 * 292.37587 * 20 19 18 34 34 H 1.08998 * 109.47458 * 59.99702 * 21 19 18 35 35 H 1.09000 * 109.47275 * 179.97438 * 21 19 18 36 36 H 1.09002 * 109.47126 * 299.99980 * 21 19 18 37 37 H 1.09001 * 109.46878 * 62.62353 * 22 19 18 38 38 H 1.09004 * 109.46725 * 182.62440 * 22 19 18 39 39 H 1.08997 * 109.47281 * 302.62122 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5767 -1.6382 -1.1340 6 6 1.7971 -0.1757 -2.4794 7 7 1.9078 -0.9319 -3.5498 8 14 1.3287 1.6243 -2.6519 9 1 1.1379 1.9508 -4.0879 10 1 0.0655 1.8800 -1.9140 11 1 2.4102 2.4731 -2.0906 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.6315 -0.5098 3.5440 15 7 3.8959 -0.7357 3.7933 16 6 4.0179 -1.4098 4.9360 17 7 2.8275 -1.6228 5.4323 18 7 1.9078 -1.0401 4.5452 19 6 0.4493 -1.0184 4.6814 20 6 -0.1897 -1.5956 3.4168 21 6 0.0375 -1.8601 5.8909 22 6 -0.0230 0.4235 4.8790 23 1 -0.3633 0.4390 0.9292 24 1 -0.3633 0.5852 -0.8447 25 1 -0.3633 -1.0241 -0.0844 26 1 2.2215 -1.8460 -3.4676 27 1 1.4496 -1.4979 1.4100 28 1 2.7328 1.0635 2.1058 29 1 1.0818 0.5904 2.5735 30 1 4.9493 -1.7279 5.3806 31 1 0.2480 -2.5702 3.2009 32 1 -1.2633 -1.7055 3.5699 33 1 -0.0092 -0.9225 2.5787 34 1 0.4927 -1.4489 6.7918 35 1 -1.0477 -1.8436 5.9925 36 1 0.3740 -2.8873 5.7502 37 1 0.2294 1.0125 3.9972 38 1 -1.1029 0.4350 5.0269 39 1 0.4681 0.8501 5.7536 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309514196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:40 Heat of formation + Delta-G solvation = 67.510532 kcal Electronic energy + Delta-G solvation = -19480.618048 eV Core-core repulsion = 16652.390877 eV Total energy + Delta-G solvation = -2828.227171 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.22258 -38.63489 -37.78386 -34.83921 -32.96021 -32.20266 -30.55850 -28.51105 -28.49537 -26.96345 -26.30329 -23.86073 -22.11314 -21.90051 -20.52103 -19.58367 -17.69812 -17.08729 -16.49661 -16.30423 -16.09671 -15.48036 -15.12843 -14.93966 -14.72361 -14.22920 -13.87707 -13.71738 -13.55139 -13.46974 -13.35018 -13.19666 -13.08228 -12.82743 -12.68498 -12.37704 -12.31591 -11.87985 -11.67472 -11.54666 -11.06467 -10.92830 -10.74463 -10.53838 -10.33049 -9.21793 -8.65892 -6.28156 0.55568 1.27133 1.47589 1.59214 1.75717 1.94478 2.53918 3.07886 3.13203 3.32121 3.48482 3.67397 3.77470 3.85712 3.87839 4.35591 4.38004 4.48875 4.53478 4.56914 4.62155 4.70303 4.72406 4.74448 4.76063 4.76757 5.01878 5.08914 5.14855 5.16185 5.39581 5.47652 5.51729 5.78242 5.89360 6.10454 6.34973 6.53607 6.74905 7.15633 7.50484 8.69809 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.005987 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.078926 B = 4675.708483 C = 5062.188101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.193 3.807 3 H 0.037 0.963 4 C -0.587 4.587 5 H 0.012 0.988 6 C -0.025 4.025 7 N -0.942 5.942 8 Si 1.084 2.916 9 H -0.293 1.293 10 H -0.231 1.231 11 H -0.267 1.267 12 N -0.681 5.681 13 C 0.134 3.866 14 C 0.282 3.718 15 N -0.565 5.565 16 C 0.184 3.816 17 N -0.335 5.335 18 N -0.362 5.362 19 C 0.164 3.836 20 C -0.171 4.171 21 C -0.133 4.133 22 C -0.161 4.161 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.248 0.752 27 H 0.333 0.667 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.243 0.757 31 H 0.049 0.951 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.138 4.018 20.006 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.084 3.916 3 H 0.054 0.946 4 C -0.625 4.625 5 H 0.031 0.969 6 C -0.222 4.222 7 N -0.579 5.579 8 Si 0.905 3.095 9 H -0.220 1.220 10 H -0.155 1.155 11 H -0.192 1.192 12 N -0.313 5.313 13 C 0.002 3.998 14 C 0.004 3.996 15 N -0.294 5.294 16 C -0.119 4.119 17 N -0.163 5.163 18 N -0.154 5.154 19 C 0.082 3.918 20 C -0.229 4.229 21 C -0.191 4.191 22 C -0.219 4.219 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.152 0.848 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.259 0.741 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.865 4.944 19.257 21.381 hybrid contribution 0.250 -1.863 0.708 2.008 sum -7.615 3.081 19.966 21.590 Atomic orbital electron populations 1.22782 0.98324 1.01227 1.01352 1.19380 0.90915 0.94097 0.87227 0.94559 1.22153 1.38659 1.08787 0.92923 0.96950 1.27235 0.94558 1.08721 0.91688 1.70999 1.45060 1.09073 1.32778 0.83623 0.79131 0.70368 0.76406 1.21971 1.15480 1.19238 1.60435 1.59059 1.09199 1.02638 1.20632 1.00102 0.94248 0.84770 1.24297 0.87385 0.95675 0.92201 1.70479 1.18382 1.22301 1.18193 1.26569 0.97924 0.96334 0.91035 1.77856 0.99655 1.21739 1.17021 1.50966 1.08191 1.40292 1.15974 1.21254 0.72482 0.99228 0.98821 1.22538 1.03574 1.01028 0.95739 1.21874 1.03317 0.98787 0.95111 1.22383 1.04393 0.92247 1.02848 0.91722 0.92457 0.93964 0.94270 0.84845 0.88633 0.90463 0.74069 0.93198 0.86666 0.91840 0.91898 0.87726 0.92979 0.91657 0.86826 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.55 8.39 71.98 0.60 -5.95 16 2 C 0.19 8.47 2.16 44.17 0.10 8.57 16 3 H 0.04 1.57 6.41 -2.39 -0.02 1.56 16 4 C -0.59 -33.28 9.10 25.60 0.23 -33.05 16 5 H 0.01 0.79 8.06 -2.91 -0.02 0.77 16 6 C -0.02 -1.43 5.34 84.65 0.45 -0.98 16 7 N -0.94 -59.40 13.70 21.45 0.29 -59.11 16 8 Si 1.08 47.92 26.44 68.60 1.81 49.73 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 10 H -0.23 -8.52 5.53 99.48 0.55 -7.97 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 12 N -0.68 -27.25 6.07 -499.46 -3.03 -30.28 16 13 C 0.13 4.29 4.87 85.56 0.42 4.71 16 14 C 0.28 9.24 7.06 138.22 0.98 10.21 16 15 N -0.57 -20.27 11.19 -191.77 -2.15 -22.42 16 16 C 0.18 5.47 13.03 180.76 2.36 7.82 16 17 N -0.33 -9.95 11.82 -61.25 -0.72 -10.67 16 18 N -0.36 -10.16 3.47 -298.49 -1.03 -11.20 16 19 C 0.16 3.31 1.06 3.61 0.00 3.32 16 20 C -0.17 -3.42 7.57 71.98 0.55 -2.88 16 21 C -0.13 -2.24 8.04 71.98 0.58 -1.66 16 22 C -0.16 -2.49 8.52 71.98 0.61 -1.87 16 23 H 0.06 1.81 6.66 -2.39 -0.02 1.79 16 24 H 0.06 2.17 4.85 -2.39 -0.01 2.16 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.25 16.09 8.73 -92.71 -0.81 15.28 16 27 H 0.33 12.85 6.71 -89.70 -0.60 12.25 16 28 H 0.10 3.17 8.01 -2.39 -0.02 3.15 16 29 H 0.08 1.99 3.40 -2.38 -0.01 1.98 16 30 H 0.24 5.10 8.06 -2.91 -0.02 5.07 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.06 1.44 3.28 -2.39 -0.01 1.43 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.09 5.68 -2.39 -0.01 1.07 16 38 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.97 302.53 2.30 -70.66 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.26 Total: 25.04 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 6.87 Total: -11.76 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -6.64 Total: -133.68 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.81 Total: 49.73 kcal Total: -72.97 2.30 -70.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309514196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.175 kcal (2) G-P(sol) polarization free energy of solvation -72.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds