Wall clock time and date at job start Sun Mar 29 2020 23:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46767 * 124.34863 * 2 1 4 4 C 1.54688 * 105.53277 * 196.89996 * 3 2 1 5 5 C 1.54631 * 101.67160 * 334.74221 * 4 3 2 6 6 H 1.08996 * 110.48730 * 265.90894 * 5 4 3 7 7 N 1.46898 * 110.49043 * 143.39028 * 5 4 3 8 8 C 1.46847 * 111.00188 * 304.87101 * 7 5 4 9 9 C 1.53036 * 109.52310 * 185.83686 * 8 7 5 10 10 C 1.53120 * 109.27424 * 300.82027 * 9 8 7 11 11 C 1.50706 * 109.51823 * 177.56185 * 10 9 8 12 12 H 1.07995 * 120.00042 * 331.80899 * 11 10 9 13 13 C 1.37885 * 119.99699 * 151.81672 * 11 10 9 14 14 N 1.31517 * 119.99409 * 173.55521 * 13 11 10 15 15 Si 1.86799 * 120.00169 * 353.55056 * 13 11 10 16 16 H 1.48498 * 109.46978 * 273.79444 * 15 13 11 17 17 H 1.48501 * 109.47155 * 33.79338 * 15 13 11 18 18 H 1.48499 * 109.46929 * 153.79259 * 15 13 11 19 19 C 1.53113 * 109.21856 * 57.62293 * 10 9 8 20 20 C 1.46850 * 110.99284 * 69.07768 * 7 5 4 21 21 C 1.34421 * 124.34971 * 179.97438 * 2 1 3 22 22 O 1.21281 * 124.93940 * 359.57440 * 21 2 1 23 23 H 1.09001 * 109.47215 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47489 * 300.05052 * 1 2 3 25 25 H 1.09007 * 109.47294 * 60.05131 * 1 2 3 26 26 H 1.08999 * 110.24787 * 315.99125 * 3 2 1 27 27 H 1.08998 * 110.24454 * 77.99253 * 3 2 1 28 28 H 1.08994 * 111.08856 * 216.62383 * 4 3 2 29 29 H 1.08999 * 110.94738 * 92.79758 * 4 3 2 30 30 H 1.09003 * 109.45940 * 65.82083 * 8 7 5 31 31 H 1.08997 * 109.45710 * 305.85116 * 8 7 5 32 32 H 1.08998 * 109.50276 * 180.87881 * 9 8 7 33 33 H 1.08999 * 109.53360 * 60.77429 * 9 8 7 34 34 H 1.08999 * 109.52746 * 297.68084 * 10 9 8 35 35 H 0.97003 * 119.99161 * 179.97438 * 14 13 11 36 36 H 1.09007 * 109.49811 * 62.31520 * 19 10 9 37 37 H 1.08999 * 109.50549 * 182.43407 * 19 10 9 38 38 H 1.08996 * 109.46791 * 294.17175 * 20 7 5 39 39 H 1.09002 * 109.46753 * 54.15878 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7042 0.7491 -0.4333 5 6 3.6898 -0.7378 -0.0092 6 1 4.1196 -0.8550 0.9855 7 7 4.4216 -1.5576 -0.9841 8 6 3.8875 -1.3668 -2.3386 9 6 4.5731 -2.3398 -3.3005 10 6 6.0829 -2.0849 -3.2863 11 6 6.7699 -3.0795 -4.1863 12 1 6.3307 -4.0523 -4.3508 13 6 7.9594 -2.7474 -4.7997 14 7 8.6232 -3.6551 -5.4817 15 14 8.6277 -1.0085 -4.6620 16 1 8.0350 -0.1645 -5.7304 17 1 8.2745 -0.4462 -3.3337 18 1 10.1048 -1.0327 -4.8124 19 6 6.6071 -2.2414 -1.8563 20 6 5.8613 -1.2724 -0.9359 21 6 2.2234 -1.1098 0.0005 22 8 1.7946 -2.2442 0.0084 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5146 0.8894 25 1 -0.3634 0.5131 -0.8905 26 1 1.8987 1.9382 -0.7105 27 1 2.3302 1.6432 1.0003 28 1 4.4785 1.2996 0.1009 29 1 3.8321 0.8461 -1.5114 30 1 4.0756 -0.3430 -2.6622 31 1 2.8139 -1.5552 -2.3354 32 1 4.1877 -2.1872 -4.3085 33 1 4.3741 -3.3642 -2.9859 34 1 6.2850 -1.0738 -3.6397 35 1 9.4598 -3.4213 -5.9135 36 1 6.4409 -3.2642 -1.5178 37 1 7.6738 -2.0187 -1.8333 38 1 6.0402 -0.2492 -1.2662 39 1 6.2215 -1.3924 0.0859 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335978585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:37 Heat of formation + Delta-G solvation = -49.963056 kcal Electronic energy + Delta-G solvation = -19543.540514 eV Core-core repulsion = 16677.926554 eV Total energy + Delta-G solvation = -2865.613959 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.83125 -39.44366 -37.39979 -35.75944 -33.95264 -31.93411 -31.64889 -28.68614 -27.76159 -26.25126 -24.16705 -23.67606 -22.29503 -20.32676 -20.18872 -18.95076 -17.85157 -17.59041 -16.95320 -16.35244 -15.77225 -15.60977 -15.24234 -14.86956 -14.83160 -14.55404 -14.39709 -13.95588 -13.81039 -13.48674 -13.18447 -13.12051 -13.00120 -12.85241 -12.64539 -12.32863 -12.19021 -11.81618 -11.69214 -11.39352 -11.00720 -10.91132 -10.73712 -10.59028 -9.69384 -9.15005 -8.25703 -6.29394 1.37249 1.38857 1.50003 1.51004 2.05801 2.38911 2.90131 3.09675 3.37622 3.69546 3.90640 3.99512 4.10367 4.16581 4.31527 4.38332 4.42912 4.52113 4.57203 4.68527 4.70386 4.75843 4.78711 4.86532 4.93696 4.95484 4.98778 5.11373 5.24032 5.32692 5.55191 5.59117 5.67913 5.80061 6.01808 6.13707 6.21596 6.37963 6.77558 7.18836 7.35780 8.92164 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039264 B = 0.005643 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.943375 B = 4960.991141 C = 5201.945387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.626 5.626 3 C 0.109 3.891 4 C -0.166 4.166 5 C 0.052 3.948 6 H 0.130 0.870 7 N -0.536 5.536 8 C 0.069 3.931 9 C -0.096 4.096 10 C 0.017 3.983 11 C -0.518 4.518 12 H 0.019 0.981 13 C 0.007 3.993 14 N -0.956 5.956 15 Si 0.947 3.053 16 H -0.268 1.268 17 H -0.231 1.231 18 H -0.290 1.290 19 C -0.107 4.107 20 C 0.067 3.933 21 C 0.512 3.488 22 O -0.570 6.570 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.039 0.961 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.431 18.025 13.944 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.361 5.361 3 C -0.013 4.013 4 C -0.206 4.206 5 C -0.060 4.060 6 H 0.147 0.853 7 N -0.260 5.260 8 C -0.058 4.058 9 C -0.134 4.134 10 C -0.002 4.002 11 C -0.556 4.556 12 H 0.038 0.962 13 C -0.189 4.189 14 N -0.596 5.596 15 Si 0.770 3.230 16 H -0.194 1.194 17 H -0.154 1.154 18 H -0.217 1.217 19 C -0.146 4.146 20 C -0.060 4.060 21 C 0.299 3.701 22 O -0.448 6.448 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.676 16.906 13.978 25.335 hybrid contribution 0.575 0.383 -0.812 1.066 sum -12.101 17.289 13.166 24.873 Atomic orbital electron populations 1.21696 0.77005 1.02986 1.03453 1.48334 1.07409 1.07610 1.72728 1.22286 0.88911 0.86213 1.03908 1.23415 0.98681 0.94876 1.03579 1.22545 0.91456 0.92699 0.99263 0.85261 1.61756 1.03836 1.55031 1.05402 1.22028 0.97580 0.98054 0.88144 1.21464 0.96363 0.98203 0.97396 1.19116 0.92619 0.95375 0.93056 1.21332 1.06488 1.00404 1.27392 0.96236 1.26046 0.96568 1.01931 0.94390 1.70107 1.16675 1.36268 1.36588 0.85749 0.76823 0.79642 0.80754 1.19371 1.15429 1.21663 1.21763 0.98318 0.98625 0.95865 1.22122 0.85733 0.97652 1.00472 1.21107 0.90016 0.84273 0.74688 1.90682 1.79226 1.23349 1.51520 0.92268 0.89555 0.90322 0.88289 0.88300 0.86152 0.90083 0.92892 0.92720 0.92723 0.94686 0.94761 0.92673 0.94162 0.92886 0.93323 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.14 127.77 1.42 2.79 16 2 N -0.63 -12.17 3.33 -842.47 -2.81 -14.98 16 3 C 0.11 1.24 7.35 86.90 0.64 1.88 16 4 C -0.17 -2.52 5.78 31.72 0.18 -2.33 16 5 C 0.05 1.25 3.02 44.91 0.14 1.38 16 6 H 0.13 2.68 8.09 -2.39 -0.02 2.66 16 7 N -0.54 -17.18 4.67 -871.13 -4.07 -21.25 16 8 C 0.07 2.36 4.77 86.33 0.41 2.77 16 9 C -0.10 -4.11 5.36 30.65 0.16 -3.95 16 10 C 0.02 0.80 1.71 -11.46 -0.02 0.78 16 11 C -0.52 -30.38 8.86 25.60 0.23 -30.16 16 12 H 0.02 1.30 8.06 -2.91 -0.02 1.27 16 13 C 0.01 0.39 5.47 84.66 0.46 0.86 16 14 N -0.96 -61.01 13.96 21.45 0.30 -60.71 16 15 Si 0.95 43.35 26.50 68.60 1.82 45.16 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.23 -9.33 6.29 99.48 0.63 -8.70 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 19 C -0.11 -4.44 5.20 30.65 0.16 -4.28 16 20 C 0.07 2.06 5.20 86.33 0.45 2.51 16 21 C 0.51 14.59 6.11 87.90 0.54 15.13 16 22 O -0.57 -22.25 17.32 -3.03 -0.05 -22.30 16 23 H 0.06 1.19 7.53 -2.39 -0.02 1.17 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.44 5.60 -2.39 -0.01 1.43 16 30 H 0.05 1.57 6.08 -2.39 -0.01 1.55 16 31 H 0.05 1.92 6.92 -2.39 -0.02 1.90 16 32 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 1.52 5.62 -2.39 -0.01 1.51 16 35 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.05 2.20 7.18 -2.39 -0.02 2.18 16 38 H 0.05 1.32 7.62 -2.39 -0.02 1.30 16 39 H 0.09 2.33 8.08 -2.39 -0.02 2.31 16 Total: -1.00 -77.68 300.49 0.91 -76.77 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.94 Total: 9.92 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 4.77 Total: -12.62 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -6.58 Total: -96.94 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.05 Total: -22.30 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.82 Total: 45.16 kcal Total: -77.68 0.91 -76.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335978585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.811 kcal (2) G-P(sol) polarization free energy of solvation -77.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds