Wall clock time and date at job start Sun Mar 29 2020 23:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 110.99923 * 2 1 4 4 C 1.53017 * 109.34282 * 173.76273 * 3 2 1 5 5 C 1.52837 * 109.54892 * 59.06978 * 4 3 2 6 6 H 1.08994 * 109.48669 * 182.98786 * 5 4 3 7 7 C 1.53169 * 109.73139 * 303.17838 * 5 4 3 8 8 H 1.09001 * 109.64313 * 295.37748 * 7 5 4 9 9 C 1.53228 * 108.96069 * 175.30911 * 7 5 4 10 10 C 1.53049 * 109.42520 * 298.29213 * 9 7 5 11 11 C 1.53173 * 109.41744 * 61.43536 * 10 9 7 12 12 N 1.46792 * 109.72700 * 62.79322 * 5 4 3 13 13 C 1.34770 * 120.68928 * 6.00468 * 12 5 4 14 14 O 1.21684 * 119.99854 * 2.46971 * 13 12 5 15 15 C 1.46371 * 120.00063 * 182.46400 * 13 12 5 16 16 H 1.08004 * 120.00453 * 351.05134 * 15 13 12 17 17 C 1.40051 * 120.00217 * 171.04836 * 15 13 12 18 18 N 1.30675 * 119.99771 * 358.89135 * 17 15 13 19 19 Si 1.86796 * 120.00165 * 178.89125 * 17 15 13 20 20 H 1.48498 * 109.47586 * 85.02803 * 19 17 15 21 21 H 1.48502 * 109.47010 * 205.03151 * 19 17 15 22 22 H 1.48501 * 109.47207 * 325.02360 * 19 17 15 23 23 C 1.46772 * 111.07089 * 235.84518 * 2 1 3 24 24 H 1.08998 * 109.46907 * 56.04776 * 1 2 3 25 25 H 1.09005 * 109.47229 * 176.05038 * 1 2 3 26 26 H 1.09002 * 109.47255 * 296.04691 * 1 2 3 27 27 H 1.09005 * 109.49485 * 53.79417 * 3 2 1 28 28 H 1.08994 * 109.49512 * 293.73108 * 3 2 1 29 29 H 1.08997 * 109.45613 * 179.09061 * 4 3 2 30 30 H 1.09000 * 109.46129 * 299.05754 * 4 3 2 31 31 H 1.09001 * 109.48481 * 178.29207 * 9 7 5 32 32 H 1.08994 * 109.45220 * 58.27555 * 9 7 5 33 33 H 1.09005 * 109.47825 * 301.45621 * 10 9 7 34 34 H 1.08993 * 109.48071 * 181.41960 * 10 9 7 35 35 H 1.09002 * 109.57424 * 185.82139 * 11 10 9 36 36 H 1.08995 * 109.68189 * 65.50064 * 11 10 9 37 37 H 0.97002 * 119.99683 * 180.02562 * 18 17 15 38 38 H 1.08994 * 109.29492 * 65.94916 * 23 2 1 39 39 H 1.09003 * 109.47421 * 306.16311 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5169 1.3302 0.1569 5 6 4.1280 0.5289 -0.9922 6 1 5.2063 0.4552 -0.8510 7 6 3.5195 -0.8764 -1.0236 8 1 3.7935 -1.4147 -0.1163 9 6 4.0555 -1.6237 -2.2492 10 6 3.6305 -0.8863 -3.5212 11 6 4.2290 0.5237 -3.5165 12 7 3.8457 1.1979 -2.2679 13 6 3.2471 2.4051 -2.2939 14 8 2.9755 2.9720 -1.2519 15 6 2.9238 3.0344 -3.5753 16 1 3.2909 2.6049 -4.4957 17 6 2.1384 4.1935 -3.6079 18 7 1.6762 4.7009 -2.4959 19 14 1.7517 5.0141 -5.2407 20 1 0.5646 4.3646 -5.8523 21 1 1.4673 6.4542 -5.0159 22 1 2.9160 4.8760 -6.1522 23 6 1.9967 -0.7689 -1.1334 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3634 -1.0253 -0.0708 26 1 -0.3634 0.4513 0.9233 27 1 1.5591 1.9285 0.8291 28 1 1.7397 1.8592 -0.9406 29 1 3.9112 2.3463 0.1409 30 1 3.7716 0.8568 1.1051 31 1 3.6513 -2.6359 -2.2634 32 1 5.1435 -1.6674 -2.2006 33 1 2.5430 -0.8194 -3.5564 34 1 3.9898 -1.4308 -4.3943 35 1 3.8454 1.0861 -4.3678 36 1 5.3153 0.4615 -3.5795 37 1 1.1319 5.5035 -2.5185 38 1 1.7349 -0.2648 -2.0636 39 1 1.5614 -1.7683 -1.1286 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335280322.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:51 Heat of formation + Delta-G solvation = 5.365741 kcal Electronic energy + Delta-G solvation = -20758.594779 eV Core-core repulsion = 17895.380057 eV Total energy + Delta-G solvation = -2863.214723 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08983 -36.48256 -35.74705 -32.89362 -31.83033 -31.62495 -28.95195 -26.61655 -25.92723 -24.38480 -22.71037 -22.04208 -20.40540 -19.95942 -17.52090 -16.35440 -15.74778 -15.18071 -14.78190 -14.67163 -14.32392 -14.26122 -13.46452 -13.11963 -12.84258 -12.75022 -12.45954 -12.25711 -11.68692 -11.47446 -11.42746 -11.20506 -11.06349 -10.96906 -10.69320 -10.50704 -10.32090 -10.26766 -10.01085 -9.73035 -9.64466 -9.36454 -8.86630 -7.48936 -7.14334 -6.93704 -6.18487 -4.66161 3.09449 3.17407 3.19464 4.04616 4.44845 4.54575 4.72985 5.24269 5.25326 5.36810 5.55386 5.70754 5.75569 5.80013 5.97317 6.01784 6.06067 6.09133 6.13869 6.17881 6.26915 6.31218 6.40282 6.42803 6.56362 6.62145 6.65158 6.69212 6.81788 7.04161 7.32331 7.39486 7.47272 7.62492 7.84392 7.97087 8.16915 8.35726 8.98679 9.41839 10.51852 10.70075 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.009476 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.699923 B = 2954.186200 C = 3468.881012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.559 5.559 3 C 0.051 3.949 4 C -0.096 4.096 5 C 0.158 3.842 6 H 0.044 0.956 7 C -0.094 4.094 8 H 0.073 0.927 9 C -0.109 4.109 10 C -0.138 4.138 11 C 0.121 3.879 12 N -0.634 5.634 13 C 0.556 3.444 14 O -0.555 6.555 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.090 3.910 18 N -0.769 5.769 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.265 1.265 23 C 0.069 3.931 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.030 0.970 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.042 0.958 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -9.401 -0.684 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.284 5.284 3 C -0.074 4.074 4 C -0.133 4.133 5 C 0.053 3.947 6 H 0.062 0.938 7 C -0.114 4.114 8 H 0.091 0.909 9 C -0.148 4.148 10 C -0.177 4.177 11 C -0.003 4.003 12 N -0.372 5.372 13 C 0.363 3.637 14 O -0.439 6.439 15 C -0.582 4.582 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.397 5.397 19 Si 0.728 3.272 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.190 1.190 23 C -0.059 4.059 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.337 -9.131 0.419 9.238 hybrid contribution -0.477 0.564 -1.588 1.751 sum 0.860 -8.567 -1.169 8.689 Atomic orbital electron populations 1.22193 0.88868 1.00178 1.00423 1.62023 1.06382 1.17289 1.42715 1.23041 0.94562 0.85503 1.04340 1.21858 0.95831 1.01571 0.94089 1.20810 0.96616 0.91045 0.86192 0.93798 1.21558 0.95314 0.97015 0.97549 0.90891 1.21522 1.00159 0.98073 0.95004 1.22007 1.01683 0.97020 0.96946 1.21414 0.97320 0.92037 0.89563 1.48057 1.65268 1.20465 1.03377 1.18003 0.76652 0.78518 0.90556 1.90535 1.56125 1.63655 1.33630 1.21013 1.34384 1.10583 0.92246 0.91145 1.25663 0.94156 0.96176 0.96949 1.69965 1.25046 1.17721 1.27010 0.86462 0.79358 0.78595 0.82827 1.19799 1.20498 1.18968 1.21970 0.94368 0.96735 0.92853 0.96000 0.92791 0.92195 0.93264 0.88155 0.87829 0.95139 0.92717 0.92300 0.91514 0.92228 0.89070 0.94193 0.92089 0.94004 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.62 60.06 0.58 1.14 16 2 N -0.56 -10.92 4.91 -242.98 -1.19 -12.12 16 3 C 0.05 1.15 4.33 -3.82 -0.02 1.13 16 4 C -0.10 -2.07 5.02 -26.81 -0.13 -2.21 16 5 C 0.16 3.14 3.05 -67.77 -0.21 2.93 16 6 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 7 C -0.09 -1.61 2.76 -90.38 -0.25 -1.86 16 8 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 9 C -0.11 -1.58 5.43 -26.59 -0.14 -1.73 16 10 C -0.14 -2.12 5.71 -26.62 -0.15 -2.27 16 11 C 0.12 2.22 6.35 -3.69 -0.02 2.19 16 12 N -0.63 -13.83 2.35 -167.05 -0.39 -14.22 16 13 C 0.56 14.66 6.28 -12.99 -0.08 14.58 16 14 O -0.55 -15.84 8.50 5.20 0.04 -15.80 16 15 C -0.55 -14.56 8.82 -35.63 -0.31 -14.88 16 16 H 0.07 1.75 5.73 -52.48 -0.30 1.45 16 17 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16 18 N -0.77 -21.77 11.87 55.55 0.66 -21.11 16 19 Si 0.90 19.58 29.56 -169.99 -5.02 14.55 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 C 0.07 1.25 4.24 -3.86 -0.02 1.24 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.81 8.02 -51.93 -0.42 0.39 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 1.13 8.12 -51.93 -0.42 0.71 16 28 H 0.10 2.71 4.56 -53.93 -0.25 2.46 16 29 H 0.10 2.54 6.01 -51.72 -0.31 2.23 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.12 6.20 -51.93 -0.32 0.79 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.76 5.34 -51.93 -0.28 1.48 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 38 H 0.04 0.87 5.76 -51.93 -0.30 0.57 16 39 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 LS Contribution 284.96 15.07 4.29 4.29 Total: -1.00 -29.23 284.96 -8.42 -37.65 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.95 Total: 4.17 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.86 Total: 2.58 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.93 Total: -47.45 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.04 Total: -15.80 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.23 -8.42 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335280322.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.019 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds