Wall clock time and date at job start Sun Mar 29 2020 23:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99872 * 2 1 4 4 C 1.53009 * 109.32179 * 186.26762 * 3 2 1 5 5 C 1.52878 * 109.83012 * 301.33309 * 4 3 2 6 6 H 1.08996 * 109.57319 * 176.10189 * 5 4 3 7 7 C 1.52716 * 109.96663 * 55.92126 * 5 4 3 8 8 H 1.09000 * 109.68782 * 65.03090 * 7 5 4 9 9 C 1.53201 * 109.06733 * 185.09931 * 7 5 4 10 10 C 1.53047 * 109.40334 * 61.55373 * 9 7 5 11 11 C 1.53170 * 109.42544 * 298.54335 * 10 9 7 12 12 N 1.46777 * 109.37131 * 296.09286 * 5 4 3 13 13 C 1.34784 * 120.68521 * 354.15757 * 12 5 4 14 14 O 1.21682 * 120.00181 * 358.20086 * 13 12 5 15 15 C 1.46376 * 119.99790 * 178.20288 * 13 12 5 16 16 H 1.07996 * 120.00059 * 8.69817 * 15 13 12 17 17 C 1.40049 * 119.99589 * 188.42785 * 15 13 12 18 18 N 1.30668 * 120.00369 * 0.27062 * 17 15 13 19 19 Si 1.86804 * 119.99884 * 180.27637 * 17 15 13 20 20 H 1.48501 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47259 * 119.99425 * 19 17 15 22 22 H 1.48503 * 109.47074 * 239.99904 * 19 17 15 23 23 C 1.46787 * 111.00179 * 123.98622 * 2 1 3 24 24 H 1.08995 * 109.46860 * 296.01062 * 1 2 3 25 25 H 1.08999 * 109.46871 * 56.01423 * 1 2 3 26 26 H 1.08997 * 109.46569 * 176.00589 * 1 2 3 27 27 H 1.08997 * 109.49801 * 306.22838 * 3 2 1 28 28 H 1.09002 * 109.49056 * 66.31804 * 3 2 1 29 29 H 1.09002 * 109.45438 * 60.98500 * 4 3 2 30 30 H 1.09003 * 109.45083 * 180.93848 * 4 3 2 31 31 H 1.09002 * 109.48553 * 301.57271 * 9 7 5 32 32 H 1.08998 * 109.49246 * 181.53775 * 9 7 5 33 33 H 1.09002 * 109.47899 * 178.55948 * 10 9 7 34 34 H 1.08997 * 109.48610 * 58.54124 * 10 9 7 35 35 H 1.08998 * 109.58148 * 294.63571 * 11 10 9 36 36 H 1.08998 * 109.58227 * 174.22782 * 11 10 9 37 37 H 0.96998 * 120.00249 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.42156 * 53.82205 * 23 2 1 39 39 H 1.08994 * 109.42894 * 293.99010 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5168 1.3298 -0.1576 5 6 4.1344 0.5206 0.9830 6 1 5.2101 0.4351 0.8293 7 6 3.5176 -0.8757 1.0253 8 1 3.7802 -1.4209 0.1187 9 6 4.0555 -1.6236 2.2493 10 6 3.6485 -0.8762 3.5213 11 6 4.2622 0.5271 3.5060 12 7 3.8751 1.2000 2.2579 13 6 3.2888 2.4134 2.2839 14 8 2.9984 2.9713 1.2422 15 6 3.0014 3.0600 3.5653 16 1 3.3823 2.6349 4.4821 17 6 2.2373 4.2331 3.6017 18 7 1.7765 4.7475 2.4925 19 14 1.8770 5.0627 5.2363 20 1 2.5072 4.2869 6.3346 21 1 2.4285 6.4414 5.2239 22 1 0.4085 5.1188 5.4498 23 6 1.9951 -0.7660 1.1363 24 1 -0.3633 0.4507 0.9235 25 1 -0.3633 0.5745 -0.8521 26 1 -0.3632 -1.0252 -0.0716 27 1 1.5589 1.9287 -0.8288 28 1 1.7405 1.8589 0.9410 29 1 3.7707 0.8571 -1.1065 30 1 3.9114 2.3458 -0.1412 31 1 5.1426 -1.6794 2.1926 32 1 3.6405 -2.6313 2.2713 33 1 4.0087 -1.4209 4.3940 34 1 2.5622 -0.7975 3.5649 35 1 5.3483 0.4514 3.5585 36 1 3.8921 1.0970 4.3583 37 1 1.2476 5.5602 2.5177 38 1 1.5585 -1.7648 1.1333 39 1 1.7349 -0.2603 2.0660 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335280325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:56 Heat of formation + Delta-G solvation = -14.656036 kcal Electronic energy + Delta-G solvation = -20746.494318 eV Core-core repulsion = 17882.411386 eV Total energy + Delta-G solvation = -2864.082932 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71845 -38.28848 -37.29726 -34.82954 -33.44522 -33.29459 -30.53004 -28.45282 -27.53030 -25.95157 -24.26884 -23.58807 -22.13256 -21.54542 -19.19784 -18.11483 -17.65833 -16.77784 -16.43865 -16.29951 -15.89365 -15.86937 -15.00132 -14.66113 -14.56761 -14.30201 -14.01102 -13.72816 -13.17539 -13.15251 -13.06865 -12.94922 -12.79348 -12.56255 -12.33217 -12.04173 -12.00086 -11.76354 -11.58275 -11.30125 -11.14410 -10.97170 -10.83184 -9.20213 -9.05510 -8.70969 -8.16324 -6.73767 1.36039 1.37936 1.52894 2.22973 2.50660 2.89552 3.16516 3.67027 3.86499 3.91780 4.01039 4.26504 4.35615 4.37769 4.43427 4.56277 4.58503 4.69682 4.72909 4.77332 4.79927 4.89837 4.99137 5.02825 5.09370 5.14752 5.25682 5.27374 5.33815 5.43403 5.51621 5.58173 5.61608 5.85952 6.19131 6.25348 6.32323 6.56142 6.94979 7.54232 8.55304 8.74388 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.009431 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.559220 B = 2968.303264 C = 3488.295426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.554 5.554 3 C 0.069 3.931 4 C -0.091 4.091 5 C 0.153 3.847 6 H 0.057 0.943 7 C -0.089 4.089 8 H 0.090 0.910 9 C -0.102 4.102 10 C -0.130 4.130 11 C 0.114 3.886 12 N -0.635 5.635 13 C 0.541 3.459 14 O -0.587 6.587 15 C -0.572 4.572 16 H 0.083 0.917 17 C 0.037 3.963 18 N -0.818 5.818 19 Si 0.982 3.018 20 H -0.250 1.250 21 H -0.272 1.272 22 H -0.273 1.273 23 C 0.069 3.931 24 H 0.000 1.000 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.270 0.730 38 H 0.084 0.916 39 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -12.222 1.864 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.279 5.279 3 C -0.057 4.057 4 C -0.128 4.128 5 C 0.049 3.951 6 H 0.075 0.925 7 C -0.108 4.108 8 H 0.108 0.892 9 C -0.139 4.139 10 C -0.169 4.169 11 C -0.009 4.009 12 N -0.372 5.372 13 C 0.346 3.654 14 O -0.474 6.474 15 C -0.608 4.608 16 H 0.101 0.899 17 C -0.178 4.178 18 N -0.449 5.449 19 Si 0.803 3.197 20 H -0.173 1.173 21 H -0.197 1.197 22 H -0.198 1.198 23 C -0.059 4.059 24 H 0.019 0.981 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 1.875 -12.015 0.776 12.185 hybrid contribution -0.651 1.400 1.153 1.927 sum 1.224 -10.615 1.929 10.858 Atomic orbital electron populations 1.22289 0.87665 1.02432 0.99296 1.62152 1.07596 1.15025 1.43134 1.22534 0.95461 0.86985 1.00763 1.21683 0.95031 1.00068 0.96056 1.20902 0.97492 0.92285 0.84463 0.92527 1.21460 0.94065 0.95293 1.00032 0.89164 1.21505 1.01285 0.98652 0.92502 1.21940 1.00404 0.95300 0.99217 1.21621 0.98445 0.93517 0.87357 1.47957 1.64816 1.18897 1.05538 1.18265 0.76925 0.79926 0.90235 1.90539 1.56480 1.65945 1.34392 1.21530 1.35636 1.10320 0.93336 0.89870 1.26726 0.93397 0.96770 1.00943 1.70141 1.26912 1.17884 1.29918 0.85197 0.78381 0.78234 0.77936 1.17259 1.19741 1.19777 1.22063 0.95647 0.97429 0.90726 0.98109 0.91883 0.89290 0.95021 0.93074 0.93456 0.91571 0.90576 0.89754 0.88869 0.93303 0.92338 0.90780 0.92006 0.89763 0.96926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 9.59 127.69 1.22 2.30 16 2 N -0.55 -21.21 4.92 -922.65 -4.54 -25.75 16 3 C 0.07 3.25 4.35 86.31 0.38 3.62 16 4 C -0.09 -4.01 5.00 30.56 0.15 -3.86 16 5 C 0.15 5.92 3.03 44.80 0.14 6.06 16 6 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 7 C -0.09 -2.75 2.71 -10.81 -0.03 -2.78 16 8 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 9 C -0.10 -2.46 5.43 30.68 0.17 -2.30 16 10 C -0.13 -3.59 5.72 30.67 0.18 -3.42 16 11 C 0.11 4.02 6.35 86.34 0.55 4.56 16 12 N -0.64 -27.90 2.42 -801.44 -1.94 -29.84 16 13 C 0.54 29.76 6.34 86.36 0.55 30.31 16 14 O -0.59 -35.62 8.42 -4.29 -0.04 -35.66 16 15 C -0.57 -31.51 8.81 24.83 0.22 -31.29 16 16 H 0.08 4.21 5.74 -2.91 -0.02 4.20 16 17 C 0.04 2.00 5.50 85.31 0.47 2.47 16 18 N -0.82 -48.75 11.86 21.84 0.26 -48.49 16 19 Si 0.98 40.99 29.56 68.60 2.03 43.02 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 C 0.07 2.38 4.26 86.34 0.37 2.74 16 24 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.06 2.08 8.09 -2.39 -0.02 2.06 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.03 1.53 8.08 -2.39 -0.02 1.51 16 28 H 0.05 2.94 4.67 -31.27 -0.15 2.79 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 3.46 5.94 -6.24 -0.04 3.42 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.54 6.22 -2.39 -0.01 1.52 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.85 5.34 -2.39 -0.01 2.83 16 37 H 0.27 14.79 8.29 -92.71 -0.77 14.02 16 38 H 0.08 2.41 8.12 -2.39 -0.02 2.39 16 39 H 0.01 0.51 5.83 -2.39 -0.01 0.50 16 Total: -1.00 -67.93 285.20 1.01 -66.92 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.88 Total: 21.36 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 4.35 Total: 8.44 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -6.21 Total: -104.08 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.04 Total: -35.66 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -67.93 1.01 -66.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335280325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.268 kcal (2) G-P(sol) polarization free energy of solvation -67.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds