Wall clock time and date at job start Sun Mar 29 2020 23:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46767 * 124.34863 * 2 1 4 4 C 1.54688 * 105.53277 * 196.89996 * 3 2 1 5 5 C 1.54631 * 101.67160 * 334.74221 * 4 3 2 6 6 H 1.08996 * 110.48730 * 265.90894 * 5 4 3 7 7 N 1.46898 * 110.49043 * 143.39028 * 5 4 3 8 8 C 1.46847 * 111.00188 * 304.87101 * 7 5 4 9 9 C 1.53036 * 109.52310 * 185.83686 * 8 7 5 10 10 C 1.53120 * 109.27424 * 300.82027 * 9 8 7 11 11 C 1.50706 * 109.51823 * 177.56185 * 10 9 8 12 12 H 1.07995 * 120.00042 * 331.80899 * 11 10 9 13 13 C 1.37885 * 119.99699 * 151.81672 * 11 10 9 14 14 N 1.31517 * 119.99409 * 173.55521 * 13 11 10 15 15 Si 1.86799 * 120.00169 * 353.55056 * 13 11 10 16 16 H 1.48498 * 109.46978 * 273.79444 * 15 13 11 17 17 H 1.48501 * 109.47155 * 33.79338 * 15 13 11 18 18 H 1.48499 * 109.46929 * 153.79259 * 15 13 11 19 19 C 1.53113 * 109.21856 * 57.62293 * 10 9 8 20 20 C 1.46850 * 110.99284 * 69.07768 * 7 5 4 21 21 C 1.34421 * 124.34971 * 179.97438 * 2 1 3 22 22 O 1.21281 * 124.93940 * 359.57440 * 21 2 1 23 23 H 1.09001 * 109.47215 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47489 * 300.05052 * 1 2 3 25 25 H 1.09007 * 109.47294 * 60.05131 * 1 2 3 26 26 H 1.08999 * 110.24787 * 315.99125 * 3 2 1 27 27 H 1.08998 * 110.24454 * 77.99253 * 3 2 1 28 28 H 1.08994 * 111.08856 * 216.62383 * 4 3 2 29 29 H 1.08999 * 110.94738 * 92.79758 * 4 3 2 30 30 H 1.09003 * 109.45940 * 65.82083 * 8 7 5 31 31 H 1.08997 * 109.45710 * 305.85116 * 8 7 5 32 32 H 1.08998 * 109.50276 * 180.87881 * 9 8 7 33 33 H 1.08999 * 109.53360 * 60.77429 * 9 8 7 34 34 H 1.08999 * 109.52746 * 297.68084 * 10 9 8 35 35 H 0.97003 * 119.99161 * 179.97438 * 14 13 11 36 36 H 1.09007 * 109.49811 * 62.31520 * 19 10 9 37 37 H 1.08999 * 109.50549 * 182.43407 * 19 10 9 38 38 H 1.08996 * 109.46791 * 294.17175 * 20 7 5 39 39 H 1.09002 * 109.46753 * 54.15878 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7042 0.7491 -0.4333 5 6 3.6898 -0.7378 -0.0092 6 1 4.1196 -0.8550 0.9855 7 7 4.4216 -1.5576 -0.9841 8 6 3.8875 -1.3668 -2.3386 9 6 4.5731 -2.3398 -3.3005 10 6 6.0829 -2.0849 -3.2863 11 6 6.7699 -3.0795 -4.1863 12 1 6.3307 -4.0523 -4.3508 13 6 7.9594 -2.7474 -4.7997 14 7 8.6232 -3.6551 -5.4817 15 14 8.6277 -1.0085 -4.6620 16 1 8.0350 -0.1645 -5.7304 17 1 8.2745 -0.4462 -3.3337 18 1 10.1048 -1.0327 -4.8124 19 6 6.6071 -2.2414 -1.8563 20 6 5.8613 -1.2724 -0.9359 21 6 2.2234 -1.1098 0.0005 22 8 1.7946 -2.2442 0.0084 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5146 0.8894 25 1 -0.3634 0.5131 -0.8905 26 1 1.8987 1.9382 -0.7105 27 1 2.3302 1.6432 1.0003 28 1 4.4785 1.2996 0.1009 29 1 3.8321 0.8461 -1.5114 30 1 4.0756 -0.3430 -2.6622 31 1 2.8139 -1.5552 -2.3354 32 1 4.1877 -2.1872 -4.3085 33 1 4.3741 -3.3642 -2.9859 34 1 6.2850 -1.0738 -3.6397 35 1 9.4598 -3.4213 -5.9135 36 1 6.4409 -3.2642 -1.5178 37 1 7.6738 -2.0187 -1.8333 38 1 6.0402 -0.2492 -1.2662 39 1 6.2215 -1.3924 0.0859 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335978585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:38 Heat of formation + Delta-G solvation = -25.316421 kcal Electronic energy + Delta-G solvation = -19542.471755 eV Core-core repulsion = 16677.926554 eV Total energy + Delta-G solvation = -2864.545201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79156 -38.04140 -36.30625 -34.19775 -32.14576 -30.67218 -30.13803 -27.49338 -26.67096 -24.83950 -22.73615 -22.33328 -20.92961 -19.29539 -18.58037 -16.96890 -16.73637 -16.60062 -15.77682 -14.81109 -14.50108 -14.40282 -13.88722 -13.78496 -13.33643 -13.09155 -12.93465 -12.68468 -12.52389 -12.46044 -12.17173 -11.81199 -11.56181 -11.51286 -11.20318 -10.91118 -10.52443 -10.28189 -9.84109 -9.76329 -9.48146 -9.15154 -8.92437 -8.84606 -8.45806 -7.93477 -6.03252 -4.00635 2.58051 2.88550 3.28789 3.37297 3.38652 4.01349 4.28753 4.44872 4.55646 4.72195 4.83215 5.09929 5.15808 5.25459 5.26545 5.38396 5.49840 5.52450 5.56549 5.61267 5.80081 5.91773 5.93885 6.17540 6.22998 6.36844 6.44232 6.51368 6.76639 6.92024 6.95390 7.02447 7.32309 7.35700 7.53647 7.62446 7.83678 8.21647 8.59797 9.04098 9.60622 11.10545 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039264 B = 0.005643 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.943375 B = 4960.991141 C = 5201.945387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.631 5.631 3 C 0.109 3.891 4 C -0.176 4.176 5 C 0.055 3.945 6 H 0.114 0.886 7 N -0.510 5.510 8 C 0.054 3.946 9 C -0.098 4.098 10 C 0.015 3.985 11 C -0.508 4.508 12 H 0.073 0.927 13 C 0.069 3.931 14 N -0.902 5.902 15 Si 0.876 3.124 16 H -0.279 1.279 17 H -0.264 1.264 18 H -0.291 1.291 19 C -0.108 4.108 20 C 0.056 3.944 21 C 0.525 3.475 22 O -0.510 6.510 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.069 13.348 12.008 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.368 5.368 3 C -0.014 4.014 4 C -0.215 4.215 5 C -0.058 4.058 6 H 0.132 0.868 7 N -0.234 5.234 8 C -0.074 4.074 9 C -0.136 4.136 10 C -0.004 4.004 11 C -0.546 4.546 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.703 3.297 16 H -0.205 1.205 17 H -0.188 1.188 18 H -0.217 1.217 19 C -0.147 4.147 20 C -0.071 4.071 21 C 0.311 3.689 22 O -0.383 6.383 23 H 0.101 0.899 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.276 12.169 12.018 21.053 hybrid contribution 0.549 1.953 -0.197 2.038 sum -11.727 14.122 11.821 21.833 Atomic orbital electron populations 1.21516 0.78221 1.03733 1.01169 1.48147 1.06364 1.07517 1.74793 1.22005 0.90539 0.87330 1.01541 1.23422 0.96560 0.97642 1.03913 1.22456 0.92868 0.90881 0.99585 0.86784 1.61941 1.03456 1.52603 1.05356 1.22299 0.98530 0.98304 0.88242 1.21576 0.97144 0.98562 0.96320 1.19156 0.91833 0.96675 0.92692 1.21038 1.06036 1.01274 1.26205 0.90918 1.25059 0.96367 0.96770 0.94988 1.69929 1.15862 1.33377 1.34897 0.86897 0.77795 0.85991 0.78975 1.20493 1.18848 1.21712 1.21923 0.97907 0.98439 0.96409 1.22272 0.86272 0.98310 1.00245 1.20721 0.88827 0.84285 0.75019 1.90715 1.78189 1.20940 1.48458 0.89925 0.92324 0.92234 0.90584 0.91196 0.89108 0.89068 0.95193 0.92182 0.92302 0.91755 0.95873 0.92796 0.91647 0.92514 0.95445 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 11.14 59.85 0.67 1.51 16 2 N -0.63 -7.14 3.33 -180.15 -0.60 -7.74 16 3 C 0.11 0.92 7.35 -3.01 -0.02 0.90 16 4 C -0.18 -1.80 5.78 -24.99 -0.14 -1.94 16 5 C 0.05 0.74 3.02 -67.72 -0.20 0.54 16 6 H 0.11 1.40 8.09 -51.93 -0.42 0.98 16 7 N -0.51 -8.69 4.67 -226.70 -1.06 -9.75 16 8 C 0.05 0.95 4.77 -3.83 -0.02 0.93 16 9 C -0.10 -2.05 5.36 -26.65 -0.14 -2.20 16 10 C 0.02 0.36 1.71 -91.65 -0.16 0.20 16 11 C -0.51 -14.26 8.86 -34.43 -0.31 -14.56 16 12 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 15 Si 0.88 21.35 26.50 -169.99 -4.50 16.85 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.26 -6.04 6.29 56.52 0.36 -5.68 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 C -0.11 -2.29 5.20 -26.65 -0.14 -2.43 16 20 C 0.06 0.96 5.20 -3.83 -0.02 0.94 16 21 C 0.53 7.90 6.11 -10.86 -0.07 7.84 16 22 O -0.51 -9.80 17.32 5.56 0.10 -9.71 16 23 H 0.08 0.85 7.53 -51.93 -0.39 0.46 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.05 5.60 -51.93 -0.29 0.76 16 30 H 0.03 0.50 6.08 -51.93 -0.32 0.18 16 31 H 0.06 1.07 6.92 -51.93 -0.36 0.71 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.02 0.54 5.62 -51.93 -0.29 0.25 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.06 1.23 7.18 -51.93 -0.37 0.85 16 38 H 0.03 0.45 7.62 -51.93 -0.40 0.05 16 39 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 300.49 15.07 4.53 4.53 Total: -1.00 -33.08 300.49 -7.66 -40.73 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.24 Total: -1.58 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.65 Total: -6.38 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.89 Total: -44.44 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.10 Total: -9.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.50 Total: 16.85 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.08 -7.66 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335978585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.417 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds