Wall clock time and date at job start Sun Mar 29 2020 23:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46709 * 110.99880 * 2 1 4 4 C 1.53249 * 110.09964 * 184.90336 * 3 2 1 5 5 C 1.52852 * 108.66920 * 301.24095 * 4 3 2 6 6 H 1.09007 * 110.08386 * 299.19772 * 5 4 3 7 7 C 1.53839 * 108.38732 * 59.16333 * 5 4 3 8 8 H 1.09005 * 109.19074 * 58.66510 * 7 5 4 9 9 C 1.52682 * 108.88848 * 178.01981 * 7 5 4 10 10 C 1.53233 * 109.00562 * 297.51635 * 9 7 5 11 11 C 1.53070 * 109.87606 * 60.40863 * 10 9 7 12 12 N 1.46599 * 111.04629 * 177.73984 * 5 4 3 13 13 C 1.34778 * 121.03508 * 6.01893 * 12 5 4 14 14 O 1.21694 * 119.99952 * 354.31796 * 13 12 5 15 15 C 1.46370 * 120.00328 * 174.31452 * 13 12 5 16 16 H 1.08004 * 119.99833 * 341.06178 * 15 13 12 17 17 C 1.40051 * 120.00347 * 161.06409 * 15 13 12 18 18 N 1.30673 * 119.99642 * 337.95065 * 17 15 13 19 19 Si 1.86802 * 120.00152 * 157.67698 * 17 15 13 20 20 H 1.48503 * 109.46960 * 60.00113 * 19 17 15 21 21 H 1.48498 * 109.46911 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46908 * 299.99819 * 19 17 15 23 23 C 1.47070 * 111.00168 * 125.01694 * 2 1 3 24 24 H 1.08999 * 109.47154 * 294.98092 * 1 2 3 25 25 H 1.08999 * 109.47470 * 54.97843 * 1 2 3 26 26 H 1.09002 * 109.46806 * 174.98197 * 1 2 3 27 27 H 1.09005 * 109.36892 * 305.10247 * 3 2 1 28 28 H 1.09001 * 109.36677 * 64.71272 * 3 2 1 29 29 H 1.08999 * 109.60208 * 61.23687 * 4 3 2 30 30 H 1.09000 * 109.60574 * 181.56089 * 4 3 2 31 31 H 1.09002 * 109.55021 * 177.65769 * 9 7 5 32 32 H 1.09002 * 109.62389 * 57.41211 * 9 7 5 33 33 H 1.09001 * 109.40432 * 300.28923 * 10 9 7 34 34 H 1.08998 * 109.40489 * 180.53861 * 10 9 7 35 35 H 1.09001 * 109.50623 * 186.66915 * 11 10 9 36 36 H 1.08999 * 109.50253 * 66.55405 * 11 10 9 37 37 H 0.96996 * 120.00040 * 353.96224 * 18 17 15 38 38 H 1.08998 * 109.56514 * 54.59471 * 23 2 1 39 39 H 1.08996 * 109.57120 * 294.23900 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9948 1.3697 0.0000 4 6 3.5222 1.3475 -0.1230 5 6 4.0960 0.5519 1.0492 6 1 3.8243 1.0263 1.9923 7 6 3.5158 -0.8721 0.9995 8 1 3.7752 -1.3315 0.0456 9 6 4.1198 -1.6918 2.1372 10 6 5.6348 -1.7921 1.9304 11 6 6.2545 -0.3925 1.9354 12 7 5.5554 0.4522 0.9537 13 6 6.2364 1.1176 -0.0003 14 8 5.6344 1.7310 -0.8618 15 6 7.7000 1.1026 -0.0001 16 1 8.2371 0.8355 0.8981 17 6 8.4039 1.4346 -1.1644 18 7 7.8214 1.3376 -2.3301 19 14 10.1731 2.0233 -1.0504 20 1 11.0055 0.9698 -0.4161 21 1 10.6891 2.3072 -2.4137 22 1 10.2312 3.2604 -0.2311 23 6 1.9961 -0.7879 1.1245 24 1 -0.3633 0.4340 0.9315 25 1 -0.3634 0.5897 -0.8416 26 1 -0.3633 -1.0238 -0.0899 27 1 1.5723 1.9191 -0.8413 28 1 1.7142 1.8645 0.9298 29 1 3.8065 0.8760 -1.0637 30 1 3.9062 2.3672 -0.0944 31 1 3.6847 -2.6913 2.1375 32 1 3.9133 -1.2038 3.0898 33 1 5.8386 -2.2749 0.9747 34 1 6.0716 -2.3845 2.7344 35 1 7.3097 -0.4608 1.6709 36 1 6.1553 0.0458 2.9285 37 1 6.9333 0.9536 -2.3979 38 1 1.5715 -1.7913 1.0978 39 1 1.7334 -0.3032 2.0647 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335280324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:54 Heat of formation + Delta-G solvation = -40.425115 kcal Electronic energy + Delta-G solvation = -20011.407947 eV Core-core repulsion = 17146.207584 eV Total energy + Delta-G solvation = -2865.200363 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79748 -37.31917 -35.77782 -32.86349 -32.10140 -31.77310 -29.58933 -26.78945 -25.70573 -24.24305 -22.55722 -22.43368 -20.31736 -19.69677 -19.14360 -16.95202 -15.45034 -15.28436 -14.92454 -14.68214 -14.53929 -13.98540 -13.74728 -13.59722 -13.10116 -12.80149 -12.52708 -12.37245 -12.13535 -11.92458 -11.69267 -11.27347 -11.16286 -10.87579 -10.80715 -10.68611 -10.36062 -10.32284 -10.20935 -9.98354 -9.90892 -9.62886 -8.68722 -8.12743 -7.34437 -7.32739 -6.68642 -4.64942 3.28392 3.34029 3.52661 4.10217 4.17863 4.44353 4.52025 5.00528 5.13318 5.17675 5.36526 5.42661 5.46267 5.53326 5.60467 5.64032 5.71417 5.80377 5.86879 5.92510 5.93476 6.02627 6.10637 6.12375 6.25789 6.34164 6.43004 6.54038 6.57505 6.70490 6.94719 7.24866 7.32538 7.38818 7.53759 7.92999 8.13170 8.40308 8.91814 9.44295 10.41001 10.56754 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030033 B = 0.006958 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.099302 B = 4023.189873 C = 4702.615762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.546 5.546 3 C 0.049 3.951 4 C -0.088 4.088 5 C 0.159 3.841 6 H 0.041 0.959 7 C -0.100 4.100 8 H 0.080 0.920 9 C -0.107 4.107 10 C -0.132 4.132 11 C 0.123 3.877 12 N -0.634 5.634 13 C 0.561 3.439 14 O -0.612 6.612 15 C -0.621 4.621 16 H 0.068 0.932 17 C 0.056 3.944 18 N -0.804 5.804 19 Si 1.070 2.930 20 H -0.281 1.281 21 H -0.278 1.278 22 H -0.280 1.280 23 C 0.070 3.930 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.021 0.979 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.301 0.699 38 H 0.070 0.930 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 -5.208 8.269 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.079 4.079 4 C -0.126 4.126 5 C 0.054 3.946 6 H 0.059 0.941 7 C -0.120 4.120 8 H 0.098 0.902 9 C -0.145 4.145 10 C -0.171 4.171 11 C -0.001 4.001 12 N -0.369 5.369 13 C 0.370 3.630 14 O -0.501 6.501 15 C -0.656 4.656 16 H 0.086 0.914 17 C -0.167 4.167 18 N -0.432 5.432 19 Si 0.895 3.105 20 H -0.207 1.207 21 H -0.203 1.203 22 H -0.205 1.205 23 C -0.058 4.058 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.247 -4.530 6.470 10.719 hybrid contribution -1.694 -0.356 1.946 2.604 sum -8.942 -4.886 8.415 13.215 Atomic orbital electron populations 1.22316 0.88036 1.01706 1.00007 1.61727 1.06736 1.14560 1.44045 1.22452 0.98273 0.87800 0.99424 1.21932 0.89425 1.02082 0.99187 1.20935 0.82552 0.93714 0.97378 0.94129 1.21654 0.93079 0.97532 0.99728 0.90204 1.21431 0.95964 0.99201 0.97916 1.21917 0.95136 0.98247 1.01800 1.21383 0.98321 0.88969 0.91467 1.48048 1.04045 1.50550 1.34253 1.18286 0.88233 0.77742 0.78750 1.90532 1.70354 1.49174 1.40013 1.21820 0.89817 1.53135 1.00861 0.91437 1.26553 1.06185 0.92572 0.91398 1.70162 1.17976 1.29001 1.26017 0.83605 0.73215 0.77074 0.76594 1.20733 1.20260 1.20542 1.21995 0.95287 0.97434 0.91128 0.96233 0.91606 0.91786 0.91108 0.96070 0.89401 0.89834 0.92481 0.92536 0.91738 0.91871 0.88859 0.94264 0.88533 0.91181 0.95355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.60 60.07 0.58 0.92 16 2 N -0.55 -8.57 4.88 -242.95 -1.19 -9.75 16 3 C 0.05 0.82 5.45 -3.80 -0.02 0.80 16 4 C -0.09 -1.87 3.82 -26.68 -0.10 -1.97 16 5 C 0.16 3.18 2.71 -67.52 -0.18 3.00 16 6 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.10 -1.69 2.13 -90.49 -0.19 -1.89 16 8 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 9 C -0.11 -1.55 5.30 -26.77 -0.14 -1.69 16 10 C -0.13 -2.08 6.05 -26.57 -0.16 -2.24 16 11 C 0.12 2.33 6.27 -3.64 -0.02 2.31 16 12 N -0.63 -14.42 2.96 -166.69 -0.49 -14.91 16 13 C 0.56 15.50 7.16 -12.99 -0.09 15.41 16 14 O -0.61 -18.34 10.59 5.19 0.06 -18.29 16 15 C -0.62 -17.28 8.43 -35.63 -0.30 -17.58 16 16 H 0.07 1.76 6.39 -52.48 -0.34 1.42 16 17 C 0.06 1.55 5.33 -17.37 -0.09 1.46 16 18 N -0.80 -24.12 13.20 55.55 0.73 -23.38 16 19 Si 1.07 23.50 29.99 -169.99 -5.10 18.40 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 C 0.07 1.03 4.89 -3.88 -0.02 1.01 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 2.17 6.94 -51.93 -0.36 1.81 16 30 H 0.08 1.98 6.81 -51.93 -0.35 1.63 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.89 5.69 -51.93 -0.30 1.59 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.30 9.47 6.77 -40.82 -0.28 9.20 16 38 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -31.20 296.55 -8.60 -39.80 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.33 Total: 4.13 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.75 Total: -0.47 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.95 Total: -48.05 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.06 Total: -18.29 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.10 Total: 18.40 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.20 -8.60 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335280324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.622 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds