Wall clock time and date at job start Sun Mar 29 2020 23:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99960 * 2 1 4 4 C 1.50706 * 109.46706 * 270.00337 * 3 2 1 5 5 H 1.07993 * 120.00258 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99427 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99925 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00426 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.47017 * 89.99867 * 8 6 4 10 10 H 1.48499 * 109.47409 * 209.99746 * 8 6 4 11 11 H 1.48502 * 109.46872 * 330.00113 * 8 6 4 12 12 C 1.34776 * 120.00145 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00043 * 184.90482 * 12 2 1 14 14 C 1.50701 * 119.99746 * 4.89959 * 12 2 1 15 15 C 1.54134 * 110.74605 * 300.07123 * 14 12 2 16 16 C 1.55162 * 102.88917 * 262.58764 * 15 14 12 17 17 C 1.54836 * 101.65404 * 323.84005 * 16 15 14 18 18 N 1.47858 * 110.77414 * 181.18949 * 14 12 2 19 19 C 1.47953 * 108.37197 * 238.95983 * 18 14 12 20 20 C 1.54840 * 105.06497 * 22.81315 * 19 18 14 21 21 C 1.54134 * 111.33584 * 61.92338 * 14 12 2 22 22 H 1.09005 * 109.46943 * 275.04423 * 1 2 3 23 23 H 1.08997 * 109.47524 * 35.04424 * 1 2 3 24 24 H 1.09001 * 109.47076 * 155.04868 * 1 2 3 25 25 H 1.08995 * 109.47085 * 29.99785 * 3 2 1 26 26 H 1.08999 * 109.46955 * 150.00810 * 3 2 1 27 27 H 0.96998 * 120.00160 * 179.97438 * 7 6 4 28 28 H 1.08995 * 110.73719 * 144.23683 * 15 14 12 29 29 H 1.09004 * 110.73388 * 20.92934 * 15 14 12 30 30 H 1.09002 * 110.99604 * 81.92675 * 16 15 14 31 31 H 1.08998 * 110.99432 * 205.74815 * 16 15 14 32 32 H 1.09001 * 110.32549 * 155.57888 * 17 16 15 33 33 H 1.09004 * 110.32430 * 277.67578 * 17 16 15 34 34 H 1.09005 * 110.32174 * 141.70892 * 19 18 14 35 35 H 1.08994 * 110.32126 * 263.91291 * 19 18 14 36 36 H 1.09005 * 110.98714 * 205.23709 * 20 19 18 37 37 H 1.08997 * 110.99138 * 81.42277 * 20 19 18 38 38 H 1.08997 * 110.73040 * 216.11987 * 21 14 12 39 39 H 1.09001 * 110.72418 * 339.41229 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2417 6 6 3.1258 2.8780 -1.6728 7 7 3.3454 3.2574 -2.9128 8 14 3.7316 3.9300 -0.2530 9 1 5.1050 3.5093 0.1239 10 1 3.7465 5.3566 -0.6651 11 1 2.8250 3.7603 0.9108 12 6 2.1389 -1.1672 -0.0005 13 8 3.3484 -1.1691 0.0893 14 6 1.3895 -2.4698 -0.1126 15 6 0.4014 -2.6338 1.0590 16 6 1.1896 -3.5258 2.0543 17 6 1.9575 -4.4649 1.0921 18 7 2.3214 -3.6168 -0.0643 19 6 2.1677 -4.3954 -1.3129 20 6 1.5734 -3.3988 -2.3381 21 6 0.6202 -2.5614 -1.4451 22 1 -0.3633 0.0904 1.0237 23 1 -0.3634 0.8413 -0.5901 24 1 -0.3633 -0.9318 -0.4335 25 1 1.6084 2.0284 0.5138 26 1 3.1500 1.1384 0.5137 27 1 3.8216 4.0837 -3.0900 28 1 -0.5086 -3.1349 0.7291 29 1 0.1702 -1.6673 1.5069 30 1 1.8797 -2.9294 2.6511 31 1 0.5114 -4.0913 2.6933 32 1 2.8548 -4.8509 1.5758 33 1 1.3165 -5.2870 0.7737 34 1 3.1372 -4.7575 -1.6551 35 1 1.4846 -5.2303 -1.1567 36 1 1.0189 -3.9233 -3.1163 37 1 2.3534 -2.7726 -2.7712 38 1 -0.3307 -3.0760 -1.3070 39 1 0.4653 -1.5697 -1.8699 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335191148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:30 Heat of formation + Delta-G solvation = -9.977844 kcal Electronic energy + Delta-G solvation = -20011.364815 eV Core-core repulsion = 17147.484744 eV Total energy + Delta-G solvation = -2863.880070 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76500 -37.81427 -34.87747 -33.90347 -32.67090 -31.32065 -28.58560 -27.76730 -25.95183 -25.46861 -22.92166 -21.78566 -20.69852 -20.34200 -18.18930 -16.90305 -16.30591 -15.97283 -15.48605 -14.83307 -14.74254 -14.11532 -13.78862 -13.55598 -13.14167 -12.87580 -12.62245 -12.38027 -12.31635 -12.10249 -11.73575 -11.55465 -11.47729 -11.12413 -10.98897 -10.93816 -10.74921 -10.70376 -10.46551 -10.29362 -10.09333 -9.49741 -8.91076 -8.55434 -8.14731 -7.59288 -6.05693 -4.03964 3.32008 3.37917 3.40337 3.43196 3.66920 4.24405 4.42992 4.54548 4.61647 4.80334 4.98898 5.04061 5.12048 5.17874 5.28955 5.37699 5.47348 5.60028 5.63834 5.69928 5.79231 5.83139 5.85831 5.89437 5.99172 6.00995 6.13372 6.18183 6.24426 6.34860 6.72197 6.93704 7.06510 7.10990 7.44933 7.65568 8.36744 8.51578 8.97021 9.15831 9.55422 11.07729 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030408 B = 0.006793 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.597872 B = 4121.066070 C = 4359.203660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.602 5.602 3 C 0.217 3.783 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.529 3.471 13 O -0.516 6.516 14 C 0.074 3.926 15 C -0.138 4.138 16 C -0.132 4.132 17 C 0.037 3.963 18 N -0.485 5.485 19 C 0.037 3.963 20 C -0.132 4.132 21 C -0.134 4.134 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.028 0.972 26 H 0.037 0.963 27 H 0.264 0.736 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -14.340 6.952 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.096 3.904 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.314 3.686 13 O -0.390 6.390 14 C -0.019 4.019 15 C -0.177 4.177 16 C -0.170 4.170 17 C -0.091 4.091 18 N -0.209 5.209 19 C -0.090 4.090 20 C -0.170 4.170 21 C -0.173 4.173 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.297 -14.003 6.950 17.698 hybrid contribution -0.532 0.415 0.429 0.799 sum -8.828 -13.588 7.379 17.805 Atomic orbital electron populations 1.21968 0.81609 1.03064 1.00475 1.47748 1.05936 1.06879 1.72963 1.19626 0.92500 0.80004 0.98244 1.21348 1.36852 1.07065 0.91335 0.90808 1.24854 0.95247 0.97371 0.95557 1.69900 1.41621 1.23562 1.18636 0.86850 0.80184 0.79681 0.82982 1.19893 1.21107 1.19072 1.19776 0.87732 0.83827 0.77290 1.90639 1.13854 1.86581 1.47961 1.22256 0.90954 0.92543 0.96147 1.23148 0.97393 1.01602 0.95542 1.22771 0.98834 0.97791 0.97614 1.23280 0.99019 0.94862 0.91978 1.65041 1.48162 1.05354 1.02293 1.23278 1.00586 0.95151 0.90020 1.22778 0.99132 0.97693 0.97420 1.23028 0.97780 1.02217 0.94241 0.93748 0.90941 0.91240 0.95360 0.94535 0.92613 0.90527 0.89572 0.90541 0.90762 0.90172 0.93373 0.90069 0.93439 0.90708 0.90024 0.90644 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 8.32 59.85 0.50 1.64 16 2 N -0.60 -12.78 2.80 -182.95 -0.51 -13.29 16 3 C 0.22 5.46 4.29 -5.19 -0.02 5.44 16 4 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16 5 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 8 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 9 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 12 C 0.53 11.44 6.50 -10.99 -0.07 11.37 16 13 O -0.52 -13.66 16.06 5.56 0.09 -13.57 16 14 C 0.07 1.20 0.62 -131.04 -0.08 1.12 16 15 C -0.14 -1.73 4.86 -24.99 -0.12 -1.85 16 16 C -0.13 -1.56 7.07 -24.62 -0.17 -1.73 16 17 C 0.04 0.46 6.72 -2.28 -0.02 0.44 16 18 N -0.49 -7.77 4.97 -214.08 -1.06 -8.84 16 19 C 0.04 0.50 6.72 -2.27 -0.02 0.49 16 20 C -0.13 -1.84 7.07 -24.62 -0.17 -2.01 16 21 C -0.13 -1.89 4.59 -25.00 -0.11 -2.00 16 22 H 0.04 0.59 7.27 -51.93 -0.38 0.21 16 23 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 24 H 0.07 0.92 3.82 -51.93 -0.20 0.72 16 25 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 26 H 0.04 0.99 6.79 -51.93 -0.35 0.64 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.08 0.77 7.30 -51.93 -0.38 0.39 16 29 H 0.09 1.10 5.39 -51.93 -0.28 0.82 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.50 7.08 -51.93 -0.37 0.14 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.52 7.08 -51.93 -0.37 0.15 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.08 0.83 7.30 -51.93 -0.38 0.45 16 39 H 0.09 1.42 6.36 -51.93 -0.33 1.09 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -35.03 297.05 -7.59 -42.62 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.95 Total: -0.66 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.73 Total: -0.81 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.80 Total: -49.36 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.03 -7.59 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335191148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.638 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds