Wall clock time and date at job start Sun Mar 29 2020 23:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99872 * 2 1 4 4 C 1.53009 * 109.32179 * 186.26762 * 3 2 1 5 5 C 1.52878 * 109.83012 * 301.33309 * 4 3 2 6 6 H 1.08996 * 109.57319 * 176.10189 * 5 4 3 7 7 C 1.52716 * 109.96663 * 55.92126 * 5 4 3 8 8 H 1.09000 * 109.68782 * 65.03090 * 7 5 4 9 9 C 1.53201 * 109.06733 * 185.09931 * 7 5 4 10 10 C 1.53047 * 109.40334 * 61.55373 * 9 7 5 11 11 C 1.53170 * 109.42544 * 298.54335 * 10 9 7 12 12 N 1.46777 * 109.37131 * 296.09286 * 5 4 3 13 13 C 1.34784 * 120.68521 * 354.15757 * 12 5 4 14 14 O 1.21682 * 120.00181 * 358.20086 * 13 12 5 15 15 C 1.46376 * 119.99790 * 178.20288 * 13 12 5 16 16 H 1.07996 * 120.00059 * 8.69817 * 15 13 12 17 17 C 1.40049 * 119.99589 * 188.42785 * 15 13 12 18 18 N 1.30668 * 120.00369 * 0.27062 * 17 15 13 19 19 Si 1.86804 * 119.99884 * 180.27637 * 17 15 13 20 20 H 1.48501 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47259 * 119.99425 * 19 17 15 22 22 H 1.48503 * 109.47074 * 239.99904 * 19 17 15 23 23 C 1.46787 * 111.00179 * 123.98622 * 2 1 3 24 24 H 1.08995 * 109.46860 * 296.01062 * 1 2 3 25 25 H 1.08999 * 109.46871 * 56.01423 * 1 2 3 26 26 H 1.08997 * 109.46569 * 176.00589 * 1 2 3 27 27 H 1.08997 * 109.49801 * 306.22838 * 3 2 1 28 28 H 1.09002 * 109.49056 * 66.31804 * 3 2 1 29 29 H 1.09002 * 109.45438 * 60.98500 * 4 3 2 30 30 H 1.09003 * 109.45083 * 180.93848 * 4 3 2 31 31 H 1.09002 * 109.48553 * 301.57271 * 9 7 5 32 32 H 1.08998 * 109.49246 * 181.53775 * 9 7 5 33 33 H 1.09002 * 109.47899 * 178.55948 * 10 9 7 34 34 H 1.08997 * 109.48610 * 58.54124 * 10 9 7 35 35 H 1.08998 * 109.58148 * 294.63571 * 11 10 9 36 36 H 1.08998 * 109.58227 * 174.22782 * 11 10 9 37 37 H 0.96998 * 120.00249 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.42156 * 53.82205 * 23 2 1 39 39 H 1.08994 * 109.42894 * 293.99010 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5168 1.3298 -0.1576 5 6 4.1344 0.5206 0.9830 6 1 5.2101 0.4351 0.8293 7 6 3.5176 -0.8757 1.0253 8 1 3.7802 -1.4209 0.1187 9 6 4.0555 -1.6236 2.2493 10 6 3.6485 -0.8762 3.5213 11 6 4.2622 0.5271 3.5060 12 7 3.8751 1.2000 2.2579 13 6 3.2888 2.4134 2.2839 14 8 2.9984 2.9713 1.2422 15 6 3.0014 3.0600 3.5653 16 1 3.3823 2.6349 4.4821 17 6 2.2373 4.2331 3.6017 18 7 1.7765 4.7475 2.4925 19 14 1.8770 5.0627 5.2363 20 1 2.5072 4.2869 6.3346 21 1 2.4285 6.4414 5.2239 22 1 0.4085 5.1188 5.4498 23 6 1.9951 -0.7660 1.1363 24 1 -0.3633 0.4507 0.9235 25 1 -0.3633 0.5745 -0.8521 26 1 -0.3632 -1.0252 -0.0716 27 1 1.5589 1.9287 -0.8288 28 1 1.7405 1.8589 0.9410 29 1 3.7707 0.8571 -1.1065 30 1 3.9114 2.3458 -0.1412 31 1 5.1426 -1.6794 2.1926 32 1 3.6405 -2.6313 2.2713 33 1 4.0087 -1.4209 4.3940 34 1 2.5622 -0.7975 3.5649 35 1 5.3483 0.4514 3.5585 36 1 3.8921 1.0970 4.3583 37 1 1.2476 5.5602 2.5177 38 1 1.5585 -1.7648 1.1333 39 1 1.7349 -0.2603 2.0660 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335280325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:57 Heat of formation + Delta-G solvation = 5.118612 kcal Electronic energy + Delta-G solvation = -20745.636825 eV Core-core repulsion = 17882.411386 eV Total energy + Delta-G solvation = -2863.225439 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08975 -36.49404 -35.75487 -32.89682 -31.83954 -31.62036 -28.96385 -26.62572 -25.93020 -24.38283 -22.71737 -22.05138 -20.40107 -19.97146 -17.52230 -16.34695 -15.75464 -15.19380 -14.78237 -14.66511 -14.33411 -14.25540 -13.48167 -13.11608 -12.84115 -12.76314 -12.46783 -12.25742 -11.67662 -11.47177 -11.42916 -11.19709 -11.08428 -10.98074 -10.69226 -10.49459 -10.31287 -10.25560 -10.03557 -9.73127 -9.65317 -9.36759 -8.87814 -7.50649 -7.11774 -6.95046 -6.17602 -4.66131 3.08148 3.17682 3.20753 4.04667 4.44792 4.55044 4.72212 5.23666 5.26065 5.36219 5.55317 5.70995 5.75643 5.79355 5.96938 6.01558 6.05932 6.08879 6.13115 6.17169 6.26784 6.29693 6.40330 6.43013 6.56670 6.61675 6.65637 6.68281 6.81460 7.03961 7.33429 7.39073 7.46021 7.62466 7.82985 7.95657 8.17613 8.36168 8.98989 9.42167 10.52115 10.70576 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.009431 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.559220 B = 2968.303264 C = 3488.295426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.558 5.558 3 C 0.053 3.947 4 C -0.096 4.096 5 C 0.159 3.841 6 H 0.044 0.956 7 C -0.094 4.094 8 H 0.072 0.928 9 C -0.109 4.109 10 C -0.138 4.138 11 C 0.121 3.879 12 N -0.634 5.634 13 C 0.555 3.445 14 O -0.555 6.555 15 C -0.545 4.545 16 H 0.071 0.929 17 C 0.090 3.910 18 N -0.768 5.768 19 Si 0.902 3.098 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.277 1.277 23 C 0.069 3.931 24 H 0.020 0.980 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.028 0.972 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.091 0.909 37 H 0.267 0.733 38 H 0.054 0.946 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -9.440 0.668 9.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.283 5.283 3 C -0.072 4.072 4 C -0.134 4.134 5 C 0.054 3.946 6 H 0.062 0.938 7 C -0.114 4.114 8 H 0.091 0.909 9 C -0.147 4.147 10 C -0.177 4.177 11 C -0.003 4.003 12 N -0.372 5.372 13 C 0.362 3.638 14 O -0.439 6.439 15 C -0.582 4.582 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.397 5.397 19 Si 0.727 3.273 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.059 4.059 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.047 0.953 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.209 -9.180 -0.433 9.270 hybrid contribution -0.467 0.576 1.588 1.753 sum 0.742 -8.604 1.156 8.713 Atomic orbital electron populations 1.22197 0.88884 1.00429 1.00179 1.62096 1.06400 1.17310 1.42501 1.22973 0.94626 0.85504 1.04099 1.21906 0.95751 1.01656 0.94076 1.20734 0.96694 0.90989 0.86204 0.93797 1.21461 0.95290 0.97076 0.97597 0.90938 1.21516 1.00188 0.98037 0.95004 1.22006 1.01677 0.97042 0.96940 1.21419 0.97215 0.92104 0.89610 1.48066 1.65862 1.19799 1.03452 1.18025 0.76632 0.78535 0.90577 1.90533 1.55362 1.64479 1.33563 1.21060 1.35110 1.09501 0.92488 0.91088 1.25666 0.94072 0.96280 0.96942 1.69978 1.25573 1.17103 1.27045 0.86398 0.78485 0.79519 0.82883 1.18824 1.20167 1.20281 1.21968 0.94414 0.96826 0.92734 0.96120 0.92136 0.92729 0.93206 0.88491 0.95339 0.87568 0.92286 0.92711 0.92233 0.91550 0.94191 0.89048 0.92173 0.92755 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.59 60.07 0.58 1.13 16 2 N -0.56 -10.86 4.92 -242.98 -1.19 -12.06 16 3 C 0.05 1.20 4.35 -3.82 -0.02 1.18 16 4 C -0.10 -2.08 5.00 -26.79 -0.13 -2.22 16 5 C 0.16 3.15 3.03 -67.99 -0.21 2.94 16 6 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.09 -1.61 2.71 -90.64 -0.25 -1.85 16 8 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 9 C -0.11 -1.58 5.43 -26.60 -0.14 -1.72 16 10 C -0.14 -2.12 5.72 -26.62 -0.15 -2.28 16 11 C 0.12 2.22 6.35 -3.69 -0.02 2.19 16 12 N -0.63 -13.84 2.42 -167.30 -0.40 -14.24 16 13 C 0.56 14.65 6.34 -12.98 -0.08 14.57 16 14 O -0.55 -15.83 8.42 5.20 0.04 -15.78 16 15 C -0.54 -14.55 8.81 -35.63 -0.31 -14.86 16 16 H 0.07 1.77 5.74 -52.49 -0.30 1.47 16 17 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 18 N -0.77 -21.76 11.86 55.55 0.66 -21.10 16 19 Si 0.90 19.58 29.56 -169.99 -5.02 14.55 16 20 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 C 0.07 1.25 4.26 -3.86 -0.02 1.23 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.10 2.61 4.67 -52.96 -0.25 2.36 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 2.62 5.94 -51.38 -0.31 2.31 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.11 6.22 -51.93 -0.32 0.79 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.77 5.34 -51.93 -0.28 1.49 16 37 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 38 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 39 H 0.04 0.85 5.83 -51.93 -0.30 0.55 16 LS Contribution 285.20 15.07 4.30 4.30 Total: -1.00 -29.24 285.20 -8.44 -37.67 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.96 Total: 4.04 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.85 Total: 2.61 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.94 Total: -47.40 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.04 Total: -15.78 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.24 -8.44 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335280325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.793 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds