Wall clock time and date at job start Sun Mar 29 2020 23:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47356 * 2 1 4 4 C 1.36947 * 119.99615 * 273.45938 * 3 2 1 5 5 H 1.07997 * 119.99954 * 35.78018 * 4 3 2 6 6 C 1.38813 * 119.99726 * 215.78333 * 4 3 2 7 7 N 1.31625 * 119.99975 * 19.01157 * 6 4 3 8 8 Si 1.86797 * 120.00039 * 199.00977 * 6 4 3 9 9 H 1.48503 * 109.46821 * 60.00250 * 8 6 4 10 10 H 1.48504 * 109.46986 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47294 * 300.00201 * 8 6 4 12 12 C 1.46497 * 120.00545 * 93.45280 * 3 2 1 13 13 C 1.50700 * 109.47150 * 275.16075 * 12 3 2 14 14 N 1.30833 * 125.95928 * 299.77333 * 13 12 3 15 15 C 1.33246 * 109.82230 * 180.02562 * 14 13 12 16 16 N 1.30708 * 108.95426 * 0.02562 * 15 14 13 17 17 N 1.34428 * 125.96196 * 119.79867 * 13 12 3 18 18 C 1.46502 * 126.82106 * 359.97438 * 17 13 12 19 19 C 1.52995 * 109.47226 * 61.34658 * 18 17 13 20 20 C 1.53003 * 109.47002 * 181.34227 * 18 17 13 21 21 C 1.53002 * 109.47287 * 301.34247 * 18 17 13 22 22 H 1.08997 * 109.47479 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47292 * 300.00069 * 1 2 3 24 24 H 1.09002 * 109.47440 * 60.00286 * 1 2 3 25 25 H 1.09001 * 109.47180 * 239.99386 * 2 1 3 26 26 H 1.09002 * 109.47440 * 119.99714 * 2 1 3 27 27 H 0.97002 * 120.00015 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47390 * 155.15750 * 12 3 2 29 29 H 1.09002 * 109.46880 * 35.15747 * 12 3 2 30 30 H 1.08010 * 125.51745 * 179.73782 * 15 14 13 31 31 H 1.08999 * 109.47630 * 65.10059 * 19 18 17 32 32 H 1.08998 * 109.47186 * 185.10771 * 19 18 17 33 33 H 1.09003 * 109.47121 * 305.10231 * 19 18 17 34 34 H 1.09007 * 109.47068 * 60.00375 * 20 18 17 35 35 H 1.08997 * 109.46943 * 180.02562 * 20 18 17 36 36 H 1.08997 * 109.47182 * 299.99998 * 20 18 17 37 37 H 1.09004 * 109.47103 * 67.63350 * 21 18 17 38 38 H 1.08997 * 109.46972 * 187.63342 * 21 18 17 39 39 H 1.09002 * 109.47065 * 307.63159 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1791 2.0505 -1.1839 5 1 1.4873 1.8845 -1.9963 6 6 3.2314 2.9423 -1.3396 7 7 4.2705 2.8812 -0.5339 8 14 3.1729 4.2290 -2.6925 9 1 1.9887 5.1027 -2.4936 10 1 4.4081 5.0522 -2.6464 11 1 3.0752 3.5555 -4.0123 12 6 2.3346 2.0464 1.2663 13 6 1.0781 2.6397 1.8496 14 7 0.3226 3.5463 1.2847 15 6 -0.7041 3.8394 2.0818 16 7 -0.6155 3.1207 3.1700 17 7 0.5383 2.3303 3.0412 18 6 1.0518 1.3614 4.0127 19 6 2.4446 1.7929 4.4760 20 6 0.1103 1.2990 5.2172 21 6 1.1366 -0.0197 3.3597 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 5.0061 3.5042 -0.6429 28 1 3.0621 2.8385 1.0889 29 1 2.7513 1.3200 1.9641 30 1 -1.4809 4.5582 1.8659 31 1 2.3709 2.7340 5.0210 32 1 2.8640 1.0270 5.1283 33 1 3.0913 1.9251 3.6085 34 1 -0.8820 0.9916 4.8871 35 1 0.4926 0.5785 5.9402 36 1 0.0499 2.2829 5.6824 37 1 1.9069 -0.0103 2.5885 38 1 1.3879 -0.7640 4.1152 39 1 0.1753 -0.2686 2.9100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330416852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:42 Heat of formation + Delta-G solvation = 108.304228 kcal Electronic energy + Delta-G solvation = -20229.129702 eV Core-core repulsion = 17402.671478 eV Total energy + Delta-G solvation = -2826.458224 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.35925 -36.95101 -35.94849 -31.91934 -31.10799 -30.45542 -28.82935 -27.40441 -27.26854 -26.02472 -23.70273 -22.24066 -20.89771 -19.90553 -18.91720 -16.82965 -16.05034 -15.14026 -14.93160 -14.74441 -14.13714 -13.81098 -13.65771 -13.34974 -12.85076 -12.60063 -12.33533 -12.24527 -12.17791 -11.99465 -11.69779 -11.45274 -11.20926 -11.15093 -11.04326 -10.90317 -10.67991 -10.42367 -10.20843 -10.05393 -9.65558 -8.96802 -8.93539 -8.65991 -8.39932 -6.70942 -5.84623 -3.38161 2.44179 2.92415 3.43776 3.48421 3.56611 3.87490 4.52026 4.66086 4.89231 4.99384 5.12001 5.30807 5.38309 5.50610 5.57933 5.59243 5.73447 5.76767 5.84584 5.88427 5.95749 6.00790 6.09123 6.26320 6.30033 6.36519 6.42243 6.52542 6.58585 6.82405 7.07385 7.16222 7.29007 7.35898 7.71758 7.82691 8.45878 9.05582 9.14322 9.75204 10.27641 11.19922 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.008209 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.497661 B = 3410.243398 C = 3587.559938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 N -0.563 5.563 4 C -0.242 4.242 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.896 5.896 8 Si 0.904 3.096 9 H -0.278 1.278 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.205 3.795 13 C 0.288 3.712 14 N -0.529 5.529 15 C 0.180 3.820 16 N -0.352 5.352 17 N -0.383 5.383 18 C 0.182 3.818 19 C -0.166 4.166 20 C -0.136 4.136 21 C -0.171 4.171 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.038 0.962 27 H 0.257 0.743 28 H 0.131 0.869 29 H 0.053 0.947 30 H 0.201 0.799 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -4.792 9.667 11.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 N -0.281 5.281 4 C -0.372 4.372 5 H 0.079 0.921 6 C -0.183 4.183 7 N -0.539 5.539 8 Si 0.734 3.266 9 H -0.204 1.204 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.074 3.926 13 C 0.011 3.989 14 N -0.256 5.256 15 C -0.123 4.123 16 N -0.180 5.180 17 N -0.176 5.176 18 C 0.097 3.903 19 C -0.224 4.224 20 C -0.194 4.194 21 C -0.229 4.229 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.147 0.853 29 H 0.071 0.929 30 H 0.218 0.782 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.351 -4.589 9.955 11.794 hybrid contribution -0.253 0.777 -0.603 1.016 sum -4.605 -3.812 9.352 11.099 Atomic orbital electron populations 1.22324 0.99962 0.98827 1.01371 1.20994 0.91741 0.86779 0.99243 1.43610 1.75285 1.07784 1.01460 1.18921 1.06322 1.20526 0.91428 0.92144 1.25072 0.94194 1.00806 0.98277 1.69839 1.06379 1.37483 1.40223 0.86344 0.77099 0.81853 0.81348 1.20434 1.21717 1.20874 1.20062 0.87921 0.98293 0.86277 1.26963 0.98505 0.91349 0.82129 1.70638 1.06088 1.17623 1.31293 1.25820 0.98226 0.99254 0.88974 1.77737 1.04626 1.11275 1.24372 1.50771 1.19104 1.31954 1.15724 1.20584 0.94231 0.87235 0.88230 1.22386 0.95032 1.02150 1.02878 1.21850 0.99167 1.02624 0.95765 1.22559 1.03987 0.94346 1.02000 0.94499 0.94246 0.92990 0.92906 0.94418 0.93299 0.85250 0.92893 0.78237 0.91991 0.90570 0.90444 0.91796 0.91506 0.91712 0.89969 0.90840 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.22 37.16 0.38 -2.76 16 2 C 0.14 2.81 6.31 -4.04 -0.03 2.78 16 3 N -0.56 -13.48 2.43 -174.61 -0.42 -13.91 16 4 C -0.24 -6.52 9.50 -15.05 -0.14 -6.66 16 5 H 0.06 1.66 7.90 -52.49 -0.41 1.24 16 6 C 0.02 0.43 4.99 -17.43 -0.09 0.34 16 7 N -0.90 -24.75 11.26 55.49 0.62 -24.13 16 8 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 9 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.20 4.64 4.60 -5.20 -0.02 4.62 16 13 C 0.29 6.28 6.38 -155.69 -0.99 5.29 16 14 N -0.53 -12.36 11.19 -11.97 -0.13 -12.49 16 15 C 0.18 3.59 13.03 -91.81 -1.20 2.40 16 16 N -0.35 -6.84 11.82 29.29 0.35 -6.49 16 17 N -0.38 -7.20 3.47 -45.70 -0.16 -7.36 16 18 C 0.18 2.68 1.06 -131.82 -0.14 2.54 16 19 C -0.17 -2.22 8.48 37.16 0.31 -1.91 16 20 C -0.14 -1.72 8.03 37.16 0.30 -1.42 16 21 C -0.17 -2.34 8.23 37.16 0.31 -2.03 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.79 6.81 -51.93 -0.35 0.44 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 1.08 8.07 -51.93 -0.42 0.67 16 26 H 0.04 0.69 5.70 -51.93 -0.30 0.39 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.13 3.39 5.35 -51.93 -0.28 3.12 16 29 H 0.05 1.07 3.68 -51.93 -0.19 0.88 16 30 H 0.20 3.18 8.06 -52.48 -0.42 2.76 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.18 5.53 -51.93 -0.29 0.89 16 34 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.25 3.22 -51.93 -0.17 1.09 16 38 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.06 0.95 7.51 -51.93 -0.39 0.56 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -30.31 307.17 -7.19 -37.51 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.74 Total: 2.12 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.31 Total: 3.17 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: 0.25 Total: -64.38 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.31 -7.19 -37.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330416852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.812 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds