Wall clock time and date at job start Sun Mar 29 2020 23:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 110.99923 * 2 1 4 4 C 1.53017 * 109.34282 * 173.76273 * 3 2 1 5 5 C 1.52837 * 109.54892 * 59.06978 * 4 3 2 6 6 H 1.08994 * 109.48669 * 182.98786 * 5 4 3 7 7 C 1.53169 * 109.73139 * 303.17838 * 5 4 3 8 8 H 1.09001 * 109.64313 * 295.37748 * 7 5 4 9 9 C 1.53228 * 108.96069 * 175.30911 * 7 5 4 10 10 C 1.53049 * 109.42520 * 298.29213 * 9 7 5 11 11 C 1.53173 * 109.41744 * 61.43536 * 10 9 7 12 12 N 1.46792 * 109.72700 * 62.79322 * 5 4 3 13 13 C 1.34770 * 120.68928 * 6.00468 * 12 5 4 14 14 O 1.21684 * 119.99854 * 2.46971 * 13 12 5 15 15 C 1.46371 * 120.00063 * 182.46400 * 13 12 5 16 16 H 1.08004 * 120.00453 * 351.05134 * 15 13 12 17 17 C 1.40051 * 120.00217 * 171.04836 * 15 13 12 18 18 N 1.30675 * 119.99771 * 358.89135 * 17 15 13 19 19 Si 1.86796 * 120.00165 * 178.89125 * 17 15 13 20 20 H 1.48498 * 109.47586 * 85.02803 * 19 17 15 21 21 H 1.48502 * 109.47010 * 205.03151 * 19 17 15 22 22 H 1.48501 * 109.47207 * 325.02360 * 19 17 15 23 23 C 1.46772 * 111.07089 * 235.84518 * 2 1 3 24 24 H 1.08998 * 109.46907 * 56.04776 * 1 2 3 25 25 H 1.09005 * 109.47229 * 176.05038 * 1 2 3 26 26 H 1.09002 * 109.47255 * 296.04691 * 1 2 3 27 27 H 1.09005 * 109.49485 * 53.79417 * 3 2 1 28 28 H 1.08994 * 109.49512 * 293.73108 * 3 2 1 29 29 H 1.08997 * 109.45613 * 179.09061 * 4 3 2 30 30 H 1.09000 * 109.46129 * 299.05754 * 4 3 2 31 31 H 1.09001 * 109.48481 * 178.29207 * 9 7 5 32 32 H 1.08994 * 109.45220 * 58.27555 * 9 7 5 33 33 H 1.09005 * 109.47825 * 301.45621 * 10 9 7 34 34 H 1.08993 * 109.48071 * 181.41960 * 10 9 7 35 35 H 1.09002 * 109.57424 * 185.82139 * 11 10 9 36 36 H 1.08995 * 109.68189 * 65.50064 * 11 10 9 37 37 H 0.97002 * 119.99683 * 180.02562 * 18 17 15 38 38 H 1.08994 * 109.29492 * 65.94916 * 23 2 1 39 39 H 1.09003 * 109.47421 * 306.16311 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5169 1.3302 0.1569 5 6 4.1280 0.5289 -0.9922 6 1 5.2063 0.4552 -0.8510 7 6 3.5195 -0.8764 -1.0236 8 1 3.7935 -1.4147 -0.1163 9 6 4.0555 -1.6237 -2.2492 10 6 3.6305 -0.8863 -3.5212 11 6 4.2290 0.5237 -3.5165 12 7 3.8457 1.1979 -2.2679 13 6 3.2471 2.4051 -2.2939 14 8 2.9755 2.9720 -1.2519 15 6 2.9238 3.0344 -3.5753 16 1 3.2909 2.6049 -4.4957 17 6 2.1384 4.1935 -3.6079 18 7 1.6762 4.7009 -2.4959 19 14 1.7517 5.0141 -5.2407 20 1 0.5646 4.3646 -5.8523 21 1 1.4673 6.4542 -5.0159 22 1 2.9160 4.8760 -6.1522 23 6 1.9967 -0.7689 -1.1334 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3634 -1.0253 -0.0708 26 1 -0.3634 0.4513 0.9233 27 1 1.5591 1.9285 0.8291 28 1 1.7397 1.8592 -0.9406 29 1 3.9112 2.3463 0.1409 30 1 3.7716 0.8568 1.1051 31 1 3.6513 -2.6359 -2.2634 32 1 5.1435 -1.6674 -2.2006 33 1 2.5430 -0.8194 -3.5564 34 1 3.9898 -1.4308 -4.3943 35 1 3.8454 1.0861 -4.3678 36 1 5.3153 0.4615 -3.5795 37 1 1.1319 5.5035 -2.5185 38 1 1.7349 -0.2648 -2.0636 39 1 1.5614 -1.7683 -1.1286 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335280322.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:51 Heat of formation + Delta-G solvation = -14.392023 kcal Electronic energy + Delta-G solvation = -20759.451540 eV Core-core repulsion = 17895.380057 eV Total energy + Delta-G solvation = -2864.071484 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.72068 -38.27949 -37.29010 -34.82635 -33.43978 -33.29662 -30.51748 -28.45053 -27.52600 -25.95474 -24.26172 -23.58223 -22.13577 -21.53533 -19.19667 -18.11882 -17.65402 -16.76950 -16.44791 -16.30286 -15.88741 -15.87389 -14.98437 -14.67251 -14.55327 -14.30011 -14.00779 -13.72477 -13.19275 -13.15020 -13.08190 -12.94186 -12.76864 -12.56063 -12.31848 -12.07418 -12.02245 -11.74184 -11.57476 -11.29366 -11.14049 -10.97465 -10.81351 -9.20670 -9.06172 -8.70098 -8.17171 -6.73739 1.37157 1.38436 1.51408 2.23007 2.50577 2.89350 3.16780 3.66836 3.86098 3.91700 4.01719 4.26793 4.35934 4.38467 4.43414 4.56155 4.58041 4.69827 4.72747 4.77595 4.79683 4.89977 4.99264 5.02781 5.09637 5.15016 5.25978 5.27527 5.33919 5.43272 5.51921 5.57549 5.62567 5.85951 6.19054 6.25884 6.33124 6.55769 6.94756 7.54007 8.54989 8.73880 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.009476 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.699923 B = 2954.186200 C = 3468.881012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.555 5.555 3 C 0.066 3.934 4 C -0.090 4.090 5 C 0.152 3.848 6 H 0.057 0.943 7 C -0.088 4.088 8 H 0.091 0.909 9 C -0.102 4.102 10 C -0.130 4.130 11 C 0.114 3.886 12 N -0.635 5.635 13 C 0.542 3.458 14 O -0.588 6.588 15 C -0.573 4.573 16 H 0.083 0.917 17 C 0.037 3.963 18 N -0.819 5.819 19 Si 0.982 3.018 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.253 1.253 23 C 0.069 3.931 24 H -0.002 1.002 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.270 0.730 38 H 0.013 0.987 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 -12.192 -1.890 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.280 5.280 3 C -0.060 4.060 4 C -0.128 4.128 5 C 0.048 3.952 6 H 0.075 0.925 7 C -0.108 4.108 8 H 0.109 0.891 9 C -0.140 4.140 10 C -0.168 4.168 11 C -0.009 4.009 12 N -0.372 5.372 13 C 0.347 3.653 14 O -0.474 6.474 15 C -0.609 4.609 16 H 0.101 0.899 17 C -0.178 4.178 18 N -0.449 5.449 19 Si 0.803 3.197 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.176 1.176 23 C -0.059 4.059 24 H 0.017 0.983 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.025 -11.974 -0.802 12.170 hybrid contribution -0.667 1.388 -1.151 1.923 sum 1.358 -10.586 -1.953 10.849 Atomic orbital electron populations 1.22282 0.87687 1.01919 0.99741 1.62077 1.07539 1.15027 1.43355 1.22600 0.95450 0.86966 1.00991 1.21646 0.95039 1.00008 0.96090 1.20980 0.97404 0.92392 0.84446 0.92514 1.21558 0.94057 0.95200 0.99999 0.89104 1.21512 1.01232 0.98717 0.92499 1.21941 1.00440 0.95244 0.99224 1.21619 0.98514 0.93484 0.87315 1.47949 1.64220 1.19553 1.05470 1.18241 0.76959 0.79882 0.90207 1.90539 1.57261 1.65140 1.34471 1.21494 1.34904 1.11408 0.93125 0.89861 1.26726 0.93515 0.96629 1.00943 1.70134 1.26371 1.18482 1.29880 0.85258 0.79569 0.77232 0.77689 1.18873 1.20202 1.17634 1.22070 0.95636 0.97335 0.90828 0.98347 0.89429 0.91608 0.95164 0.92695 0.91795 0.93218 0.89756 0.90591 0.93261 0.88853 0.90770 0.92352 0.91992 0.96884 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 9.62 127.69 1.23 2.33 16 2 N -0.55 -21.35 4.91 -922.66 -4.53 -25.88 16 3 C 0.07 3.13 4.33 86.31 0.37 3.50 16 4 C -0.09 -3.98 5.02 30.55 0.15 -3.83 16 5 C 0.15 5.89 3.05 44.94 0.14 6.03 16 6 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 7 C -0.09 -2.74 2.76 -10.64 -0.03 -2.77 16 8 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 9 C -0.10 -2.46 5.43 30.69 0.17 -2.29 16 10 C -0.13 -3.58 5.71 30.67 0.18 -3.41 16 11 C 0.11 4.01 6.35 86.35 0.55 4.56 16 12 N -0.64 -27.89 2.35 -800.65 -1.88 -29.77 16 13 C 0.54 29.80 6.28 86.36 0.54 30.34 16 14 O -0.59 -35.69 8.50 -4.30 -0.04 -35.73 16 15 C -0.57 -31.57 8.82 24.83 0.22 -31.35 16 16 H 0.08 4.20 5.73 -2.91 -0.02 4.19 16 17 C 0.04 2.02 5.50 85.30 0.47 2.49 16 18 N -0.82 -48.78 11.87 21.84 0.26 -48.52 16 19 Si 0.98 40.97 29.56 68.60 2.03 43.00 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 23 C 0.07 2.38 4.24 86.35 0.37 2.74 16 24 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.09 2.41 8.02 -2.38 -0.02 2.39 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 27 H 0.03 1.47 8.12 -2.38 -0.02 1.45 16 28 H 0.06 3.17 4.56 -38.41 -0.18 2.99 16 29 H 0.06 3.33 6.01 -3.42 -0.02 3.31 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.54 6.20 -2.38 -0.01 1.53 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.84 5.34 -2.39 -0.01 2.83 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.27 14.85 8.29 -92.71 -0.77 14.08 16 38 H 0.01 0.53 5.76 -2.39 -0.01 0.52 16 39 H 0.08 2.41 8.03 -2.39 -0.02 2.39 16 Total: -1.00 -68.01 284.96 1.05 -66.95 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.87 Total: 21.59 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 4.35 Total: 8.36 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -6.15 Total: -104.17 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.04 Total: -35.73 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -68.01 1.05 -66.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335280322.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.563 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds